KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:08 2014 Check: 00 .. Name: ENSBTAP00000027594/1-871 Len: 875 Check: 1161 Weight: 1.00 Name: bmy_20563T0/1-454 Len: 875 Check: 504 Weight: 1.00 Name: ENSP00000296498/1-875 Len: 875 Check: 3135 Weight: 1.00 Name: BACU004226/1-743 Len: 875 Check: 4633 Weight: 1.00 Name: ENSTTRP00000014365/1-861 Len: 875 Check: 5148 Weight: 1.00 // 1 50 ENSBTAP00000027594/1-871 MTLPHFAVAL ILGALPGVVS FDSVLGYPLH HRHHHAPSRS PQDPYYLTIQ bmy_20563T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000296498/1-875 MTLARFVLAL MLGALPEVVG FDSVLNDSLH HSHRHSPPAG PHYPYYLPTQ BACU004226/1-743 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014365/1-861 MTLARFAVAL IFGALPGVVS FDPVLSYPL- ---------G PQYPYYLPTQ 51 100 ENSBTAP00000027594/1-871 RRPQKT-LPP PLPRTLHPAP ALRASRAHGL R---TPRPPP GDCPAGAPGA bmy_20563T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000296498/1-875 QRPPRTRPPP PLPRFPRPPR ALPAQRPHAL QAGHTPRPHP WGCPAGEPWV BACU004226/1-743 ---------- ---------- ---------- ---------- -DCPAGEPWV ENSTTRP00000014365/1-861 QRPQRT---- PLPRVPRPPA ALRTPRLQAL HARHTPGPRA GDCPAGEPWV 101 150 ENSBTAP00000027594/1-871 NVTDSGAPCL RWADVPPFLA RSPPAGWAQL RGQRHNFCRS PDGAGRPWCF bmy_20563T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000296498/1-875 SVTDFGAPCL RWAEVPPFLE RSPPASWAQL RGQRHNFCRS PDGAGRPWCF BACU004226/1-743 NVTDFGASCL RWAEVPPFLE RSPPAGWAQL RGQRHNFCRS PDGAGRPWCF ENSTTRP00000014365/1-861 NVTDFGASCL RWAEVPPFLE RSPPAGWAQL RGQSHNFCRS PDGTGRPWCF 151 200 ENSBTAP00000027594/1-871 YGDARGKVDW GYCDCRRGSV QLRGGKSAFE GTVEVYENGV WGVVCSSHWD bmy_20563T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000296498/1-875 YGDARGKVDW GYCDCRHGSV RLRGGKNEFE GTVEVYASGV WGTVCSSHWD BACU004226/1-743 YGNAHGKVDW GYCDCRHGSV RLHGGKNAFE GTVEVYAHGV WGTVCSSHWD ENSTTRP00000014365/1-861 YGNAHGKVDW GYCDCRHGSV RLHGGKNEFE GTVEVYANGV WGTVCSSHWD 201 250 ENSBTAP00000027594/1-871 DADASVVCHQ LQLGGKGVAK QTPFSELGLI PVYWSNVRCR GDEENILLCE bmy_20563T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000296498/1-875 DSDASVICHQ LQLGGKGIAK QTPFSGLGLI PIYWSNVRCR GDEENILLCE BACU004226/1-743 DSDASVVCHQ LQLGGKGVAR QTPFSGLGLI PIYWSNVRCR GDEENILLCE ENSTTRP00000014365/1-861 DSDASVVCHQ LQLGGKGVAR QTPFSGLGLI PIYWSNVRCR GDEENILLCE 251 300 ENSBTAP00000027594/1-871 KDIWQGGACS EKMAAAVLCS FSHGPAFPIL RLVGGSSVRE GRVEVYHAGQ bmy_20563T0/1-454 ---------- --MAAAVTCS FSHGPAFPVL RLAGGSSARE GRVELYHAGQ ENSP00000296498/1-875 KDIWQGGVCP QKMAAAVTCS FSHGPTFPII RLAGGSSVHE GRVELYHAGQ BACU004226/1-743 KDIWQGGACP QKMAAAVTCS FSHGPAFPVL RLAGGSSARE GRVELYHAGQ ENSTTRP00000014365/1-861 KDIWQGGTCP QKKAAAVTCS FSHGPAFPVL RLAGGSSARE GRVELYHAGQ 301 350 ENSBTAP00000027594/1-871 WGTVCDDQWD DADAEVVCRQ LGLSGIAKAW NQAYFGEGSG PVMLDEVRCT bmy_20563T0/1-454 WGTVCDDQWD DADAEVVCRQ LGLSGIAKAW NQAYFGEGSG PVMLDEVRCT ENSP00000296498/1-875 WGTVCDDQWD DADAEVICRQ LGLSGIAKAW HQAYFGEGSG PVMLDEVRCT BACU004226/1-743 WGTVCDDQWD DADAEVVCRQ LGLSGIAKAW NQAYFGEGSG PVMLDEVRCT ENSTTRP00000014365/1-861 WGTVCDDQWD DADAEVVCRQ LGLSGIAKAW NQAYFGEGSG PVMLDEVRCT 351 400 ENSBTAP00000027594/1-871 GNELSIEQCP KSSWGEHNCD HKEDAGVSCT PLTDGVIRLA GGKGSHEGRL bmy_20563T0/1-454 GNELSIEQCP KSSWGEHNCG HKEDAGVSCT PLTDGVIRLA GGKGNHEGRL ENSP00000296498/1-875 GNELSIEQCP KSSWGEHNCG HKEDAGVSCT PLTDGVIRLA GGKGSHEGRL BACU004226/1-743 GNELSIEQCP KSSWGEHNCG HKEDAGVSCT PLTDGVIRLA GGKGNHEGRL ENSTTRP00000014365/1-861 GNELSIEQCP KSSWGEHNCG HKEDAGVSCT PLTDGVIRLA GGKGNHEGRL 401 450 ENSBTAP00000027594/1-871 EVYHRGQWGT VCNDGWTDLN TYVVCRQLGF KYGKQASANH FEESMGPIWL bmy_20563T0/1-454 EVYYXGQWGT VCDDGWTELN TYVVCRQLGF KYGKQASANH FEESTGPIWL ENSP00000296498/1-875 EVYYRGQWGT VCDDGWTELN TYVVCRQLGF KYGKQASANH FEESTGPIWL BACU004226/1-743 EVYYRGQWGT VCDDGWTELS TYVVCRQLGF KYGKQASANH FEESTGPIWL ENSTTRP00000014365/1-861 EVYYRGQWGT VCDDGWTELN TYVVCRQLGF KYGKQASANH FEESTGPILL 451 500 ENSBTAP00000027594/1-871 DGVSCSGKEA SFLQCSQRPW GSHDCSHRED VGISCYPGGN GFRLSLGFPI bmy_20563T0/1-454 DDVNCSGKET SFLQCSRRPW GRHDCSHRED VAISCYPGRD GHRLSLGFPI ENSP00000296498/1-875 DDVSCSGKET RFLQCSRRQW GRHDCSHRED VSIACYPGGE GHRLSLGFPV BACU004226/1-743 DDVNCSGKET SFLQCSRRPW GRHDCSHRED VAISCYPGRD GHRLSLGFPI ENSTTRP00000014365/1-861 DDVNCSGKET SFLQCSRRPW ERHDCSHRED VAVSCYPGRD GHRLSLGFPI 501 550 ENSBTAP00000027594/1-871 RLMDGENKKE GRVEVFINGQ WGTVCDDGWT DKDATVICRQ LGYKGPARAR bmy_20563T0/1-454 RLMDGENKKE GRVEVFIHGQ WGTICDDGWT DKDATVICRQ LGYKGPARAR ENSP00000296498/1-875 RLMDGENKKE GRVEVFINGQ WGTICDDGWT DKDAAVICRQ LGYKGPARAR BACU004226/1-743 RLMDGENKKE GRVEVFIHGQ WGTICDDGWT DKDATVICRQ LGYKGPARAR ENSTTRP00000014365/1-861 RLMDGENKKE GRVEVFINGQ WGTICDDGWT DKDATVICRQ LGYKGPARAR 551 600 ENSBTAP00000027594/1-871 SMAYFGEGEG PIHMDNVKCT GNERSLADCV RQNIGDHNCR HSEDAGVICD bmy_20563T0/1-454 TMAYFGEGKG PIHMDNVKCT GNERSLADCI KQDIGRHNCR HGEDAGVICD ENSP00000296498/1-875 TMAYFGEGKG PIHVDNVKCT GNERSLADCI KQDIGRHNCR HSEDAGVICD BACU004226/1-743 TMAYFGEGKG PIHMDNVKCT GNERSLADCI KQDIGKHNCR HGEDAGVICD ENSTTRP00000014365/1-861 TMAYFGEGKG PIHVDNVKCT GNERSLADCI KQDIGRHNCR HGEDAGVICD 601 650 ENSBTAP00000027594/1-871 YLGKKASGNN SKESLSSVCG LRLLPRRQKR IIGGKNSLRG SWPWQVSLRL bmy_20563T0/1-454 YFGKKASGNS NKESLSSVCG LRLLHRRQKR IIGGKNSLRG GWPWQVSLRL ENSP00000296498/1-875 YFGKKASGNS NKESLSSVCG LRLLHRRQKR IIGGKNSLRG GWPWQVSLRL BACU004226/1-743 YFGNKASGNS NKESLSSVCG LRLLHRRQKR IIGGKNSLR- ---------- ENSTTRP00000014365/1-861 YFDKKASGNS NKESLLSVCG LRLLHRRQKR IIGGKNSLRG GWPWQVSLRL 651 700 ENSBTAP00000027594/1-871 KSSHGDGRLL CGATLLSSCW VLTAAHCFKR YGNSTRNYVV RVGDYHTLVP bmy_20563T0/1-454 KSSHGDGRLL CGATLLSSCW VLTAAHCFKR YVSAFPNNSV ---------- ENSP00000296498/1-875 KSSHGDGRLL CGATLLSSCW VLTAAHCFKR YGNSTRSYAV RVGDYHTLVP BACU004226/1-743 ---------- ---------- ---------- YGNSTRNYAV RVGDYHTLVP ENSTTRP00000014365/1-861 KSSHGDGRLL CGATLLSSCW VLTAAHCFKR YGNSTRNYAV RVGDYHTLVP 701 750 ENSBTAP00000027594/1-871 EEFEEEIRVE QIVTHRLYRP HSNDYDIALV RLQGPEEQCA RLSSHVLPAC bmy_20563T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000296498/1-875 EEFEEEIGVQ QIVIHREYRP DRSDYDIALV RLQGPEEQCA RFSSHVLPAC BACU004226/1-743 EEFEEEIGVQ QIVIHREYRP DSSDYDIALV RLQGPEEQCA RFSSHVLPAC ENSTTRP00000014365/1-861 EEFEEEIGVQ QIVIHREYRP DSSDYDIALV RLQGPEEQCA RFSSHVLPAC 751 800 ENSBTAP00000027594/1-871 LPRWRERPQK RAHNCYVTGW GDTGPAYSRT LQQGAIPLLP KRFCEHRYKG bmy_20563T0/1-454 ---------- ---------W ---------- -------LLF ASFSN----- ENSP00000296498/1-875 LPLWRERPQK TASNCYITGW GDTGRAYSRT LQQAAIPLLP KRFCEERYKG BACU004226/1-743 LPLRRERPQK TASNCYITGW GDTGRAYSRT LQQAAIPLLP KRFCEDRYKG ENSTTRP00000014365/1-861 LPLRRERPRK TASNCYITGW GDTGRAYSRT LQQAAIPLLP KRFCEDRYKG 801 850 ENSBTAP00000027594/1-871 RFTRRMLCAG NLHEHKRVDS CQGDSGGPLV CERLGERWVV YGVTSWGYGC bmy_20563T0/1-454 ---------- ---------- -------PFL LYSMLETW-- ---------- ENSP00000296498/1-875 RFTGRMLCAG NLHEHKRVDS CQGDSGGPLM CERPGESWVV YGVTSWGYGC BACU004226/1-743 RFTGRMLCAG NLHEHKRVDS CQGDSGGPLM CERPGESWVV YGVTSWGYGC ENSTTRP00000014365/1-861 RFTGRMLCAG NLHEHKRVDS CQGDSGGPLM CERPGESWVV YGVTSWGYGC 851 900 ENSBTAP00000027594/1-871 GVKDSPGVYT EVSAFVPWIK RVTKL bmy_20563T0/1-454 GVR------- ---------- --ARL ENSP00000296498/1-875 GVKDSPGVYT KVSAFVPWIK SVTKL BACU004226/1-743 GVKDSPGVYT KVSAFVPWIK SVTKL ENSTTRP00000014365/1-861 GVKDSPGVYT KVSAFVPWIK SITKL