KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:32:51 2014 Check: 00 .. Name: ENSP00000316328/1-1130 Len: 1213 Check: 4791 Weight: 1.00 Name: ENSBTAP00000027518/1-1162 Len: 1213 Check: 7114 Weight: 1.00 Name: BACU012964/1-108 Len: 1213 Check: 5270 Weight: 1.00 Name: bmy_06495T0/1-1145 Len: 1213 Check: 271 Weight: 1.00 Name: ENSTTRP00000004460/1-1159 Len: 1213 Check: 2784 Weight: 1.00 // 1 50 ENSP00000316328/1-1130 ---------- ---------- ---------- ---------- MRCLAPRPAG ENSBTAP00000027518/1-1162 MNHFQTILSQ VRMLLSSHRP SQVQALLDNL LAEELLSREY HHALLHESDG BACU012964/1-108 MNHFQTILSQ VRMLLSSHRP SQVQALLDNL LAEDLLSREY HYALLHEPDG bmy_06495T0/1-1145 ---------- --MLLSSHRP SQVQVLLDNL LAEDLLSREY HYALLHEPDG ENSTTRP00000004460/1-1159 MNHFQTILSQ VRMLLSSHRP SQVQALLDNL LAEDLLSREY HYALLHEPDG 51 100 ENSP00000316328/1-1130 SYLSE----- ---------- ---------- ---------- --PQGSSQCA ENSBTAP00000027518/1-1162 EALARKISLT LLEKGDPDFA LLGWIWSGLQ APTAERGPSY KDPGGSGQCP BACU012964/1-108 EALARKISLT LMEKGDPDLA PLGWIWSGLQ APAAERDSGY KDPGGK---- bmy_06495T0/1-1145 EALARKISLT LMEKGDPDLA PLGWIWSGLQ APAAERDSGY KDPGGSGQHT ENSTTRP00000004460/1-1159 EALARKISLT LMEKGDPDLA PLGWIWSGLQ APAAERDSGY KDPGGSGQHT 101 150 ENSP00000316328/1-1130 TMELGPLEGG YLELLNSDAD PLCLYHFYDQ MDLAGEEEIE LYSEPDTDTI ENSBTAP00000027518/1-1162 TMELGPLEGS YLELLNSSAD PLQLYHLYDR MDLTGEEEIE LCSEPDTDTI BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 TMELGPLEGG YLELLNSNAD PLQLYHLYDR MDLAGEEEIE LCSEPDTDTI ENSTTRP00000004460/1-1159 TMELGPLEGG YLELLNSNAD PLHLYHLYDR MDLAGEEELE LCSEPDTDTI 151 200 ENSP00000316328/1-1130 NCDQFSRLLC DMEGDEETRE AYANI---AE LDQYVFQDSQ LEGLSKDIF- ENSBTAP00000027518/1-1162 NCEQFSRLLC DMEGDEETRE AYANIVWAAE LDQYVFQDTQ LEGLSKDIFI BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 NCEQFSRLLC DMEGDEETRE AYANI----- ---------- ---------V ENSTTRP00000004460/1-1159 NCEQFSRLLC DMEGDEETRE AYANI---AE LDQYVFQDSQ LEGLSKDIFI 201 250 ENSP00000316328/1-1130 KHIGPDEVIG ESMEMPAEVG QKSQKRPFPE ELPADLKHWK PAEPPT--VV ENSBTAP00000027518/1-1162 EHIGLEEMIS ESVELLEEAG QKSQKRPFPE ELPVDLKHRK L--------- BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 EHIGLEEMIS ESVEVLEEAG QKSQKRPFPE ELPVDLKHRK LAEPLAMPVV ENSTTRP00000004460/1-1159 EHIGLEEMIS ESVEVLEEAG QKSQKRPFPE ELPVDLKHRK L--------- 251 300 ENSP00000316328/1-1130 TGSLLVRPVS DCSTLPCLPL PALFNQEPAS GQMRLEKTDQ IPMPFSSSSL ENSBTAP00000027518/1-1162 ---------- ---------- ---------- ---------- --APPSSSLL BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 TGAFLVGLVS DSSAQPCPSP PALFNKEPAS SQTRLKDT-- --APPSSSLL ENSTTRP00000004460/1-1159 ---------- ---------- ---------- ---------- --VPPSSSLL 301 350 ENSP00000316328/1-1130 SCLNLPEGPI QFVPTISTLP HGLWQISEAG TGVSSIFIYH GEVPQASQVP ENSBTAP00000027518/1-1162 SCLSLPAGPI QIIPTLPTLP QGLWPISGTG TGVSSILIYQ SEMPPASQTP BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 SCLSLPAAPI QIIPTLSTLP QGLWQISGAG TGVSSILIYQ GEVLQASQTX ENSTTRP00000004460/1-1159 SCLSLPAGPI QIIPTLSTLP QGLWQISGAG TGVSSILIYQ GEMPQASQTP 351 400 ENSP00000316328/1-1130 PPSGFTVHGL PTSPDRPGST SPFAPSATDL PSMPEPALTS RANMTEHKTS ENSBTAP00000027518/1-1162 PSSGPAVQSL PKSPDRPGSA SPFAPSAADL PSMPEPALTS RAGLTEDEMS BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 PSSSPAVYSL PKSPDRPGST SPFAPSAADL PSMPEPALTS RANLTVDEMS ENSTTRP00000004460/1-1159 ASSSTAVHSL PKSPDRPGST SPFAPSAADL PSMPEPALTS RTNLTEDEMS 401 450 ENSP00000316328/1-1130 PTQCPAAGEV SNKLPKWPEP VEQFYRSLQD TYGAEPAGPD GILVEVDLVQ ENSBTAP00000027518/1-1162 PTKCPAAGGA SSKLPKWPES VEQFYQSLRD KYQAQPTGPE GTLVDMDLVR BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 PTQCPAAHKA SSKLPKWPES VEQFYCSLRN KYQAKPAGPE GILVEVDLVR ENSTTRP00000004460/1-1159 PTQCPAAHEA SSKLPKWPES VEQFYCSLRN KYQAKPAGPE GILVEVDLVR 451 500 ENSP00000316328/1-1130 ARLERSSSKS LERELATPDW AERQLAQGGL AEVLLAAKEH RRPRETRVIA ENSBTAP00000027518/1-1162 VRLEKSSGKS QERELATLDW AERQPARGGL AEVLLAASDR QQPRETRVIA BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 VRLERSGGKS QDRELTTLDW AERQPARGGL GEVLLASSNH RRPRETQVIA ENSTTRP00000004460/1-1159 VRLERSGGKS QDRELTTLDW AERQPARGSL GEVLLASSNH RRPRETQVIA 501 550 ENSP00000316328/1-1130 VLGKAGQGKS YWAGAVSRAW ACGRLPQYDF VFSVPCHCLN RPGDAYGLQD ENSBTAP00000027518/1-1162 VLGKAGHGKS HWARAVSRAW AHGQLPQYDF VFCVPCHRLD RPGTSYRLQD BACU012964/1-108 ---------- ---------- ---------- -----CHPL- ---------- bmy_06495T0/1-1145 VLGKAGQGKS HWVQAVSWAW ACGQLPQYDF IFCIPCHCLD RPGDTYRLQD ENSTTRP00000004460/1-1159 VLGKAGQGKS HWVQAVSWAW ACGQLPQYDF IFCIPCHCLD RPGDTYRLQD 551 600 ENSP00000316328/1-1130 LLFSLGPQPL VAADEVFSHI LKRPDRVLLI LDGFEELEAQ DGFLHSTCGP ENSBTAP00000027518/1-1162 LLSSLGPQPL PVDDEVLSYI ARRPNRILLI LDGFEDLEAH DGSLHSTGGP BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 LLFSLGSQPL SGDDEVFSYI LRRPDRILLI LDAFEELEAQ DGFLHSAGGP ENSTTRP00000004460/1-1159 LLFSLGSQPL SVDDEVFSYI LRRPDRILLI LDAFEELEAQ DGFLHSAGGP 601 650 ENSP00000316328/1-1130 APAEPCSLRG LLAGLFQKKL LRGCTLLLTA RPRGRLVQSL SKADALFELS ENSBTAP00000027518/1-1162 GSAEPRSLRG LLAGLLQRKL LRGCTLLLTA WPRGRLAQSL SKVDALFEVA BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 MSAEFRSLRG LLASLFQRKL LRGCTLLLTA RPRGRLAQSL SKADALFEVA ENSTTRP00000004460/1-1159 TSAEARSLRG LLAGLFQRKL LRGCTLLLTA RPRGRLAQSL SKADALFEVA 651 700 ENSP00000316328/1-1130 GFSMEQAQAY VMRYFESSGM TEHQDRALTL LRDRPLLLSH SHSPTLCRAV ENSBTAP00000027518/1-1162 GFSAQQVETY VRRYFESEGT AEHQERALAL LQARPFLLSH SHSPTVCRTV BACU012964/1-108 -FS------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 GFSAQQAETY VMRYFECSGA TEHQKRALAL LQSQPFLLSH SHSPTVCRAV ENSTTRP00000004460/1-1159 GFSAQQAETY VMRYFECSGT TEHQKRALAL LQSQPFLLSH SHSPTVCRAV 701 750 ENSP00000316328/1-1130 CQLSEALLEL GEDAKLPSTL TGLYVGLLGR AALDSPPGAL AELAKLAWEL ENSBTAP00000027518/1-1162 CQLAEALLQR SDEAQLPSTL TGLYVGLLGP AARDSPPGAL AELARLAWEL BACU012964/1-108 ---------- ---------- ---------- ---------- -------WS- bmy_06495T0/1-1145 CQLSEALLEL GDEAQLPSTL TGLYVGLLGP GARDSPPGAL VGLARLAWEL ENSTTRP00000004460/1-1159 CQLLEALLEL GDEAQLPSTL TGLYVGLLGP GARDSPPGAL VGLARLAWEL 751 800 ENSP00000316328/1-1130 GRRHQSTLQE DQFPSADVRT WAMAKGLVQH PPRAAESELA FPSFLLQCFL ENSBTAP00000027518/1-1162 GRVHQRGLKA GCLPSAEARA WAVAQGWLRP TPGAPETELA FSSFLLQCFL BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 GRGHQSSLRE GQFPSAEVRA WAVAQGLVQP TPGAPETELA FSSFLLQCFL ENSTTRP00000004460/1-1159 GRGHQSSLRE GQFPSAEVRV WAVAQGLVQP TPGAPETKLA FSSFLLQCFL 801 850 ENSP00000316328/1-1130 GALWLALSGE IKDKELPQYL ALTPRKKRPY DNWLEGVPRF LAGLIFQPPA ENSBTAP00000027518/1-1162 GAVWLALSGE IKDKELPQYL ALTPRKKRPY DNWLEGVPRF LVGLVFQPRA BACU012964/1-108 ---------- ---------- ---------- NTWL------ ---------- bmy_06495T0/1-1145 GAVWLALSSE IKDKELPQYL ALTPRKKRPY DNWLEGVPRF LVGLVFQPRA ENSTTRP00000004460/1-1159 GAMWLALSSE IKDKELPQYL ALTPRKKRPY DNWLEGVPRF LVGLVFQPRA 851 900 ENSP00000316328/1-1130 RCLGALLGPS AAASVDRKQK VLARYLKRLQ PGTLRARQLL ELLHCAHEAE ENSBTAP00000027518/1-1162 GCLGALAGPA ATTSADRKQK VLTRYLKRLQ PGTLQAGRLL ELLHCAHEAL BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 RCLGALAGLA ASTSADRKQK VLTRYLKRLQ PGTLKAGRLL ELLHCAHEAL ENSTTRP00000004460/1-1159 CCLGALAGLA GSTSAVRKQE VLTRYLKRLQ PGALKAGRLL ELLHCAHEAL 901 950 ENSP00000316328/1-1130 EAGIWQHVVQ ELPGRLSFLG TRLTPPDAHV LGKALEAAGQ DFSLDLRSTG ENSBTAP00000027518/1-1162 DPGLWQHVLQ GLPARLSFLG TRLTPPDTHV LGSALEAAGR DFSLDLRSTG BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 DAGLWQHVLQ GLPAHLSFLG TRLTPPDTHV LGSALEAAGR DFSLDLRSTG ENSTTRP00000004460/1-1159 DAGLWQHVLQ GLPAHLSFLG TRLTPPDTYV LGSALEAAGR DFSLDLRSTG 951 1000 ENSP00000316328/1-1130 ICPSGLGSLV GLSCVTRFRA ALSDTVALWE SLQQHGETKL LQAAEEKFTI ENSBTAP00000027518/1-1162 VDASGLGSLV GLSCVTRFRA ALSDTVELWE SLQQRGEAKL LRAVEEKFTI BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 VDPSGLGSLV GLSCVTHFRA ALSDTVQLWE SLQQHGEAKL LRAVKEKFTI ENSTTRP00000004460/1-1159 VDPSGLGSLV GLSCVTHFRA ALSDTVELWE SLQQHGEAKL LRAVKEKFTI 1001 1050 ENSP00000316328/1-1130 EPFKAKSLKD VEDLGKLVQT QRTRSSSEDT AGELPAVRDL KKLEFALGPV ENSBTAP00000027518/1-1162 EPFKAKSMKD VEDLGNLVQI QRTRSSSEAA AGELPAVRDL KKLEFALGPV BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 EPFKAESMKD VEDLGNLVQI QRTRSSSEDT PGELPAIRDL MKLEFALGPI ENSTTRP00000004460/1-1159 EPFKAESMKD VEDLGNLVQI QRTRSSSEDT PGELPAIRDL KKLEFALGPI 1051 1100 ENSP00000316328/1-1130 SGPQAFPKLV RILTAFSSLQ HLDLDALSEN KIGDEGVSQL SATFPQLKSL ENSBTAP00000027518/1-1162 LGPQVFPKLV KILEAFTSLQ HLDLDSLSEN KIGDEGVAQL SATFPQLKAL BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 LGPQAFPKLV KILEAFSSLQ HLDLDSLSEN KIGDEGVAQL SATFPQLKAL ENSTTRP00000004460/1-1159 LGPQAFPKLV KILEAFSSLQ HLDLDSLSEN KIGDEGVAQL SATFPQLKAL 1101 1150 ENSP00000316328/1-1130 ETLNLSQNNI TDLGAYKLAE ALPSLAASLL RLSLYNNCIC DVGAESLARV ENSBTAP00000027518/1-1162 ETLNLSQNNI TDVGACKLAE ALPALATSLL RLSLYNNCIC DAGAESLAHA BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 ETLNLSQNNI TDLGACKLAE ALPLLAASLL RLSLYNNCIC DVGAESLAHV ENSTTRP00000004460/1-1159 ETLNLSQNNI TDLGACKLAE ALPLLAASLL RLSLYNNCIC DAGAESLAHV 1151 1200 ENSP00000316328/1-1130 LPDMVSLRVM DVQYNKFTAA GAQQLAASLR RCPHVETLAM WTPTIPFSVQ ENSBTAP00000027518/1-1162 LPDMVSLRVL DVQYNKFTAA GAQQLAAGLR KCPQVKTLAM WTPTIPFGVQ BACU012964/1-108 ---------- ---------- ---------- ---------- ---------- bmy_06495T0/1-1145 LPDMVSLRVL E--------- ---------- ---------M WTPTIPFGVQ ENSTTRP00000004460/1-1159 LPDMVSLRVL DVQYNKFTAA GAQQLTASLR KCPHVEKLAM WTPTIPFGVQ 1201 1250 ENSP00000316328/1-1130 EHLQQQDSRI SLR ENSBTAP00000027518/1-1162 EHLQQLDPRI ILR BACU012964/1-108 ---------- --- bmy_06495T0/1-1145 EHLQQLDSRI ILR ENSTTRP00000004460/1-1159 EHLQQLDSRI ILR