KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:07 2014 Check: 00 .. Name: BACU002973/1-1073 Len: 1290 Check: 1256 Weight: 1.00 Name: ENSTTRP00000010890/1-922 Len: 1290 Check: 612 Weight: 1.00 Name: bmy_12773T0/1-911 Len: 1290 Check: 8518 Weight: 1.00 Name: ENSP00000234488/1-869 Len: 1290 Check: 3242 Weight: 1.00 Name: ENSBTAP00000027587/1-870 Len: 1290 Check: 732 Weight: 1.00 // 1 50 BACU002973/1-1073 MELRPDTSHK ENVPPRPATP LRPGKRLTFL LWSHQKEWAR REKGVQGEAS ENSTTRP00000010890/1-922 ---------- ---------- ---------- ---------- ---------- bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---------- ENSP00000234488/1-869 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027587/1-870 ---------- ---------- ---------- ---------- ---------- 51 100 BACU002973/1-1073 GATLRTQRME RPPQAWCSPA ADAAWLSPLD TQCQRAWLCR CFGAWQRFVQ ENSTTRP00000010890/1-922 ---------- ---------- ---------- ---------- ---------- bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---------- ENSP00000234488/1-869 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027587/1-870 ---------- ---------- ---------- ---------- ---------- 101 150 BACU002973/1-1073 RGTRYRDHMA NRCAGTLRMC LQQWVQMKQL QASDGAQVTP PSLCWQKAGN ENSTTRP00000010890/1-922 ---------- ---------- ---------- ---------- ---------- bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---------- ENSP00000234488/1-869 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027587/1-870 ---------- ---------- ---------- ---------- ---------- 151 200 BACU002973/1-1073 MALLSSAPGG ATAHGLGVVA QALPQEQGQG SLQEAGRRLA LRRALLLWRT ENSTTRP00000010890/1-922 ---------- ---------- ---------- ---------- ---------- bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---------- ENSP00000234488/1-869 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027587/1-870 ---------- ---------- ---------- ---------- ---------- 201 250 BACU002973/1-1073 RLSQRQRADI LLGWSHWATA QGARRELAAC QAWDQSCRAT LGLWRQRLVQ ENSTTRP00000010890/1-922 ---------- ---------- ---------- ---------- ---------- bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---------- ENSP00000234488/1-869 ---------- ---------M AGCRGSLCCC CRWCCCC--- ---------G ENSBTAP00000027587/1-870 ---------- ---------M AGCRGSLCCC CRWCCCC--- ---------G 251 300 BACU002973/1-1073 QQETEQWARE TILGETQEEE DEILPRKDYE SLDYDRCIND PYLEVLETMD ENSTTRP00000010890/1-922 ---------L TILGETQEEE DEILPRKDYE SLDYDRCIND PYLEVLETMD bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---------- ENSP00000234488/1-869 ERETRTPEEL TILGETQEEE DEILPRKDYE SLDYDRCIND PYLEVLETMD ENSBTAP00000027587/1-870 DRETRTPEEL TILGETQEEE DEILPRKDYE SLDYDRCIND PYLEVLETMD 301 350 BACU002973/1-1073 NK-------- ---------- ----VGLFVD FFVRLFTQLK FGVVQA---- ENSTTRP00000010890/1-922 NKKGRRYEAV KWMMVFAIGV CTGLVGLFVD FFVRLFTQLK FGVVQASVEE bmy_12773T0/1-911 ---------- ---------- ---------- ---------- ---MSVAVEE ENSP00000234488/1-869 NKKGRRYEAV KWMVVFAIGV CTGLVGLFVD FFVRLFTQLK FGVVQTSVEE ENSBTAP00000027587/1-870 NKKGRKYEAV KWMMVFAIGV CTGLVGLFVD FFARLFTQLK FGVVQASVEE 351 400 BACU002973/1-1073 -----CILFT GLGVSGRQQL LTLLSCL--- -EPVAAGSGI PEIKCYLNGV ENSTTRP00000010890/1-922 CSQKGCLALS LLELLGFNLT FVFFASLLVL IEPVAAGSGI PEIKCYLNGV bmy_12773T0/1-911 CSQKGCLALS LLELLGFNLT FVFFASLLVL IEPVAAGSGI PEIKCYLNGV ENSP00000234488/1-869 CSQKGCLALS LLELLGFNLT FVFLASLLVL IEPVAAGSGI PEVKCYLNGV ENSBTAP00000027587/1-870 CSQKGCLALS LLELLGFNLT FVFFASLLVL IEPVAAGSGI PEIKCYLNGV 401 450 BACU002973/1-1073 KVPGIVRLRT LLCKVFGVLF SVAGGLFVGK EGPMIHSGAV VGAGLPQFQS ENSTTRP00000010890/1-922 KVPGIVRLRT LLCKVFGVLF SVAGGLFVGK EGPMIHSGAV VGAGLPQFQS bmy_12773T0/1-911 KVPGIVRLRT LLCKVFGVLF SVAGGLFVGK EGPMIHSGAV VGAGLPQFQS ENSP00000234488/1-869 KVPGIVRLRT LLCKVLGVLF SVAGGLFVEK EGPMIHSGSV VGAGLPQFQS ENSBTAP00000027587/1-870 KVPGIVRLRT LLCKVFGVLF SVAGGLFVGK EGPMIHSGAV VGAGLPQFQS 451 500 BACU002973/1-1073 ISLRKIQFNF PYFRSDRDKR DFVSAGAAAG VAAAFGAPIG GTLFSLEEGS ENSTTRP00000010890/1-922 LSLRKIQFNF PYFRSDRDKR DFVSAGAAAG VAAAFGAPIG GTLFSLEEGS bmy_12773T0/1-911 ISLRKIQFNF PYFRSDRDKR DFVSAGAAAG VAAAFGAPIG GTLFSLEEGS ENSP00000234488/1-869 ISLRKIQFNF PYFRSDRDKR DFVSAGAAAG VAAAFGAPIG GTLFSLEEGS ENSBTAP00000027587/1-870 ISLRKIQFNF PYFRSDRDKR DFVSAGAAAG VAAAFGAPIG GTLFSLEEGS 501 550 BACU002973/1-1073 SFWNQGLTWK VLFCSMSATF TLNFFRSGIQ FGSWGSFQLP GLLNFGEFKC ENSTTRP00000010890/1-922 SFWNQGLTWK VLFCSMSATF TLNFFRSGIQ FGSWGSFQLP GLLNFGEFKC bmy_12773T0/1-911 SFWNQGLTWK VLFCSMSATF TLNFFRSGIQ FGSWGSFQLP GLLNFGEFKC ENSP00000234488/1-869 SFWNQGLTWK VLFCSMSATF TLNFFRSGIQ FGSWGSFQLP GLLNFGEFKC ENSBTAP00000027587/1-870 SFWNQGLTWR VLFCSMSATF TLNFFRSGIQ FGSWGSFQLP GLLNFGEFKC 551 600 BACU002973/1-1073 SDSDKKCHLW TAMDLGFFVV MGVVGGLLGA TFNCLNKRLA KYRMRNVHPK ENSTTRP00000010890/1-922 SDSDKKCHLW TAMDLGFFVV MGVVGGLLGA TFNCLNKRLA KYRMRNVHPK bmy_12773T0/1-911 SDSDKKCHLW TAMDLGFFVV MGVVGGLLGA TFNCLNKRLA KYRMRNVHPK ENSP00000234488/1-869 SDSDKKCHLW TAMDLGFFVV MGVIGGLLGA TFNCLNKRLA KYRMRNVHPK ENSBTAP00000027587/1-870 SDSDKKCHLW TAMDLGFFIA MGVIGGLLGA TFNCLNKRLA KYRMRNVHPK 601 650 BACU002973/1-1073 PKLVRVLESL LVSVVTTVVV FVASMVLGEC RQMSSASQVG NDSF--PLQE ENSTTRP00000010890/1-922 PKLVRVLESL LVSLVTTVVV FVASMVLGEC RQMSSASQVG NDSF--ALQ- bmy_12773T0/1-911 PKLVRVLESL LVSVVTTVVV FVASMVLGEC RQMSSASQVG NDSFPLPLQ- ENSP00000234488/1-869 PKLVRVLESL LVSLVTTVVV FVASMVLGEC RQMSSSSQIG NDSF--QLQ- ENSBTAP00000027587/1-870 PKLVRVLESL LVTLVTTVVV FVASMVLGEC RQVTSAAQVG NDSI--PLQ- 651 700 BACU002973/1-1073 YVMFSSTFAR KSQLSEVTSE EVNSSIKTFF CPNETYNDMA TLFFNPQESG ENSTTRP00000010890/1-922 ---------- ------VTSD EVNSSIKTFF CPNETYNDMA TLFFNSQESG bmy_12773T0/1-911 ---------- ------VTSE EVNSSIKTFF CPNETYNDMA TLFFNPQESG ENSP00000234488/1-869 ---------- ------VT-E DVNSSIKTFF CPNDTYNDMA TLFFNPQESA ENSBTAP00000027587/1-870 ---------- ------VTSE DVNSSIKTFF CPNETYNDMA TLFFNPQESA 701 750 BACU002973/1-1073 ILQLFHQDNK ---------- -----IGVSA SGAGGEPVRA QKDLVGANAV ENSTTRP00000010890/1-922 ILQLFHQDST FSPITLALFF VLYFVLACWT YGISVPSGLF VPSLLCGAAF bmy_12773T0/1-911 ILQLFHQDST FSPITLALFF VLYFMLACWT YGISVPSGLF VPSLLCGAAF ENSP00000234488/1-869 ILQLFHQDGT FSPVTLALFF VLYFLLACWT YGISVPSGLF VPSLLCGAAF ENSBTAP00000027587/1-870 ILQLFHQDST FSPVTLALFF VLYFSLACWT YGISVPSGLF VPSLLCGAAF 751 800 BACU002973/1-1073 LWALAGILVG LSYIGLGHIY SGTFALIGAA AFLGGVVRMT ISLTVILIES ENSTTRP00000010890/1-922 GRLVANVLK- -SYIGLGHIY SGTFALIGAA AFLGGVVRMS ISLTVILIES bmy_12773T0/1-911 GRLVANVLK- -SYIGLDHIY SGTFALIGAA AFLGGVVRMT ISLTVILIES ENSP00000234488/1-869 GRLVANVLK- -SYIGLGHIY SGTFALIGAA AFLGGVVRMT ISLTVILIES ENSBTAP00000027587/1-870 GRLVANVLK- -SYIGLGHIY SGTFALIGAA AFLGGVVRMT ISLTVILIES 801 850 BACU002973/1-1073 TNEISYGLPI MITLMVAKWT GDFFNKGIYD IHVGLRGVPL LEWETKVEMD ENSTTRP00000010890/1-922 TSEITYGLPI MVTLMVAKWT GDFFNKGIYD IHVGLRGVPL LEWETEVEMD bmy_12773T0/1-911 TNEISYGLPI MITLMVAKWT GDFFNKGIYD IHVGLRGVPL LEWETEVEMD ENSP00000234488/1-869 TNEITYGLPI MVTLMVAKWT GDFFNKGIYD IHVGLRGVPL LEWETEVEMD ENSBTAP00000027587/1-870 TNEITYGLPI MITLMVAKWT GDFFNKGIYD IHVGLRGVPL LEWETEVEMD 851 900 BACU002973/1-1073 KLRASDIMEP NLTYVYPHTR IQSLVSILRT TVHHAFPVVT ENRGNEKEFM ENSTTRP00000010890/1-922 KLRASDIMEP NLTYVYPHTR IQSLVSILRT TVHHAFPVVT ENRGNEKEFM bmy_12773T0/1-911 KLRANDIMEP NLTYVYPHTR IQSLVSILRT TVHHAFPVVT ENRGNEKEFM ENSP00000234488/1-869 KLRASDIMEP NLTYVYPHTR IQSLVSILRT TVHHAFPVVT ENRGNEKEFM ENSBTAP00000027587/1-870 KLRASDIMEP NLTYVYPHTR IQSLVSILRT TVHHAFPVVT ENRGNEREFM 901 950 BACU002973/1-1073 KGNQLISNNI KYKKCSILTR AGEQRRRSQS MKSYPSSELR NVCDEHVTSE ENSTTRP00000010890/1-922 KGNQLISNNI KYKKCSILTR AGEQRRRSQS MKSYPSSELR NVCDEHVTSE bmy_12773T0/1-911 KGNQLISNNI KYKKCSILTR AGEQRRRSQS MKSYPSSELR NVCDEHVTSE ENSP00000234488/1-869 KGNQLISNNI KFKKSSILTR AGEQRKRSQS MKSYPSSELR NMCDEHIASE ENSBTAP00000027587/1-870 KGNQLISNNI KFKKSSILTR AGEQRRRSQS MKSYPSSELR NMCDEHVTSE 951 1000 BACU002973/1-1073 DPGEKEDLLQ QMLERRYTPY PNLYPDQSPS EDWTMEERFR PLTFHGLILR ENSTTRP00000010890/1-922 DPGEKEDLLQ QMLERRYTPY PNLYPDQSPS EDWTMEERFR PLTFHGLILR bmy_12773T0/1-911 DPGEKEDLLQ QMLERRYTPY PNLYPDQSPS EDWTMEERFR PLTFHGLILR ENSP00000234488/1-869 EPAEKEDLLQ QMLERRYTPY PNLYPDQSPS EDWTMEERFR PLTFHGLILR ENSBTAP00000027587/1-870 EPGEKEDLLQ QMLERRYTPY PNLYPDQSPS EDWTMEERFR PLTFHGLILR 1001 1050 BACU002973/1-1073 SQLVTLLVRG VCYSESQSSA SQPRLSYAEM AEDYPRYPDI HDLDLTLLXX ENSTTRP00000010890/1-922 SQLVTLLVRG VCYSESQSSA SQPRLSYAEM AEDYPRYPDI HDLDLTL--- bmy_12773T0/1-911 SQLVTLLVRG VCYSESQSSA SQPRLSYAEM AEDYPRYPDI HDLDLTL--- ENSP00000234488/1-869 SQLVTLLVRG VCYSESQSSA SQPRLSYAEM AEDYPRYPDI HDLDLTL--- ENSBTAP00000027587/1-870 SQLVTLLVRG VCYSESQSSA SQPRLSYAEM AEDYPRYPDI HDLDLTL--- 1051 1100 BACU002973/1-1073 LNPRMIVDVT PYMNPAPFTV SPNTHVSQVF NLFRTMGLRH LPVVNAVGEI ENSTTRP00000010890/1-922 LNPRMIVDVT PYMNPAPFTV SPNTHVSQVF NLFRTMGLRH LPVVNAVGEV bmy_12773T0/1-911 LNPRMIVDVT PYMNPAPFTV SPNTHVSQVF NLFRTMGLRH LPVVNAVGEI ENSP00000234488/1-869 LNPRMIVDVT PYMNPSPFTV SPNTHVSQVF NLFRTMGLRH LPVVNAVGEI ENSBTAP00000027587/1-870 LNPRMIVDVT PYMNPAPFTV SPNTHVSQVF NLFRTMGLRH LPVVNAVGEI 1101 1150 BACU002973/1-1073 ---------- ----VGVITR HNLTHE---- ---------- ----FLQAR- ENSTTRP00000010890/1-922 SEGTALAASS GRDPLGCCRG GGASHQEQQN PAGRGVRGPA VAS-NLPLC- bmy_12773T0/1-911 ---------- ----VGVITR HNLTHEHGCG STTRAYDGLA RPRRHVPARP ENSP00000234488/1-869 ---------- ----VGIITR HNLTYE---- ---------- ----FLQAR- ENSBTAP00000027587/1-870 ---------- ----VGVITR HNLTHE---- ---------- ----FLQAR- 1151 1200 BACU002973/1-1073 -------LRQ H--------- ---------- ---------- --------YQ ENSTTRP00000010890/1-922 -------LRD A--------- ---------- ----VSCVPA DVASVSLVFP bmy_12773T0/1-911 LREPQLGLRR HGWPGLFLGT EDAQSPARLE SLQSSNALPS ELLGVVSSHQ ENSP00000234488/1-869 -------LRQ H--------- ---------- ---------- --------YQ ENSBTAP00000027587/1-870 -------LRQ H--------- ---------- ---------- --------YQ 1201 1250 BACU002973/1-1073 SL-------- ---------- ---------- ---------- ---------- ENSTTRP00000010890/1-922 LR-------- ---------- PRSAGPCLPE TFLFTLDCSL RRGSV----- bmy_12773T0/1-911 SLDLCELSAS VFPFPAPCAP PSSAGTGPSP SSPLTPGPEG KSGLTHWRGH ENSP00000234488/1-869 TI-------- ---------- ---------- ---------- ---------- ENSBTAP00000027587/1-870 TL-------- ---------- ---------- ---------- ---------- 1251 1300 BACU002973/1-1073 ---------- ---------- ---------- ---------- ENSTTRP00000010890/1-922 ---------P PLYGNLCSK- ---------- ---------- bmy_12773T0/1-911 SEQVPHHLFA PFLGNPAVAL NHHGRDLDRG KHWVECQLQN ENSP00000234488/1-869 ---------- ---------- ---------- ---------- ENSBTAP00000027587/1-870 ---------- ---------- ---------- ----------