KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:05 2014 Check: 00 .. Name: ENSP00000361405/1-707 Len: 712 Check: 9133 Weight: 1.00 Name: ENSBTAP00000027556/1-712 Len: 712 Check: 5569 Weight: 1.00 Name: ENSTTRP00000011485/1-670 Len: 712 Check: 2198 Weight: 1.00 Name: bmy_06251T0/1-628 Len: 712 Check: 1159 Weight: 1.00 Name: BACU011371/1-622 Len: 712 Check: 6457 Weight: 1.00 // 1 50 ENSP00000361405/1-707 MSLWQPLVLV LLVLGCCFAA PRQRQSTLVL FPGDLRTNLT DRQLAEEYLY ENSBTAP00000027556/1-712 MSPLQPLVLA LLVLACCSAV PRRRQPTVVV FPGEPRTNLT NRQLAEEYLY ENSTTRP00000011485/1-670 MNPWQPLVLA LLVLGCCSAA PRPHQPTFVV FPGELRSSLT DRQLAEDYLY bmy_06251T0/1-628 MNPWQPLVLA LLVLGCCSAA PRPRQPTFVV FPGELRSNLT DRQLAEEYLY BACU011371/1-622 MNPWQPLVLA LLVLG-CSAA PRPRQPTFVV FPGELQSDLT DRQLAEEYLY 51 100 ENSP00000361405/1-707 RYGYTRVAEM RGESKSLGPA LLLLQKQLSL PETGELDSAT LKAMRTPRCG ENSBTAP00000027556/1-712 RYGYTPGAEL SEDGQSLQRA LLRFQRRLSL PETGELDSTT LNAMRAPRCG ENSTTRP00000011485/1-670 RYGYTNVAEI SKDDQSLRQP LQRLQRRLAL PETGELDSTT LNAMRAPRCG bmy_06251T0/1-628 RYGYTHVAEM NEDDQSLRRP LQRLQQRLAL PETGELDSTT LNAMRAPRCG BACU011371/1-622 RYGYTHVAEI SEDDQSLRRP LQRLQRRLAL PETGELDSTT LNAMRAPRCG 101 150 ENSP00000361405/1-707 VPDLGRFQTF EGDLKWHHHN ITYWIQNYSE DLPRAVIDDA FARAFALWSA ENSBTAP00000027556/1-712 VPDVGRFQTF EGELKWHHHN ITYWIQNYSE DLPRAVIDDA FARAFALWSA ENSTTRP00000011485/1-670 VPDLGRFQTF EGDLKWHHHN ITYWIQNYSE DLPRDVIDDA FARAFALWSA bmy_06251T0/1-628 VPDLGRFQTF EGDLKWHHHN ITYWIQNYSE DLPRSVIDDA FARAFALWSA BACU011371/1-622 VPDLGRFQTF EGDLKWHHHN ITYWIQNYSE DLPRSVIDDA FARAFALWSA 151 200 ENSP00000361405/1-707 VTPLTFTRVY SRDADIVIQF GVAEHGDGYP FDGKDGLLAH AFPPGPGIQG ENSBTAP00000027556/1-712 VTPLTFTRVY GPEADIVIQF GVREHGDGYP FDGKNGLLAH AFPPGKGIQG ENSTTRP00000011485/1-670 VTPLTFTRVY GREADIVIQF GVREHGDGYP FDGKNGLLAH AFPPGPGIQG bmy_06251T0/1-628 VTPLTFTRVY GREADIVIQF GVR------- ---------- ------GIQG BACU011371/1-622 VTPLTFTRVY GREADIVIQF GVREHGDGYP FDGKNGLLAH AFPPGPGIQG 201 250 ENSP00000361405/1-707 DAHFDDDELW SLGKGVVVPT RFGNADGAAC HFPFIFEGRS YSACTTDGRS ENSBTAP00000027556/1-712 DAHFDDEELW SLGKGVVIPT YFGNAKGAAC HFPFTFEGRS YSACTTDGRS ENSTTRP00000011485/1-670 DAHFDDEELW SLGKGVVVPT YFGNAKGAAC HFPFTFEGRS YSACTTDGRS bmy_06251T0/1-628 DAHFDDEELW SLGKGV---- ---------- ---------- ---------- BACU011371/1-622 DAHFDDEELW SLGKGVVVPT YFGNAKGATC HFPFTFEGLS YSACTTDGRS 251 300 ENSP00000361405/1-707 DGLPWCSTTA NYDTDDRFGF CPSERLYTQD GNADGKPCQF PFIFQGQSYS ENSBTAP00000027556/1-712 DDMLWCSTTA DYDADRQFGF CPSERLYTQD GNADGKPCVF PFTFQGRTYS ENSTTRP00000011485/1-670 DDMLWCSTTA DYDTDRQFGF CPSERLYTQD GNADGKPCVF PFTFESRSYS bmy_06251T0/1-628 ---------- ---------- ----GLYTQD GNADGKPCVF PFTFEGRSYS BACU011371/1-622 DDMLWCSTTA DYDTDRQFGF CPSERLYTQD GNADGKPCVF PFTFEGRSYS 301 350 ENSP00000361405/1-707 ACTTDGRSDG YRWCATTANY DRDKLFGFCP TRADSTVMGG NSAGELCVFP ENSBTAP00000027556/1-712 ACTSDGRSDG YRWCATTANY DQDKLYGFCP TRVDATVTGG NAAGELCVFP ENSTTRP00000011485/1-670 ACTTDGRSDG YRWCATTASY DQDKLYGFCP TRADATVTEG NSAGELCVFP bmy_06251T0/1-628 ACTTDGRSDG YRWCATTASY DQDKLYGFCP TRVDATVTEG NSAGELCVFP BACU011371/1-622 ACTTDGRSDG YRWCATTASY DQDKLYGFCP TRVDATVTEG NSAGELCVFP 351 400 ENSP00000361405/1-707 FTFLGKEYST CTSEGRGDGR LWCATTSNFD SDKKWGFCPD QGYSLFLVAA ENSBTAP00000027556/1-712 FTFLGKEYSA CTREGRNDGH LWCATTSNFD KDKKWGFCPD QGYSLFLVAA ENSTTRP00000011485/1-670 FTFLGKEYST CTREGRRDGQ LWCATTSNFD RDKKWGFCPD QGYSLFLVAA bmy_06251T0/1-628 FIFLGEEYSA CTREGRRDGQ LWCATTSNFD RDKKWGFCPD QGYSLFLVAA BACU011371/1-622 FIFLGKEYSA CTREGRRDGQ LWCATTSNFD RDKKWGFCPD QGYSLFLVAA 401 450 ENSP00000361405/1-707 HEFGHALGLD HSSVPEALMY PMYRFTEGPP LHKDDVNGIR HLYGPRPEPE ENSBTAP00000027556/1-712 HEFGHALGLD HTSVPEALMY PMYRFTEEHP LHRDDVQGIQ HLYGPRPEPE ENSTTRP00000011485/1-670 HEFGHALGLD HSSVPEALMY PMYSFTEKHP LHKDDVQGIQ HLYGPRPEPE bmy_06251T0/1-628 HEFGHALGLD HSSVPEALMY PMYSFTEKHP LHKDDVQGIQ HLYGPRPEPE BACU011371/1-622 HEFGHALGLD HSSVPEALMY PMYSFTEKHP LHKDDVQGIQ HLYG------ 451 500 ENSP00000361405/1-707 PRPPTTTT-- ---PQPTAPP TVCPTGPPTV HPSERPTAGP TGPPSAGPTG ENSBTAP00000027556/1-712 PRPPTTTTTT ITEPQPTAPP TVCVTGPPTA RPSEGPTTGP TGPPAAGPTG ENSTTRP00000011485/1-670 PRPPTTAT-- -AEPQPTAPP TVCATGPPTA PPSERPTAGP TGPPSAGPTG bmy_06251T0/1-628 PRPPTTAT-- -AEPQPTAPP TVCATGPPIA PTSERPTAGS TGPPAAGPTG BACU011371/1-622 ---------- ---------- ---------- ---------- --PPSAGPTG 501 550 ENSP00000361405/1-707 PPTAGPSTAT TVPLSPVDDA CNVNIFDAIA EIGNQLYLFK DGKYWRFSEG ENSBTAP00000027556/1-712 PPTAGPSAAP TESPDPAEDV CNVDIFDAIA EIRNRLHFFK AGKYWRLSEG ENSTTRP00000011485/1-670 PPTAGPSAIP TRSLDPADDV CNVNIFDAIA EIGKRLHLFK DGRYWRLSES bmy_06251T0/1-628 PPTAGPSAIP TRSLDPADDV CNVNIFDAIA EIGNRLYLFK DGRYWRLSES BACU011371/1-622 PPTAGPSAIP TRSLDPADDV CNVNIFDAIA EIGNRLYLFK DGRYWRLSES 551 600 ENSP00000361405/1-707 RGSRPQGPFL IADKWPALPR KLDSVFEERL SKKLFFFSGR QVWVYTGASV ENSBTAP00000027556/1-712 GGRRVQGPFL VKSKWPALPR KLDSAFEDPL TKKIFFFSGR QVWVYTGASL ENSTTRP00000011485/1-670 GGRPLQGPFF IKNTWPALPL KLDSAFEDPL TKKIFFFSGR QVWVYTGSSV bmy_06251T0/1-628 GGRRLQGPFL IKNTWPALPR KLDSAFEDPL TKKIFFFSGR QVWVYTGASV BACU011371/1-622 GGRRLQGPFL IKNTWPALPR KLDSAFEDPL TKKIFFFSA- ---------- 601 650 ENSP00000361405/1-707 LGPRRLDKLG LGADVAQVTG ALRSGRGKML LFSGRRLWRF DVKAQMVDPR ENSBTAP00000027556/1-712 LGPRRLDKLG LGPEVAQVTG ALPRPEGKVL LFSGQSFWRF DVKTQKVDPQ ENSTTRP00000011485/1-670 LGPRRLDKLG LGPEVAQVTG ALPRAGGKVL LFSRQSFWRF DVKTQKVDPQ bmy_06251T0/1-628 LGPRRLDKLG LGPEVAQVTG ALPRAGGKVL LFSRQSFWRF DVKTQKVDPR BACU011371/1-622 ---------- -------TVS SLPSC----- --------RF DVKTQKVDPR 651 700 ENSP00000361405/1-707 SASEVDRMFP GVPLDTHDVF QYREKAYFCQ DRFYWRVSSR SELNQVDQVG ENSBTAP00000027556/1-712 SVTPVDQMFP GVPISTHDIF QYQEKAYFCQ DHFYWRVSSQ NEVNQVDYVG ENSTTRP00000011485/1-670 SATPVDQMFP GVPMNTHDIF QYQ------- ---------- ---------- bmy_06251T0/1-628 SATPVDQMFP GVPMSTHDIF QYQEKAYFCQ DRFYWRVSSR NEVNQVDYVG BACU011371/1-622 SATPVDQMFP GVPISTHDIF QYQEKAYFCQ DRFYWRVSSR NEVNQVDYVG 701 750 ENSP00000361405/1-707 YVTYDILQCP ED ENSBTAP00000027556/1-712 YVTFDLLKCP ED ENSTTRP00000011485/1-670 ---------- -- bmy_06251T0/1-628 YVTFDLLQCP ED BACU011371/1-622 YVTFDLLHCP ED