KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:10 2014 Check: 00 .. Name: ENSTTRP00000015837/1-650 Len: 1668 Check: 7652 Weight: 1.00 Name: bmy_06463T0/1-664 Len: 1668 Check: 937 Weight: 1.00 Name: BACU007756/1-1668 Len: 1668 Check: 7243 Weight: 1.00 Name: ENSP00000328478/1-664 Len: 1668 Check: 2379 Weight: 1.00 Name: ENSBTAP00000027618/1-663 Len: 1668 Check: 46 Weight: 1.00 // 1 50 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 SLDGFMIILS TDGVIIFVAD NISSLLGHLP DDIMGKKLLS LLPAKEKNEV ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 YQKIALKVPL PNSVGKHIDF CCHLKRGDAE HGSSPAYEYV KFILSIKDIS ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 NEPLVLFRSF FPSRSCESSA TDLSLENRFF LVGTVCIFRV QTLRGLFSVK ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 ESNEDVLLVP DSDEERLPVA HRSVQGQRRR SRMELLHAEP DAPASEGQVD ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 IITADQYGRH KSVRAIKRKS VTSYDSTSTL ETIPELPATS SLQSFELEPE ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 VGHVEQMDQM GEMEQSLHPP PSITWYINRW ETELMKKFQK QQEKMMQMLQ ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 GEIRNQSHTL EMLKEQLQAM QDSKFQVKGQ FYMQPSTSCH IHSPEPQSLE ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 PVPKKQLIEP MNRSFPDVRE AKRFCGPYSS QSFQFPEELE EPCGASSQQP ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 AQEQSQQHNV TVENPVLQIL LPSQPGLSLP LSDNTHMFML TQPTTARVQL ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 VAEQQLSGDD HGESLGGQEH RSHSFLPEDQ QGPCLGPVDL AQTPSSEMIS ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 STIIPQYQIN SDSNIVTLQV PEDYIQLWQQ PEDPERHLYL QVNTWPSSEQ ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 ATLQDQVTWV QVPPFAAIGK KQLQAQSLVR VPPWTQHSTG QGPPWCLECP ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 KYFEGPEDSI LSHFCASRVS QAHFFHYFAA APRGRQDAPH FPDLTREKTA ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 VLGQGRGEVS DEAKVTQSLA ERGLDPALLL QARWHPDEEG PGCGPPPLFS ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 RLVVGGGPAG MTDLGVTLSS VFLEAKNAHS VLKRFPRANE FLEELRQGTI ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 ERECMEEICS YEEMEFWKGY PNAVYSVRDP AQSSDAMYVV VPLLGVALLI ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 VIALFIIWRC QLQKATRHHP SYAQNRYLAS RAGHSLPRVM VYRGTVHSQG ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 ETSGHRETGS PPQVVLGPSR GGRTTVRLES ALYRPELSLS IQCHPSAVLR ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ---------- ---------- bmy_06463T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU007756/1-1668 GGDRSPGEQR NPEADMVAEI GLEELNGLEM EVMRRQISFV QNIVVKHLSH ENSP00000328478/1-664 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027618/1-663 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000015837/1-650 ---------- ---------- ---------- ------MTEK ANGVKSSLAN bmy_06463T0/1-664 ---------- ---------- ---------- ------MTEK ASGVKSSPAN BACU007756/1-1668 GGAGLEPDLK VADDSQRRIG IKEPRLPSEG PGCTWRMTEK ASGVKSSPAN ENSP00000328478/1-664 ---------- ---------- ---------- ------MTEK TNGVKSSPAN ENSBTAP00000027618/1-663 ---------- ---------- ---------- ------MTEK ANGVKSSPAN 1001 1050 ENSTTRP00000015837/1-650 NHSHHAPPAI KVNGEDDHRT SNRPQSAADD DTSSQLQRL- ------QRRG bmy_06463T0/1-664 NHSHHAPPAI KVSGEDDHRT SNRPQSAADD DTSSELQRLA EMDAPLQRRG BACU007756/1-1668 NHSHHAPPAI KVSGEDDHTT SNRPQSAADD DTSSELQRLA AMDAPLQRRG ENSP00000328478/1-664 NHNHHAPPAI KANGKDDHRT SSRPHSAADD DTSSELQRLA DVDAPQQGRS ENSBTAP00000027618/1-663 NHNHHAPPAI KASGKDDHRA SSRPQSAADD DTSSELQRLA EMDAPQQRRG 1051 1100 ENSTTRP00000015837/1-650 GFCRIACLMG VIREWANKNF HEEEPRPDSF LERFCGPELQ TVTTQQGDGK bmy_06463T0/1-664 GFHRIACLVG VIREWANKNF REEEPRPDSF LERFCGPELQ TVMTQQGDGK BACU007756/1-1668 GFRRIACLVG VIREWANKNF REEEPRPDSF LERFCGPELQ TVTTQQGDGK ENSP00000328478/1-664 GFRRIVRLVG IIREWANKNF REEEPRPDSF LERFRGPELQ TVTTQEGDGK ENSBTAP00000027618/1-663 GFRRIARLVG VLREWAYRNF REEEPRPDSF LERFRGPELH TVTTQQGDGK 1101 1150 ENSTTRP00000015837/1-650 GDKDSEGKGS KKKC------ ---------- --ELFVLDPA GDWYYR-LFV bmy_06463T0/1-664 GDKDSEGKGT KKKC------ ---------- --ELFVLDPA GDWYYRWLFV BACU007756/1-1668 GDKDSEGKGT KYSCPACGTG RALEHVIGGK KWELFVLDPA GDWYYRWLFV ENSP00000328478/1-664 GDKDGEDKGT KKKF------ ---------- --ELFVLDPA GDWYYCWLFV ENSBTAP00000027618/1-663 GDKDGEGKGT KKKF------ ---------- --ELFVLDPA GDWYYRWLFL 1151 1200 ENSTTRP00000015837/1-650 IAMPVLYSWC LLVARAC--D LQKDYCIVWL VLDYFSDVVY IADLFIRLRT bmy_06463T0/1-664 IAMPVFYNWC LLVARACFSD LQKDYYVVWL VLDYFSDVVY IADLFIXLRT BACU007756/1-1668 IAMPVFYNWC LLVARACFSD LQKDYYVVWL VLDYFSDVVY IADLFIRLRT ENSP00000328478/1-664 IAMPVLYNWC LLVARACFSD LQKGYYLVWL VLDYVSDVVY IADLFIRLRT ENSBTAP00000027618/1-663 IALPVLYNWC LLVARACFSD LQKGYYIVWL VLDYVSDVVY IADLFIRLRT 1201 1250 ENSTTRP00000015837/1-650 GFLEQGLLVK DTKMLRDNYI HTLQFKLDVA SIIPTDLIYF PVGIHRPELR bmy_06463T0/1-664 GFLEEGLLVK DNKKLRDNYI HTLQFKLDVA SIIPTDLIYF AVGIHIPELR BACU007756/1-1668 GFLEQGLLVK DNKKLRDNYI HTLQFKLDVA SIIPTDLIYF AVGIHNPELR ENSP00000328478/1-664 GFLEQGLLVK DTKKLRDNYI HTLQFKLDVA SIIPTDLIYF AVDIHSPEVR ENSBTAP00000027618/1-663 GFLEQGLLVK DTKKLRDNYI HTMQFKLDVA SIIPTDLIYF AVGIHNPEVR 1251 1300 ENSTTRP00000015837/1-650 FNRLLHFARM FEFFDRTETR TSHHNIFHIS NLVLYILVII CWNACIYYAI bmy_06463T0/1-664 FNRLLHFARM FEFFDRTETR TSYPNIFRIS NLVLYILVII HWNACIYYAI BACU007756/1-1668 FNRLLHFARM FEFFDRTETR TSYPNIFRIS NLVLYILVII HWNACIYYAI ENSP00000328478/1-664 FNRLLHFARM FEFFDRTETR TNYPNIFRIS NLVLYILVII HWNACIYYAI ENSBTAP00000027618/1-663 FNRLLHFARM FEFFDRTETR TSYPNIFRIS NLILYILIII HWNACIYYAI 1301 1350 ENSTTRP00000015837/1-650 SKSIGFGVDT WVYSNIIDPE YGYLSRECIY CLYWSTLTLT TIGVTPPPVK bmy_06463T0/1-664 SKSIGFGVDT WVYPNITDPE YGYLSREYIY CLYWSTLTLT TIGETPPPVK BACU007756/1-1668 SKSIGFGVDT WVYPNITDPE YGYLSREYIY CLYWSTLTLT TIGETPPPVK ENSP00000328478/1-664 SKSIGFGVDT WVYPNITDPE YGYLAREYIY CLYWSTLTLT TIGETPPPVK ENSBTAP00000027618/1-663 SKSIGFGVDT WVYPNITDPE YGYLSREYIY CLYWSTLTLT TIGETPPPVK 1351 1400 ENSTTRP00000015837/1-650 DEEYLFVIFD FPIGVLIFAT IVGNVGSMIS NMNATRAEFQ AKIDAVKHYM bmy_06463T0/1-664 DEEYLFVIFD FLIGVLIFAT IVGNVGSMIS NMNATRAEFQ AKIDAVKHYM BACU007756/1-1668 DEEYLFVIFD FLIGVLIFAT IVGNVGSMIS NMNATRAEFQ AKIDAVKHYM ENSP00000328478/1-664 DEEYLFVIFD FLIGVLIFAT IVGNVGSMIS NMNATRAEFQ AKIDAVKHYM ENSBTAP00000027618/1-663 DEEYLFVIFD FLIGVLIFAT IVGNVGSMIS NMNATRAEFQ AKIDAVKHYM 1401 1450 ENSTTRP00000015837/1-650 QFQKVSKEME AKVIRWFDYL WTNKKSVDEW EVLKKLPSKL RAEIAINVHL bmy_06463T0/1-664 QFRKVSKEME AKVIRWFDYL WTNKKSVDER EVLKKLPAKL RAEIAINVHL BACU007756/1-1668 QFRKVSKEME AKVIRWFDYL WTNKKSVDER EVLKKLPAKL RAEIAINVHL ENSP00000328478/1-664 QFRKVSKGME AKVIRWFDYL WTNKKTVDER EILKNLPAKL RAEIAINVHL ENSBTAP00000027618/1-663 QFRKVSKEME AKVIRWFDYL WTNKKSVDER EVLKNLPAKL RAEIAINVHL 1451 1500 ENSTTRP00000015837/1-650 FTLKKVCIFQ DCEAGLLVEL VLKLHPQVFS PGDY----GG IGKEMYIIKE bmy_06463T0/1-664 STLKKVXIFQ DCEAGLLVEL VLKLRPQVFS PGDYICRKGD IGKEMYIIKE BACU007756/1-1668 STLKKVRIFQ NCEAGLLVEL VLKLRPQVFG PGDYICRKGD IGKEMYIIKE ENSP00000328478/1-664 STLKKVRIFH DCEAGLLVEL VLKLRPQVFS PGDYICRKGD IGKEMYIIKE ENSBTAP00000027618/1-663 STLKKVRIFQ DCEAGLLVEL VLKLRPQVFS PGDYICRKGD IGKEMYIIKE 1501 1550 ENSTTRP00000015837/1-650 GKLAVVADDG VTQYALLLAG SCFGEISTLN IKGSKTGNRR TANIRSLGYS bmy_06463T0/1-664 GKLAVVADDG VTQHALLSAG SCFGEISILN IKGSKMGNRR TANIRSLGYS BACU007756/1-1668 GKLAVVADDG VTQHALLSAG SCFGEISILN IKGSKMGNRR TANIRSLGYS ENSP00000328478/1-664 GKLAVVADDG VTQYALLSAG SCFGEISILN IKGSKMGNRR TANIRSLGYS ENSBTAP00000027618/1-663 GKLAVVADDG VTQYALLSAG SCFGEISILN IKGSKMGNRR TANIRSLGYS 1551 1600 ENSTTRP00000015837/1-650 DLFCLSKDDL MEAVTEYPDA KRVLEERGRE ILMKEGLLDE NEVAASIEAD bmy_06463T0/1-664 DLFCLSKDDL MEAVTEYPEA KRVLEERGRE ILMKEGLLDE NEVAASIEVD BACU007756/1-1668 DLFCLSKDDL MEAVTEYPEA KRVLEERGRE ILMKEGLLDE NEVAASIEVD ENSP00000328478/1-664 DLFCLSKDDL MEAVTEYPDA KKVLEERGRE ILMKEGLLDE NEVATSMEVD ENSBTAP00000027618/1-663 DLFCLSKDDL MEAVTEYPDA KRVLEERGRE ILMKEGLLDE NEVAASMEVD 1601 1650 ENSTTRP00000015837/1-650 VQKKLEQLET NMETLYTRFP CLLAEYPGAQ QKLRQRIMVL ETKMKQNNED bmy_06463T0/1-664 VQEKLEQLET NMETLYTRFA CLLAEYTGAQ QKLKQRIMVL ETKMKQNNED BACU007756/1-1668 VQEKLEQLET NMETLYTRFA CLLAEYTGAQ QKLKQRIVVL ETKMKQNNED ENSP00000328478/1-664 VQEKLGQLET NMETLYTRFG RLLAEYTGAQ QKLKQRITVL ETKMKQNNED ENSBTAP00000027618/1-663 VQEKLEQLET NMDTLYTRFA RLLAEYTGAQ QKLKQRITVL ETKMKQNNED 1651 1700 ENSTTRP00000015837/1-650 DYLSDGMNSP KPAAAEKP bmy_06463T0/1-664 DYLSDGMNSP KPAAAEKP BACU007756/1-1668 DYLSDGMNSP KPAAAEKP ENSP00000328478/1-664 DYLSDGMNSP ELAAADEP ENSBTAP00000027618/1-663 DSLSDGMNSP EP-PAEKP