KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:05 2014 Check: 00 .. Name: BACU010988/1-147 Len: 388 Check: 2711 Weight: 1.00 Name: ENSP00000233840/1-380 Len: 388 Check: 5125 Weight: 1.00 Name: ENSBTAP00000027552/1-379 Len: 388 Check: 4691 Weight: 1.00 Name: ENSTTRP00000015448/1-368 Len: 388 Check: 3682 Weight: 1.00 Name: bmy_18162T0/1-384 Len: 388 Check: 275 Weight: 1.00 // 1 50 BACU010988/1-147 --MTLD---- --PNPT---- ---------- -----PPPRV QPLSLS---- ENSP00000233840/1-380 --MASL---- --PVLQKESV FQSGAHAYRI PALLYLPGQQ SLLAFAEQRA ENSBTAP00000027552/1-379 --MASC---- --PVLQKERV FQSGAHVYRI PALLYLPQQK TLLAFAEERT ENSTTRP00000015448/1-368 --MASC---- --PILQRERV FQLGAHAYRI PALLYLPQQK TLLAFAEERT bmy_18162T0/1-384 MSQLACEPHG VLPHPAEGES VPVGSPCLQD PRCALPASAE DPAGFAEGRT 51 100 BACU010988/1-147 ---------L AISKLCCSFP -PHLQWHAQE AVAQAQMEGH SSMNPSPLYD ENSP00000233840/1-380 SKKDEHAELI VLRRGDYDAP THQVQWQAQE VVAQARLDGH RSMNPCPLYD ENSBTAP00000027552/1-379 SKKDEHAKLI VLRRGSYSVS TRQVQWHSQE AVSQAQLEGH RSMNPSPLYD ENSTTRP00000015448/1-368 RKKDEHAKLI VLRKGSYNTS THQVRWHAQE EVAQAHMEGH RSMKPSPLYD bmy_18162T0/1-384 SKKNEHAKLI VLRKGSYDVS TPQVRWHAQE AVAQAQMEGH RSVNPSPLYD 101 150 BACU010988/1-147 EKTGTVFLFF IAIPGQVSEH HQPPTRVNVT RLCQVTSTDH GRSWSPVRDL ENSP00000233840/1-380 AQTGTLFLFF IAIPGQVTEQ QQLQTRANVT RLCQVTSTDH GRTWSSPRDL ENSBTAP00000027552/1-379 EATGTVFLFF IAIPGQVSEH HQLQTRVNVT RLCQVTSPDH GKSWSPPTDL ENSTTRP00000015448/1-368 EKTGTVFLFF IAVLGQVSEH HQLHTRVNVT RLCQVTSTDH RRSWSLVRDI bmy_18162T0/1-384 EKTGTIFLFF IAIPGQVSEH HQLHTRVNVT RLCQ---HDH GRSWSPIRDL 151 200 BACU010988/1-147 TDSVTGPAHK DWATFAAGPG PCLQLHSLTQ SLVVPAYA-- ---------- ENSP00000233840/1-380 TDAAIGPAYR EWSTFAVGPG HCLQLHDRAR SLVVPAYAYR KLHPIQRPIP ENSBTAP00000027552/1-379 TDSVIASAHK DWATFAVGPG HCLQLSNLTR TLVVPAYAYC SHCSLKAPSP ENSTTRP00000015448/1-368 TDSVIGPAHK DGATFA---- --LQLHNPTQ S-VLPAYAYC TRPSLQAP-P bmy_18162T0/1-384 TDSVIGPAHK DWAAFAVGPG PCLQLHSPTR SLVVPAYAYC SRPSLQAPTP 201 250 BACU010988/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000233840/1-380 SAFCFLSHDH GRTWARGHFV AQDTLECQVA EVETGEQRVV TLNARSHLRA ENSBTAP00000027552/1-379 SAFCLVSHDH GRSWARGSFV AQGTLECQVA EVRDGQQRVV YLNSRSPLRA ENSTTRP00000015448/1-368 SAFCLVSHNH GNTWARGKLV ARDTLECQAA QVGDAKRRAV YLNARSPLRA bmy_18162T0/1-384 SAFCLVSHDR GNTWARGKFV AGDTLECQVA QVGDAKWRAV YLNARSPLRA 251 300 BACU010988/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000233840/1-380 RVQAQSTNDG LDFQESQLVK KLVEPPPQGC QGSVISFPSP RSGPGSPAQW ENSBTAP00000027552/1-379 RVQAQSANNG LDFKETQQVK KLVE-PPHGC QGSIVSFPSP HAGSEPLDWW ENSTTRP00000015448/1-368 RVQVQSANDG LDFGETQPVQ RLVE-TPHGC QGSIIGFPSP HAGSESPDQ- bmy_18162T0/1-384 RVQVQSTSDG LDFGETQPVQ KLVE-PPHGC QGSIIGFPSP HAGSESPDRW 301 350 BACU010988/1-147 ---------- ---------- ---------- ---------- ---------- ENSP00000233840/1-380 LLYTHPTHSW QRADLGAYLN PRPPAPEAWS EPVLLAKGSC AYSDLQSMGT ENSBTAP00000027552/1-379 LLYTHPTDPQ QRSNLGVYLN RWPPVPTTWS EPTLLAPGSC AYSDLQSMGT ENSTTRP00000015448/1-368 PLYTHPTDPR GRANLGVYLN -QPPAP-AWS EPPLQTPGSC AYSDIQRMGA bmy_18162T0/1-384 LLYTHPTDPR GRANLGMYLN WQPPAPLAWS EPTLLAPGSC AYSDLQRMGA 351 400 BACU010988/1-147 ---------- ---------- ---------- -------- ENSP00000233840/1-380 GPDGSPLFGC LYEANDYEEI VFLMFTLKQA FPAEYLPQ ENSBTAP00000027552/1-379 GPDGSPQFGC LYESDDYKEI VFVMFTLQQA FPAAFLLQ ENSTTRP00000015448/1-368 GPNGSPQFGC LYKSDDYEEI VFVMFTLKQA FPAEFLLQ bmy_18162T0/1-384 GPNGSPRFGC LYESDDYKEI VFVMFTLKQA FPAELLLQ