KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:46 2014 Check: 00 .. Name: ENSTTRP00000005609/1-658 Len: 698 Check: 6188 Weight: 1.00 Name: ENSP00000361834/1-689 Len: 698 Check: 3031 Weight: 1.00 Name: ENSBTAP00000027483/1-682 Len: 698 Check: 375 Weight: 1.00 Name: bmy_02079T0/1-618 Len: 698 Check: 5339 Weight: 1.00 Name: BACU000398/1-158 Len: 698 Check: 5896 Weight: 1.00 // 1 50 ENSTTRP00000005609/1-658 ---------- ---------- -----RGPPG ERGPPGPPGP PGP-PGVPGS ENSP00000361834/1-689 MAAATASPRS LLVLLQVVVL ALAQIRGPPG ERGPPGPPGP PGV----PGS ENSBTAP00000027483/1-682 -MAPAADPRS LLVLLQVLGL ALAQIRGLPG EPGPPGPPGP PGV----PGS bmy_02079T0/1-618 -MQCPLLPVG GAGLHHKETV CSTKTSNQPR DAEPVIAAGG QGAAVRSARH BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005609/1-658 DGIDGDKGPP GKAGPPGPKG EPGKAGPDGP AGKPGIDGLT GAKGEPGPMG ENSP00000361834/1-689 DGIDGDNGPP GKAGPPGPKG EPGKAGPDGP DGKPGIDGLT GAKGEPGPMG ENSBTAP00000027483/1-682 DGIDGDKGPP GKAGPPGPKG EPGKAGTDGP DGKPGIDGLT GAKGEPGPAG bmy_02079T0/1-618 SSQRGDKGPP GKAGPPGPKG EPGKAGPDGP DGKPGID--- ---------- BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005609/1-658 IPGVKGQPGL PGPPGLPGPG FAGPPGPAGP VGLPGEMGLT GPKGDPGPDG ENSP00000361834/1-689 IPGVKGQPGL PGPPGLPGPG FAGPPGPPGP VGLPGEIGIR GPKGDPGPDG ENSBTAP00000027483/1-682 IPGVKGQPGL PGPPGLPGPG FAGPPGPPGP VGLPGEIGLT GPKGDPGPEG bmy_02079T0/1-618 -----GQPGL PGPPGLPGPG FAGPPGPPGP VGLPGEMGIT GPKGDPGPEG BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000005609/1-658 PAGPPGPPGK PGRPGIIQGL EGSADF-CPT NCPAGVKGPP GLQGVKGHPG ENSP00000361834/1-689 PSGPPGPPGK PGRPGTIQGL EGSADFLCPT NCPPGMKGPP GLQGVKGHAG ENSBTAP00000027483/1-682 PSGPPGPPGK PGRPGTIQGL EGSADFLCPT NCPAGVKGPP GLQGVKGHPG bmy_02079T0/1-618 PAGPPGPPGK PGRPGTIQGL EGSADFLCPT NCPAGVKGPP GLQGVKGHPG BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000005609/1-658 KRGHLGDSGR QGKPGPKGDV GASGEQGIPG PPGPQGVRGY PGMAGPKGET ENSP00000361834/1-689 KRGILGDPGH QGKPGPKGDV GASGEQGIPG PPGPQGIRGY PGMAGPKGET ENSBTAP00000027483/1-682 RRGLLGDSGR QGKPGPKGDV GASGEQGIPG PPGPQGVRGY PGMAGPKGET bmy_02079T0/1-618 KRGLLGDSGR QGKPGPKGDV GASGEQGIPG PPGPQGVRGY PGMAGPKGET BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000005609/1-658 GPQGYKGMVG SIGAAGSPGE EGPQGPPGRA GEKGDVGSQG IRGPQGITGP ENSP00000361834/1-689 GPHGYKGMVG AIGATGPPGE EGPRGPPGRA GEKGDEGSPG IRGPQGITGP ENSBTAP00000027483/1-682 GPQGYKGMVG SVGAAGSPGE EGPRGPPGRA GEKGDVGSQG VRGPQGITGP bmy_02079T0/1-618 GPHGYKGMVG SIGAAGSPGE EGPPGPPGRA GEKGDVGSQG IRGPQGITGP BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000005609/1-658 KGATGPPGID GKDGTPGTPG TKGIAGQAGR PGNPGHQGLV GVPGQPGTKG ENSP00000361834/1-689 KGATGPPGIN GKDGTPGTPG MKGSAGQAGQ PGSPGHQGLA GVPGQPGTKG ENSBTAP00000027483/1-682 KGATGPPGID GKDGTPGTPG VKGSAGQAGR PGNPGHQGLA GVPGMPGTKG bmy_02079T0/1-618 KGATGPPGID GKDGTPGTPG MKGSAGQVGR PGNPGHQGLV GVPGQPGTKG BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000005609/1-658 GPGDKGEPGR QGFPGVSGSP GKEGEPGPRG EIGPPGIMGQ KGDHGERGPV ENSP00000361834/1-689 GPGDQGEPGP QGLPGFSGPP GKEGEPGPRG EIGPQGIMGQ KGDQGERGPV ENSBTAP00000027483/1-682 GPGDKGEPGR QGFPGVSGPP GKEGEPGPRG EIGPQGIMGQ KGDHGERGPV bmy_02079T0/1-618 GPGDKGEPGR QGFPGVSGSP GKE------- ---------- -GDHGERGPV BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000005609/1-658 GQPGPQGRQG PKGEQGPPGI PGPQGLPGIK GDKGFPGKXX XXXXXXXXXX ENSP00000361834/1-689 GQPGPQGRQG PKGEQGPPGI PGPQGLPGVK GDKGSPGKTG PRGKVGDPGV ENSBTAP00000027483/1-682 GQPGPQGRQG PKGEQGPPGI PGPQGLPGIK GDKVLTGTEN TRER--GLQM bmy_02079T0/1-618 GQPGPQGLQG PKGEQGPPGI PGPQGLPGIK GDK------- ---------- BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000005609/1-658 XXXXXXXXXX RESGEP-PKG QQGVRGEAGY PGPSGDAGTP GVQGYPGLPG ENSP00000361834/1-689 AGLPGEKGEK GESGEPGPKG QQGVRGEPGY PGPSGDAGAP GVQGYPGPPG ENSBTAP00000027483/1-682 LRSPGERFPL GTQPAP---- QQGVRGEPGY PGPSGDAGAP GVQGYPGPPG bmy_02079T0/1-618 ---------- ---------- -QGVRGEAGY PGPSGDAGAP GVQGYPGPPG BACU000398/1-158 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000005609/1-658 PRGLVGNRGL PGQPGRQGVA GRDASDQHIE DVVLKMLQEQ LAEIAVSAKR ENSP00000361834/1-689 PRGLAGNRGV PGQPGRQGVE GRDATDQHIV DVALKMLQEQ LAEVAVSAKR ENSBTAP00000027483/1-682 PRGLVGDRGL PGQPGRQGVA GRDASDQHIE DVVLKMLQEQ LAEMAVSAKR bmy_02079T0/1-618 PRGLAGNRGL PGQPGRQGVA GRDASDQHIE DVVLKMLQEQ LAEMAVSAKR BACU000398/1-158 ---------- ---------- ---------- -----MLQEQ LAEMAVSAKR 551 600 ENSTTRP00000005609/1-658 EALGATGMMG LPGPPGPPGY PGKQGPIGHP GPRGIPGIVG AVGQIGNIGP ENSP00000361834/1-689 EALGAVGMMG PPGPPGPPGY PGKQGPHGHP GPRGVPGIVG AVGQIGNTGP ENSBTAP00000027483/1-682 EALGATGMMG PPGPPGPPGY PGKQGPHGHP GPRGVPGIVG AVGQIGNTGP bmy_02079T0/1-618 EALGATGMMG LPGPPGPPGY PGKQGPIGHP GPRGIPGIVG AVGQIGNTGP BACU000398/1-158 EALGATGMMG LPGPPGPPGY PGKQGPIGHP GPRGIPGIVG AVGQIGNTGP 601 650 ENSTTRP00000005609/1-658 KGKRGEKGDR GEVGRGHPGM PGPPGI---P EAPLQVLDAK VS-VGVDRCP ENSP00000361834/1-689 KGKRGEKGDP GEVGRGHPGM PGPPGIPGLP GRPGQAINGK DGDRGSPGAP ENSBTAP00000027483/1-682 KGKRGEKGDQ GEVGRGHPGM PGPPGIPGLP GRPGQAINGK DGDRGAPGAP bmy_02079T0/1-618 KGKCGEKGDR GEVGRGHPGM PGPPGIPGLP GRPGQAINGK DGDRGVPGAP BACU000398/1-158 KGKCGEKGDR GEVGRGHPGM PGPPGIPGLP GRPGQAINGK DGDRGVPGAP 651 700 ENSTTRP00000005609/1-658 GEAAGL-IPG PMRLVYSSFC EPHLSRKVSG LIGFQSGT-- --GSR--- ENSP00000361834/1-689 GEAGRPGLPG PVGL--PGFC EP---AACLG ASAYASARLT EPGSIKGP ENSBTAP00000027483/1-682 GEAGRPGLPG PIGL--PGFC EP---AACLG ASAYASGRLT EPGSIKGP bmy_02079T0/1-618 GEAGRPGLPG PMGL--PGFC EP---AACLG ASAYTSARLT EPGSIKGP BACU000398/1-158 GEAGRPGLPG PMGL--PGFC EP---AACLG ASAYTSARLT EPGSIKGP