KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:38 2014 Check: 00 .. Name: ENSTTRP00000004107/1-1210 Len: 1249 Check: 1821 Weight: 1.00 Name: bmy_19567T0/1-1116 Len: 1249 Check: 4697 Weight: 1.00 Name: BACU010990/1-480 Len: 1249 Check: 9124 Weight: 1.00 Name: ENSP00000264057/1-1214 Len: 1249 Check: 148 Weight: 1.00 Name: ENSBTAP00000027473/1-1164 Len: 1249 Check: 8124 Weight: 1.00 // 1 50 ENSTTRP00000004107/1-1210 MAAAAGAFKT GPPQPTQLAP PDETSNIIRF LPSAPLNIIL ---GVSTGLH bmy_19567T0/1-1116 ---------- ---------- ---------- ---------- ---------- BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 MAAAAGAPPP GPPQPPPPPP PEESSDSEPE AEPGSPQKLI RKVSTSGQIR ENSBTAP00000027473/1-1164 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004107/1-1210 HITVIKEGML TKQNNSFQRS KRRYFKLRGR TLYYAKTAKS IIFDEV-LTD bmy_19567T0/1-1116 ---------- ---------- ---------- ---------- ---------- BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 QKTIIKEGML TKQNNSFQRS KRRYFKLRGR TLYYAKTAKS IIFDEVDLTD ENSBTAP00000027473/1-1164 -QTVIKEGML TKQNNSFQRS KRRYFKLRGR TLYYAKTAKS IIFDEVDLTD 101 150 ENSTTRP00000004107/1-1210 ASVAESSTKN VNNSFTXXXX XXXXILCADN RKEMEDWIAA LKTVQSREHF bmy_19567T0/1-1116 ------MFHV SCFFLQVITP CRKLILCADN RKEMEDWIAA LKTVQSREHF BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 ASVAESSTKN VNNSFTVITP CRKLILCADN RKEMEDWIAA LKTVQNREHF ENSBTAP00000027473/1-1164 ASVAESSTKN VNNSFTVITP CRKLILCADN RKEMEDWIAA LKTVQSREHF 151 200 ENSTTRP00000004107/1-1210 EPTQYSMDHF SGIHNWYACS HARPTYCNVC REALSGVTSH GLSCEVCKFK bmy_19567T0/1-1116 EPTQYSMDHF SGMHNWYACS HARPTYCNVC REALSGVTSH GLSCEVCKFK BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 EPTQYSMDHF SGMHNWYACS HARPTYCNVC REALSGVTSH GLSCEVCKFK ENSBTAP00000027473/1-1164 EPTQYSMDHF SGTHNWYACS HARPTYCNVC REALSGVTSH GLSCEVCKFK 201 250 ENSTTRP00000004107/1-1210 AHKRCAVRAT SNCKWTTLAS IGKDIIEDED GIAMPHQWLE GNLPVSAKCT bmy_19567T0/1-1116 AHKRCAVRAT SNCKWTTLAS IGKDIIEDED GIAMPHQWLE GNLPVSAKCT BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 AHKRCAVRAT NNCKWTTLAS IGKDIIEDAD GIAMPHQWLE GNLPVSAKCT ENSBTAP00000027473/1-1164 AHKRCAVRAT SNCKWTTLAS IGKDIIEDED GIAMPHQWLE GNLPVSAKCT 251 300 ENSTTRP00000004107/1-1210 VCDKTCGSVL RLQDWRCLWC KAMVHTACKE SLLTKCPLGL CKVSVIPPTA bmy_19567T0/1-1116 VCDKTCGSVL RLQDWRCLWC KAMVHTACKE SLLTKCPLGL CKVSVIPPTA BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 VCDKTCGSVL RLQDWRCLWC KAMVHTSCKE SLLTKCPLGL CKVSVIPPTA ENSBTAP00000027473/1-1164 VCDKTCGSVL RLQDWRCLWC KAMVHTACKD SLVTKCPLGL CKVSVIPPTA 301 350 ENSTTRP00000004107/1-1210 LNSIDSDGFW KATCPPSCTS PLLVFVNSKS GDNQGVKFLR RFKQLLNPAQ bmy_19567T0/1-1116 LNSIDSDGFW KATCPPSCTS PLLVFVNSKS GDNQGVKFLR RFKQLLNPAQ BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 LNSIDSDGFW KASCPPSCTS PLLVFVNSKS GDNQGVKFLR RFKQLLNPAQ ENSBTAP00000027473/1-1164 LNSIDSDGFW KATCPPSCTS PLLVFVNSKS GDNQGVKFLR RFKQLLNPAQ 351 400 ENSTTRP00000004107/1-1210 VFDLMNGGPH LGLRLFQKFD TFRILVCGGD GSVGWVLSEI DSLNLHKQCQ bmy_19567T0/1-1116 VFDLMNGGPH LGLRLFQKFD TFRILVCGGD GSVGWVLSEI DSLNLHKQCQ BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 VFDLMNGGPH LGLRLFQKFD TFRILVCGGD GSVGWVLSEI DSLNLHKQCQ ENSBTAP00000027473/1-1164 VFDLMNGGPH LGLRLFQKFD TFRILVCGGD GSVGWVLSEI DSLNLHKQCQ 401 450 ENSTTRP00000004107/1-1210 LGVLPLGTGN DLARVLGWGS ACDDDTQLPQ ILEKLERAST KMLDRWSVMA bmy_19567T0/1-1116 LGVLPLGTGN DLARVLGWGS ACDDDTQLPQ ILEKLERAST KMLDRWSVMA BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 LGVLPLGTGN DLARVLGWGS ACDDDTQLPQ ILEKLERAST KMLDRWSVMA ENSBTAP00000027473/1-1164 LGVLPLGTGN DLARVLGWGS ACDDDTQLPQ ILEKLERAST KMLDRWSVMA 451 500 ENSTTRP00000004107/1-1210 YETKLPRPAS SSTVTEDLSE GSEVQQILFY EDSVAAHLSK ILTSDQHSVV bmy_19567T0/1-1116 YETKLPRPAS SSTVTEDLSE GSEVQQILFY EDSVAAHLSK ILTSDQHSVV BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 YEAKLPRQAS SSTVTEDFSE DSEVQQILFY EDSVAAHLSK ILTSDQHSVV ENSBTAP00000027473/1-1164 YETKLPRPVS SSTVTEDLSE GSEVQQILFY EDSVAAHLSK ILTSDQHSVV 501 550 ENSTTRP00000004107/1-1210 ISSAKVLCET VKDFVARVGK AYEKTTESSE ESEVMAKKCS VLKEKLDSLL bmy_19567T0/1-1116 ISSAKVLCET VKDFVARVGK AYEKTTESSE ESEVMAKKCS VLKEKLDSLL BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 ISSAKVLCET VKDFVARVGK AYEKTTESSE ESEVMAKKCS VLKEKLDSLL ENSBTAP00000027473/1-1164 ISSAKVLCET VKDFVARVGK AYEKTTESSE ESEVMAKKCS VLKEKLDSLL 551 600 ENSTTRP00000004107/1-1210 KTLDDESQAS SSLPTPPPTI AEEAEDGEGA GGSCGSSSTG DRAVGSACPA bmy_19567T0/1-1116 KTLDDESQAS SSLPTPPPTI AEEVEDGEGA GSSCGSGSTG DRAVGSACPA BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 KTLDDESQAS SSLPNPPPTI AEEAEDGDGS GSICG--STG DRLVASACPA ENSBTAP00000027473/1-1164 KTLDDESQAS SSLPTPPPTI AEEAEDGDGA GGGCGSGSTG AHAVGSACPT 601 650 ENSTTRP00000004107/1-1210 RPQIFRPREQ LMLRANSLKK AIRQIIEHTE KAVDEQNAQT QEHEGFILGL bmy_19567T0/1-1116 RPQIFRPREQ LMLRANSLKK AIRQIIEHTE KGSRALDA-- -------VGL BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 RPQIFRPREQ LMLRANSLKK AIRQIIEHTE KAVDEQNAQT QEQEGFVLGL ENSBTAP00000027473/1-1164 RPQIFRPREQ LMLRANSLKK AIRQIIEHTE KAVDEQNAQT QEQEGFILSL 651 700 ENSTTRP00000004107/1-1210 SESEEKKDLK SDDRACRRGH GEGHGAAKGR SLRRVSKSPC EKLISKGSLS bmy_19567T0/1-1116 SAGQHR-ALP VSPRT---WR ETQRGPL--- ----LSKSPC EKLISKGSLS BACU010990/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000264057/1-1214 SESEEKMDHR VCPPL---SH SESFGVPKGR SQRKVSKSPC EKLISKGSLS ENSBTAP00000027473/1-1164 SESEKK-DLK SDDRA---GH GEGHSASKGR SLRRVSKSPC EKLISKGSLS 701 750 ENSTTRP00000004107/1-1210 LGGSASLPSQ SGNQDSLPAL NTKILFPNVR AGMSGSLPGG SVISRLLINA bmy_19567T0/1-1116 LGGSASLPSQ SGNRDSLPAL NTKILFPNVR AGMSGSLPGG SVISRLLINA BACU010990/1-480 ---------- ---------- ---------- --MSGSLPGG SVISRLLINA ENSP00000264057/1-1214 LGSSASLPPQ PGSRDGLPAL NTKILYPNVR AGMSGSLPGG SVISRLLINA ENSBTAP00000027473/1-1164 PGGSASLPPQ SGSRDGLPAL NTKILFPNVR AGMSGTLPGG SVISRLLINA 751 800 ENSTTRP00000004107/1-1210 DPFNSEPENL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSRT bmy_19567T0/1-1116 DPFNSEPENL EYYTEKCVMN NYFGIGLDAK ISLDFNNKRD EHPEKCRSRT BACU010990/1-480 DPFNSEPENL EYYTEKCVMN NYFGIGLDAK ISLDFNNKRD EHPEKCRSRT ENSP00000264057/1-1214 DPFNSEPETL EYYTEKCVMN NYFGIGLDAK ISLDFNNKRD EHPEKCRSRT ENSBTAP00000027473/1-1164 DPFNSEPENL EYYTEKCVMN NYFGIGLDAK ISLDFNNKRD EHPEKCRSRT 801 850 ENSTTRP00000004107/1-1210 KNMMWYGVLG TRELLHRTYK NLEQKVLLEC DGRPIPLPSL QGIAVLNIPS bmy_19567T0/1-1116 KNMMWYGVLG TRELLHRTYK NLEQKVLLEC DGRPIPLPSL QGIAVLNIPS BACU010990/1-480 KNMMWYGVLG TRELLHRTYK NLEQKVLLEC DGRPIPLPSL QGIAVLNIPS ENSP00000264057/1-1214 KNMMWYGVLG TKELLHRTYK NLEQKVLLEC DGRPIPLPSL QGIAVLNIPS ENSBTAP00000027473/1-1164 KNMMWYGVLG TRELLHRTYK NLEQKVLLEC DGRPIPLPSL QGIAVLNIPS 851 900 ENSTTRP00000004107/1-1210 YAGGTNFWGG TKEDDTFAAP SFDDKILEVV AVFGSMQMAV SRVIKLQHHR bmy_19567T0/1-1116 YAGGTNFWGG TKEDDTFAAP SFDDKILEVV AVFGSMQMAV SRVIKLQHHR BACU010990/1-480 YAGGTNFWGG TKEDDTFAAP SFDDKILEVV AVFGSMQMAV SRVIKLQHHR ENSP00000264057/1-1214 YAGGTNFWGG TKEDDTFAAP SFDDKILEVV AVFGSMQMAV SRVIRLQHHR ENSBTAP00000027473/1-1164 YAGGTNFWGG TKEDDTFTAP SFDDKILEVV AVFGSMQMAV SRVIKLQHHR 901 950 ENSTTRP00000004107/1-1210 IAQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19567T0/1-1116 IAQCRTVKIS ILGDEGVPVQ VDGEAWIQPP GYIRIIHKNR AQTLTRDRAF BACU010990/1-480 IAQCRTVKIS ILGDEGVPVQ VDGEAWIQPP GYIRIIHKNR AQTLTRDRAF ENSP00000264057/1-1214 IAQCRTVKIS ILGDEGVPVQ VDGEAWVQPP GYIRIVHKNR AQTLTRDRAF ENSBTAP00000027473/1-1164 IAQCRTVKIS ILGDEGVPVQ VDGEAWVQPP GYIRIVHKNR AQTLTRDRAF 951 1000 ENSTTRP00000004107/1-1210 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI bmy_19567T0/1-1116 ENTLKSWEDK QKCELPRPPP FSLHPEILSA EEADQMDRFG RAAGALIHSI BACU010990/1-480 ENTLKSWEDK QKCELPRPPP FSLHPEILST EEADQMDRFG RAAGALIHSI ENSP00000264057/1-1214 ESTLKSWEDK QKCELPRPPS CSLHPEMLSE EEATQMDQFG QAAGVLIHSI ENSBTAP00000027473/1-1164 ENTLKSWEDK QKCELPRAPS FSLHPEILSE EEATQMDQFG QAAGALIHSI 1001 1050 ENSTTRP00000004107/1-1210 REAARXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX---- ---------- bmy_19567T0/1-1116 REIAQSHRDV EQELAHAVNA SSKSMDRVYG RPRTTEVPAL FRSFSCGPLS BACU010990/1-480 REIAQSHRDV EQELAHAVNA SSKSMDRVYG RPRTTE---- ---------- ENSP00000264057/1-1214 REIAQSHRDM EQELAHAVNA SSKSMDRVYG KPRTTE---- ---------- ENSBTAP00000027473/1-1164 RELAQSHQDV EQELAHAVNA SSKSMDRVYG KPRATE---- ---------- 1051 1100 ENSTTRP00000004107/1-1210 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXQLDPP bmy_19567T0/1-1116 PSGRLHSVCS GSSQGLSCSF VLEMVNNVRA LRSETELLLA GKLALQLDPP BACU010990/1-480 ---------- ----GLSCSF VLEMVNNVRA LRSETELLLA GKLALQLDPP ENSP00000264057/1-1214 ---------- ----GLNCSF VLEMVNNFRA LRSETELLLS GKMALQLDPP ENSBTAP00000027473/1-1164 ---------- ----GLSCSL VLEMVNNVRA LRSETELLLA GRLALQLDPP 1101 1150 ENSTTRP00000004107/1-1210 QKERLTAALV EMDQQLRKLA DTPWLCQPVE PGDEENVMLD LSKR--SRSG bmy_19567T0/1-1116 QKERLTAALV EMGQQLRKLA DTPWLCQPVE PGEEENVMLD LSKRSSSRSG BACU010990/1-480 QKERLTAALV EMGQQLRKLA DTPWLCQPVE PGEEENVMLD LSKR--SRSG ENSP00000264057/1-1214 QKEQLGSALA EMDRQLRRLA DTPWLCQSAE PGDEESVMLD LAKR--SRSG ENSBTAP00000027473/1-1164 QKERLTAALA EMDQQLRKLA DTPWLCQPME PGDEENVMLD LSKR--SRSG 1151 1200 ENSTTRP00000004107/1-1210 KFRLVTKFKK EKNNKNREAR SSLGAPVHLW GTEEVAAWLE HLSLCEYKDI bmy_19567T0/1-1116 KFRLVTKFKK EKNNKNREAR SSLGAPVHLW GTEEVAAWLE HLSLCEYKDI BACU010990/1-480 KFRLVTKFKK EKNNKNREAR SSLGAPVHLW GTEEVAAWLE HLSLCEYKDI ENSP00000264057/1-1214 KFRLVTKFKK EKNNKNKEAH SSLGAPVHLW GTEEVAAWLE HLSLCEYKDI ENSBTAP00000027473/1-1164 KFRLVTKFKK EKNNKNRAAR CSLGAPVHLW GTEEVAAWLE HLSLCEYKDI 1201 1250 ENSTTRP00000004107/1-1210 FTRHDIRGSE LLHLERRDLK DLGVTKVGHM KRILCGIKEL SRS------ bmy_19567T0/1-1116 FTRHDIRGSE LLHLERRDLK VLPQRLLG-- -RRTCA---- PRGSPVPSL BACU010990/1-480 FTRHDIRGSE LLHLERRDLK VLPQRLLG-- -RRTCA---- PRGSPVPSL ENSP00000264057/1-1214 FTRHDIRGSE LLHLERRDLK DLGVTKVGHM KRILCGIKEL SRSAPAVEA ENSBTAP00000027473/1-1164 FTRHDIRGSE LLHLERRDLK DLGVTKVGHM KRILCGIKEL SRGAAAAEA