KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:50 2014 Check: 00 .. Name: ENSTTRP00000012483/1-1173 Len: 1218 Check: 7422 Weight: 1.00 Name: ENSP00000386764/1-1189 Len: 1218 Check: 1267 Weight: 1.00 Name: ENSBTAP00000027514/1-1169 Len: 1218 Check: 7710 Weight: 1.00 Name: bmy_09022T0/1-1153 Len: 1218 Check: 3511 Weight: 1.00 Name: BACU017748/1-857 Len: 1218 Check: 758 Weight: 1.00 // 1 50 ENSTTRP00000012483/1-1173 ---------- ---------- -----EDGEL EDGEIDDAGF EETQEQEAKE ENSP00000386764/1-1189 ---------- -MTDSEHAGH DR---EDGEL EDGEIDDAGF EEIQEKEAKE ENSBTAP00000027514/1-1169 ---------- -LKIDTFIAF YR---EDGEL EDGEIDDAGF EETQEQEAKE bmy_09022T0/1-1153 MYWVKDKDKS DLKADQLVNL HFKILEDGEL EDGEIDDAGF EETQEQEAKE BACU017748/1-857 ---------- ---------- -----EDGEL EDGEIDDAGF EETQEQEAKE 51 100 ENSTTRP00000012483/1-1173 DEKQKNEKAY RKSRKKHKKE KEKKKSKRRK RE-------- ------KHKH ENSP00000386764/1-1189 NEKQKSEKAY RKSRKKHKKE REKKKSKRRK RE-------- ------KHKH ENSBTAP00000027514/1-1169 DEKQKNQKAY RKSRKKHKKE KEKKKSKRRK RE-------- ------KHKH bmy_09022T0/1-1153 DEKQKNEKAY RKSRKKHKKE KEKKKSKRRK LSFSYYWTWR FFVINLEGQH BACU017748/1-857 DEKQKNEKAY RKSRKKHKKE KEKKKSKRRK RE-------- ------KHKH 101 150 ENSTTRP00000012483/1-1173 NSPSSDDSSD YSVDSEVEHT ESSHRKRSGF YRDYDIPFPQ XXXXXXXXXX ENSP00000386764/1-1189 NSPSSDDSSD YSLDSDVEHT ESSHKKRTGF YRDYDIPFTQ RGHISGSYIT ENSBTAP00000027514/1-1169 NSPSSDDSSD YSLDSEVEHT ETSHRKRSGF YRDYDIPFSQ HGHISGSYMA bmy_09022T0/1-1153 NSPSSDDSSD YSLDSE---- ---------- ---------- HGHISGSYMA BACU017748/1-857 NSPSSDDSSD YSLDSEVEHT ESSHRKRSGF YRDYDIPFPQ HGHISGSYMA 151 200 ENSTTRP00000012483/1-1173 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386764/1-1189 SKKGQHNKKF KSKEYDEYST YSDDNFGNYS DDNFGNYGQE TEEDFANQLK ENSBTAP00000027514/1-1169 SKKSQHNRKF KSKDYDEYST YSDDNFGSYS --------QE TEEDFASQLK bmy_09022T0/1-1153 SKKSQHNRKF KSKEYDEYST YSDDNFGNYS DDNFGNYSQE TEEDFASQLK BACU017748/1-857 SKKSQHNRKF KSKEYDEYST YSDENFGNYS DENFGNYSQE TEEDFASQLK 201 250 ENSTTRP00000012483/1-1173 XXXXAKE-SN TALGSSFSKE PGKKQRLKGI QQGIEQRVKS FNVARGRGLP ENSP00000386764/1-1189 QYRQAKETSN IALGSSFSKE SGKKQRMKGV QQGIEQRVKS FNVGRGRGLP ENSBTAP00000027514/1-1169 QYRQAKETSN TSLGSSFSKE PGKKQRLKGI QQGTEQRVKS FNVARGRGL- bmy_09022T0/1-1153 QYRQAKETSN TALGSSFSKE PGKKQRLKGI QQGIEQRVKS FNVARGRGLP BACU017748/1-857 QYRQAKETSN TALGSSFSKE PGKKQRLKGI QQGIEQRVKS FNVARGRGLP 251 300 ENSTTRP00000012483/1-1173 KKIKRKDRGG RANKGPNVFS GTDDFQEYSK PGKKWKVMTQ EFINQHTVEH ENSP00000386764/1-1189 KKIKRKERGG RTNKGPNVFS VSDDFQEYNK PGKKWKVMTQ EFINQHTVEH ENSBTAP00000027514/1-1169 EKIKRKDRGG RVNKGPNVFS GTDDYHEYSK PGKKWKIMTQ EFINQHTVEH bmy_09022T0/1-1153 KKIKRKDRGG RANKGPNVFS GTDDFQEYSK PGKKWKVMTQ EFINQHTVEH BACU017748/1-857 KKIKRKDRGG RANKGPHVFS GTDDFQEYSK PGKKWKVMTQ EFINQHTVEH 301 350 ENSTTRP00000012483/1-1173 KGKQICKYFL EGRCIKGDQC KFDHDAELEK RKEICKFYLQ GYCTKGENCI ENSP00000386764/1-1189 KGKQICKYFL EGRCIKGDQC KFDHDAELEK RKEICKFYLQ GYCTKGENCI ENSBTAP00000027514/1-1169 KGKQICKYFL EGRCIKGDQC KFDHDAELEK RKEICKFYLQ GYCTKGENCI bmy_09022T0/1-1153 KGKQICKYFL EGRCIKGDQC KFDHDAD--- ---------- ---------- BACU017748/1-857 KGKQICKYFL EGRCI----- ---------- ---------- ---------- 351 400 ENSTTRP00000012483/1-1173 YMHNEFPCKF YHSGAKCYQG DNCKFSHDDL TKETKKLLDK VLNTEEEATN ENSP00000386764/1-1189 YMHNEFPCKF YHSGAKCYQG DNCKFSHDDL TKETKKLLDK VLNTDEELIN ENSBTAP00000027514/1-1169 YMHNEFPCKF YHSGAKCYQG DNCKFSHDDL TKETKKLLDK VLNT-EEAAN bmy_09022T0/1-1153 ---------- ---GAKCYQG DNCKFSHDDL TKETKKLLDK VLNTEEEATN BACU017748/1-857 ---------- ---------- ---------- ---------K VLNTEEEATN 401 450 ENSTTRP00000012483/1-1173 EDERELEELR KRGITPLPKP PPGVGLLPTP PEHFPFSDPE DDFQTDLSDD ENSP00000386764/1-1189 EDERELEELR KRGITPLPKP PPGVGLLPTP PEHFPFSDPE DDFQTDFSDD ENSBTAP00000027514/1-1169 EDERELEELR KHGITPLPKP PPGVGLLPTP LEHFPFSDPE DGFQTDLSDD bmy_09022T0/1-1153 EDERELEELR KRGITPLPKP PPGVGLLPTP PEHFPFSDPE DDFQTDLSDD BACU017748/1-857 EDERELEELR KRGITPLPKP PPGVGLLPTP PEHFPFSDPE DDFQTDLSDD 451 500 ENSTTRP00000012483/1-1173 FKKIPSLFEI VVKPTVDLAH KIGKKPPAFY NSASPPGPQF QESSPHTQHM ENSP00000386764/1-1189 FRKIPSLFEI VVKPTVDLAH KIGRKPPAFY TSASPPGPQF QGSSPHPQHI ENSBTAP00000027514/1-1169 FKKIPSLFEI VVKPTVDLAH KIGKKPPAFY NSASPPGPQF QESSPHPQHV bmy_09022T0/1-1153 FKKIPSLFEI VVKPTVDLAH KIGKKPPAFY NSASPPGPQF QESSPHTQHM BACU017748/1-857 FKKIPSLFEI VVKPTVDLAH KIGK------ ---------- ---------- 501 550 ENSTTRP00000012483/1-1173 YSSGSSPGPG PNMSQGHNSP VMHPGSPGHH PCAGPPGLPM PQSPPLPPGP ENSP00000386764/1-1189 YSSGSSPGPG PNMSQGHSSP VMHPGSPGHH PCAGPPGLPV PQSPPLPPGP ENSBTAP00000027514/1-1169 YSSGSSPGPG PNMSQGHNSP VIHPGSPGHC -----PGLPV PQSPPLLPGP bmy_09022T0/1-1153 YSSGSSPGPG PNMSQGHNSP VMHPGSPGHH PCAGPPGLPM PQSPPLPPGP BACU017748/1-857 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000012483/1-1173 PGIVGPHSQA GVLVQPDTPL TPPNMSGAYH CPGFPEHMMK VPRENHCSPG ENSP00000386764/1-1189 PEIVGPQNQA GVLVQPDTSL TPPSMGGAYH SPGFPGHVMK VPRENHCSPG ENSBTAP00000027514/1-1169 PGTVGPHGQA GVLGQPDTPL TPPNMSGAYH CPGFPEHVMK VPRENHCSPG bmy_09022T0/1-1153 PGIVGPHSQA GVLVQPDTPL TPPNMSGAYH CPGFPEHMMK VPRENHCSPG BACU017748/1-857 ---------- ---------- ---------- ---------- ----NFC--- 601 650 ENSTTRP00000012483/1-1173 SSHLQSPGEM QLNTNYESLQ NPAEFYDNYY SQHAVHNFQP PNNSGDGTWH ENSP00000386764/1-1189 SSYQQSPGEM QLNTNYESLQ NPAEFYDNYY AQHSIHNFQP PNNSGDGMWH ENSBTAP00000027514/1-1169 SSHP--PGER QLSTSYESLQ NPTEFYDHYY SQHAVHNFQP PSHSGDGVWH bmy_09022T0/1-1153 SSHLQSPGEM QLNTNYESLQ NPAEFYDNYY SQHAVHNFQP PNNSGDGTWH BACU017748/1-857 -LHL------ ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000012483/1-1173 GEFAQHQPPI VQDSPTRGSG SDSSSNVTGH GPLPAPGLLP AVQRALFVRL ENSP00000386764/1-1189 GEFAQQQPPV VQDSPNHGSG SDGSSTRTGH GPLPVPGLLP AVQRALFVRL ENSBTAP00000027514/1-1169 GDFAQHQAPV VPDSPNRGSG SDSSSKVAGH GALPALGLLP AVQRALFVRL bmy_09022T0/1-1153 GEFAQHQPPI VQDSPTRGSG SDSSGNVTGH GPLPAPGLLP AVQRALFVRL BACU017748/1-857 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000012483/1-1173 TQKYQEDEEP GSTQPQRAPS KEEXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386764/1-1189 TQRYQEDEEQ TSTQPHRAPS KEEDDTVNWY SSSEEEEGSS VKSILKTLQK ENSBTAP00000027514/1-1169 TQKYQEDEEP SSTQPQRAPS KEEDETVNWY SSSEEEEGSS VKSILRTLQK bmy_09022T0/1-1153 TQKYQEDEEP GSTQPQRAPS KEEDDTVNWY SSSEEEEGSS VKSILKTLQK BACU017748/1-857 ---------- ---------- ---DDTVNWY SSSEEEEGSS VKSILKTLQK 751 800 ENSTTRP00000012483/1-1173 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386764/1-1189 QTETLRNQQQ PSTELSTPTD PRLAKEKSKG NQVVDPRLRT IPRQDIRKPS ENSBTAP00000027514/1-1169 QTETLRSQQQ PSTELGTPTD PRLAREKNKG NQVVDPRLRT ISRQDIRKSS bmy_09022T0/1-1153 QTETLRSQQQ PSTELSTPTD PRLAKEKNKG SQVVDPRLRT ISRQDVRKSS BACU017748/1-857 QTETLRSQQQ PSTELSTPTD PRLAKEKNKG SQVVDPRLRT ISRQDVRKSS 801 850 ENSTTRP00000012483/1-1173 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386764/1-1189 ESAPLDLRLA WDPRKLRGNG SGHIGSSVGG AKFDLHHANA GTNVKHKRGD ENSBTAP00000027514/1-1169 ESAPLDLRLA WDPRKLRGNG SGHGSSSAGG AKFDSHHGNT GPNIRHKRGD bmy_09022T0/1-1153 ESTPLDLRLA WDPRKLRGNG SGHVGSSVGG AKFDLHHGNA GPNVKHKRGD BACU017748/1-857 ESTPLDLRLA WDPRKLRGNG SGHVGSSVGG AKFDLHHGNA GPNVKHKRGD 851 900 ENSTTRP00000012483/1-1173 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000386764/1-1189 DDDEDTEREL REKAFLIPLD ASPGIMLQDP RSQLRQFSHI KMDITLTKPN ENSBTAP00000027514/1-1169 DDDEDTEREL REKAFLIPLD SSPGVMLQDP RSQLRQFSHI KMDITLTKPN bmy_09022T0/1-1153 DDDEDTEREL REKAFLIPLD SSPGIMLQDP RSQLRQFSHI KMDITLTKPN BACU017748/1-857 DDDEDTEREL REKAFLIPLD SPPGITLQDP RSQLRQFSHI KMDITLTKPN 901 950 ENSTTRP00000012483/1-1173 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PPLIADQRLS RLWNTKSDLR ENSP00000386764/1-1189 FAKHIVWAPE DLLPVPLPKP DPVSSINLPL PPLIADQRLN RLWNTKSDLH ENSBTAP00000027514/1-1169 FAKHIVWAPE DLLPVPLPKP DPVSSINLPL PPLIADQRLS RLWNTKSDLR bmy_09022T0/1-1153 FAKHIVWAPE DLLPVPLPKP DPVSSINLPL PPLIADQRLS RLWNTKSDLR BACU017748/1-857 FAKHIVWAPE DLLPVPLPKP DPVSSINLPL PPLIADQRLS RLWNTKSDLR 951 1000 ENSTTRP00000012483/1-1173 QSTVPTDAKL AGKAKINPAN REGYLEQFGD AHSSGSKLGD PRLQKSFDPR ENSP00000386764/1-1189 QNTVSIDPKL AAKAKINTTN REGYLEQFGD SHGSGAKLGD PRLQKNFDPR ENSBTAP00000027514/1-1169 QDTVPTDRKL AAKAKMNTAN REGYPDQFGD SHSSGSKLGD PRLQKNFDPR bmy_09022T0/1-1153 QSTVATDAKL AAKAKINTAN REGYLEQFGD LHSSGSKLGD PRLQKNFDPR BACU017748/1-857 QSTVATDAKL AAKAKINTAN REGYLEQFGD LHSSGSKLGD PRLQKNFDPR 1001 1050 ENSTTRP00000012483/1-1173 LHRLHSTESH QAVMKDSHTS KGAPHV-ARS NSGSSQPLGA VSSNSGPGAL ENSP00000386764/1-1189 LHRLPNTESH QVVMKDSHAS KGAPHL-PRS NPGSSQPSGA GTSNSGSGAL ENSBTAP00000027514/1-1169 LHRLHNTEPH QAVMKDPHMS KTAPPLGTRS NLGSSQPSGA VPSSSGPGAL bmy_09022T0/1-1153 LHRLHNTESH QAVMKDSHTS KGAPHL-XRS NSGSSQPLGA VSSNSGPGAL BACU017748/1-857 LHRLHNTESH QAVMKDSHTS KGAPHL-ARS NSGSSQPLGA VSSNSGPGAL 1051 1100 ENSTTRP00000012483/1-1173 PPYAPKLSSS AGLPLGTPGS VLSAISLYDP REHSSSSTSE PAT----ENA ENSP00000386764/1-1189 PPYAPKLSSS AGLPLGTSTS VLSGISLYDP RDHGSSSTSE LATASSGENS ENSBTAP00000027514/1-1169 PPYAPKLSSS TGLPLGTPGS VLSGISLYDP REQGSSSTSE LAA----ENV bmy_09022T0/1-1153 PPYAPKLSSS AGLPLGTPGS VLSGISLYDP REHSSSSTSE LAT----ENA BACU017748/1-857 PPYAPKLSSS AGLPLGTPGS VLSGISLYDP REHSSSSTSE LAT----ENA 1101 1150 ENSTTRP00000012483/1-1173 ESQKKSGGLK SSDKNEPPTG EAVLPQKIAP NVDVPVDGPA DPEADILGSS ENSP00000386764/1-1189 KNQKKSGGLK SSDKTEPSPG EAILPQKPSP NVGVTLEGPA DPQADVPRSS ENSBTAP00000027514/1-1169 ENQKKSRSLK CSDKNEPPPG ESILPQKMAP NVDVPVDRPA DPQTDVRRSS bmy_09022T0/1-1153 ENQKKSGGLK SSDKNEPPPG EVVLPQKIAP NVDVTVDGPA DPQADVLGSC BACU017748/1-857 ENQKKSGGLK SSDKNEPPPG EAVLPQKIAP NVDVTVDGPA DPQADILGSS 1151 1200 ENSTTRP00000012483/1-1173 GTVQVPAVHS LPIQALTGLI RPQYSDPRQS KQPGQVSPTP DDDPRRATDD ENSP00000386764/1-1189 GKVQVPAVHS LPVQALTGLI RPQYSDPRQA RQPGQGSPTP DNDPGRETDD ENSBTAP00000027514/1-1169 GTVQVPAVHS LPIQALTGLI RPQYSDPRQS KHLGQVSPTP GDDPSKETDD bmy_09022T0/1-1153 GTVQVPAVHS LPIQALTGLI RPQYSDPRQS KQPGQVSPTP DDDPRRATDD BACU017748/1-857 GTVQVPAVHS LPIQALTGLI RPQYSDPRQS KQPGQVSPTP DDDPRRATDD 1201 1250 ENSTTRP00000012483/1-1173 KSLKEVFKTF DPTASPFC ENSP00000386764/1-1189 KSLKEVFKTF DPTASPFC ENSBTAP00000027514/1-1169 KSLKEVFKTF DPTASPFC bmy_09022T0/1-1153 KSLKEVFKTF DPTASPFC BACU017748/1-857 KSLKEVFKTF DPTASPFC