KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:33:09 2014 Check: 00 .. Name: ENSP00000381086/1-433 Len: 433 Check: 704 Weight: 1.00 Name: ENSBTAP00000027608/1-433 Len: 433 Check: 1126 Weight: 1.00 Name: bmy_07123T0/1-217 Len: 433 Check: 4740 Weight: 1.00 Name: ENSTTRP00000006398/1-432 Len: 433 Check: 8968 Weight: 1.00 // 1 50 ENSP00000381086/1-433 MEPQLGPEAA ALRPGWLALL LWVSALSCSF SLPASSLSSL VPQVRTSYNF ENSBTAP00000027608/1-433 MEPRLGPKAA ALHLGWPFLL LWVSGLSYSV SSPASPSPSP VSRVRTSYNL bmy_07123T0/1-217 MPPPLA---- ---------- -WQI------ ---------- ---------- ENSTTRP00000006398/1-432 MEPRPGPGDA ALHPGWPALL LWVSGLSYSV SSPASPSPTL VPRVRTSYNF 51 100 ENSP00000381086/1-433 GRTFLGLDKC NACIGTSICK KFFKEEIRSD NWLASHLGLP PDSLLSYPAN ENSBTAP00000027608/1-433 GKTFLGLDKC NACIGTSICK KFFKEEIRFD NGLALHLGPP PDDLPSYSAN bmy_07123T0/1-217 ---FPG---- ---------- --------AE GW-------- --PLPKY--- ENSTTRP00000006398/1-432 GRTFLGLDKC NACIGTSICK KFFKEEIRFD NWLASRLGLI PDDLPSYPVN 101 150 ENSP00000381086/1-433 YSDDSKIWRP VEIFRLVSKY QNEISDRRIC ASASAPKTCS IERVLRKTER ENSBTAP00000027608/1-433 YSDDFKTWRP VEISRLVSKQ QNKISDGRIC ASAAAPKTCS IERVLRKTGR bmy_07123T0/1-217 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006398/1-432 YSDDFKSWRP VEISRLVSKH QNEISDRRIC ASAAA-KTCS IERVLRKTGR 151 200 ENSP00000381086/1-433 FQKWLQAKRL TPDLVQGLAS PLLRCPSQRL LDRVVRRYAE VADAGSIFMD ENSBTAP00000027608/1-433 FQKWLQAKRL TPDLVRGLSS PLLRCPSQRL LDRVVRRYAE VADAGSIFMD bmy_07123T0/1-217 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006398/1-432 FXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 201 250 ENSP00000381086/1-433 HFTDRDKLRL LYTLAVNSHP ILLQIFPGAE GWPLPKYLGS CGRFLVSTST ENSBTAP00000027608/1-433 HFTDRDKLRL LYTLAVNTHP VLLQIFPGAE GWPLPKYLGS CGRFLVSTST bmy_07123T0/1-217 ---------- ---------- ---------- -------LGS CGRFLVSTST ENSTTRP00000006398/1-432 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRFLVSTST 251 300 ENSP00000381086/1-433 RPLQEFYDAP PDQAADLAYQ LLGVLESLRS NDLNYFFYFT HIDAGMFGVF ENSBTAP00000027608/1-433 SPLQEFYGAP PDQAADLAYQ LLGVLESLRS NDLNYFFYFT HVDADMFGIF bmy_07123T0/1-217 SPLQEFYGAP ADQAADLAYQ LLGVLESLRS NDLNYFFYFT HVDVDMFGIF ENSTTRP00000006398/1-432 SPLQEFYGAP ADQAADLAYQ LLGVLESLRS NDLNYFFYFT HVDVDMFGIF 301 350 ENSP00000381086/1-433 NNGHLFIRDA SAVGVIDKQE GSQEANRAGE NKDIFSCLVS GCQAQLPSCE ENSBTAP00000027608/1-433 NNGHLFIRDA SALGVIDRQE GSQAASGAGD NKDIFSCLVS GCQTKLPSCD bmy_07123T0/1-217 NNGHLFIRDA SALGVIDRQE GSQAASRAGE NKDIFSCLVS GCQTELPSCD ENSTTRP00000006398/1-432 NNGHLFIRDA SALGVIDRQE GSQAASRAGE NKDIFSCLVS GCQTELPSCD 351 400 ENSP00000381086/1-433 SISEKQSLVL VCQKLLPRLL QGRFPSPVQD DIDSILVQCG DSIRPDPEVL ENSBTAP00000027608/1-433 TIPEKQNLVL VCSQVLPLLL QAKFPSPVQE EIDAELTRCA DGTRPDPEVL bmy_07123T0/1-217 TIPEKQSLVL VCGQVLPPLL QAKFPSPVQE EIDAELARCG EATRPDPEVF ENSTTRP00000006398/1-432 TIPEKQSLVL VCGQVLPPLL QAKFPSPVQE EIDAELARCG EGTRPDPEVL 401 450 ENSP00000381086/1-433 GAASQLKDIL RPLRTCDSRF AYRYPDCKYN DKF ENSBTAP00000027608/1-433 GAASRLKDIL RPLRTCDPRF AYRYPDCKYD DKF bmy_07123T0/1-217 QAASRLKDIL RPLRTCDPRF AYRYPDCKYN DKF ENSTTRP00000006398/1-432 QAASRLKDIL RPLRTCDPRF AYRYPDCKYN DKF