KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:48 2014 Check: 00 .. Name: BACU010169/1-150 Len: 280 Check: 5103 Weight: 1.00 Name: ENSP00000281437/1-279 Len: 280 Check: 7375 Weight: 1.00 Name: bmy_07365T0/1-216 Len: 280 Check: 5059 Weight: 1.00 Name: ENSBTAP00000027509/1-216 Len: 280 Check: 3064 Weight: 1.00 Name: ENSTTRP00000015428/1-261 Len: 280 Check: 6895 Weight: 1.00 // 1 50 BACU010169/1-150 MHCHAELRLS SPGQLKAARR RYKTFMIDEI LSKETCDYFE KLSLYSMCP- ENSP00000281437/1-279 MHCHAELRLS SPGQLKAARR RYKTFMIDEI LSKETCDYFE KLSLYSVCPS bmy_07365T0/1-216 -MEMSKKRNA NPEERELAR- ---------- ---------- ---------- ENSBTAP00000027509/1-216 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015428/1-261 MHCHAELRVS STGQLKAARR RYKTFMIDEI LSKETCEYFE KLSLYSMCPS 51 100 BACU010169/1-150 ---------- ---SLVVRPK PLHSCTGREE GARELWAPAR ---GLDLSEA ENSP00000281437/1-279 LVVRPKPLHS CTGSPSLRAY PLLSVITRQP TVISHLVPAT PGIAQALSCH bmy_07365T0/1-216 ---------- ---PASLRAY PLLSVITRQP TVIPHLVPAT PGIAQALSHH ENSBTAP00000027509/1-216 ---------- --GPTSLRAY PLLSVITRQP TVISHLVPTT PGIAQVLSRH ENSTTRP00000015428/1-261 LVVRPKPLHS CTGPASLRAY PLLSVITRQP TVIPHLVPAT PGVAQALSRH 101 150 BACU010169/1-150 SIAEASATWK GPGKVSMARL ERQSRQRAPE RRPPRSAWDL -----LAGEP ENSP00000281437/1-279 QVTEAVSA-E APGGEALASS ESETEQPTPR QKKPRRSRTI FTELQLMGLE bmy_07365T0/1-216 PGAEATSA-E AAG-ENHGSS ESETEQPTPR QKKPRRSRTI FTELQLMGLE ENSBTAP00000027509/1-216 PATEAASA-E APG-ENHGSS ESETEQPTPR QKKPRRSRTI FTELQLMGLE ENSTTRP00000015428/1-261 PAAEATSA-E AAG-ENHGSS ESETEQPTPR QKKPRRSRTI FTELQLMGLE 151 200 BACU010169/1-150 SSF------- -PALL----- ---------- WFFRKKVQ-- ---------- ENSP00000281437/1-279 KKFQKQKYLS TPDRLDLAQS LGLTQLQVKT WYQNRRMKWK KMVLKGGQEA bmy_07365T0/1-216 KKFQKQKYLS TPDRLDLAQS LGLTQLQVKT WYQNRRMKWK KM-------- ENSBTAP00000027509/1-216 KKFQKQKYLS TPDRLDLAQS LGLTQLQVKT WYQNRRMKWK KMVLKGGQEA ENSTTRP00000015428/1-261 KKFQKQKYLS TPDRLDLAQS LGLTQLQVKT WYQNRRMKWK KMVLKGGQEA 201 250 BACU010169/1-150 ---------- ---------- ---------- ---------- ---------- ENSP00000281437/1-279 PTKPKGRPKK NSIPTSEEIE AEEKMNSQAQ GQEQLEPSQG QEELCEAQEP bmy_07365T0/1-216 ---------K NSIPTSEEIE AEEKLNSQAQ SKERWEPSQG QEGLCDTQEP ENSBTAP00000027509/1-216 PTKPKGRPKK NSIPTSEEIE AEEKLNSQVH SQELLEPSQS LEGLCDMQKP ENSTTRP00000015428/1-261 PTKPKGRPKK NSIPTSEEIE AEEKLNSQAQ SKELWEPSQG QEGLCDTQKP 251 300 BACU010169/1-150 -----TLDLV QH-------- ---------- ENSP00000281437/1-279 KARDVPLEMA EPPDPPQELP IPSSEPPPLS bmy_07365T0/1-216 KGHGVPVEVA EPLGQPQELP VASSEPPPSS ENSBTAP00000027509/1-216 KARVVPVEVA ESPGQAQELP VASPEPPPSS ENSTTRP00000015428/1-261 KVHGVPAEVA EPL------- ----------