KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:33:12 2014 Check: 00 .. Name: ENSTTRP00000005200/1-365 Len: 373 Check: 8540 Weight: 1.00 Name: ENSP00000216500/1-339 Len: 373 Check: 9085 Weight: 1.00 Name: bmy_04200T0/1-353 Len: 373 Check: 7895 Weight: 1.00 Name: ENSBTAP00000027623/1-339 Len: 373 Check: 7636 Weight: 1.00 // 1 50 ENSTTRP00000005200/1-365 MSWNLLLWLL ALCALLALVV QLLRF-RADG D---LLAEWQ RRRPXXXXXX ENSP00000216500/1-339 MNWELLLWLL VLCALLLLLV QLLRFLRADG DLTLLWAEWQ GRRPEWELTD bmy_04200T0/1-353 MSWDLLLWLL ALCALLALVV QLLCFLRADG DLTLLWAEWQ GRRPEWELTD ENSBTAP00000027623/1-339 MSWELLLWLL ALCALLALVV QLLRFLRADA DLTLLWAEWQ GRRPEWELTD 51 100 ENSTTRP00000005200/1-365 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNGNL ENSP00000216500/1-339 MVVWVTGASS GIGEELAYQL SKLGVSLVLS ARRVHELERV KRRCLENGNL bmy_04200T0/1-353 MVVWVTGASS GIGEELAYQL SKLGVSLVLS ARRVHELERV KRRCLENGNL ENSBTAP00000027623/1-339 MVVWVTGASS GIGEELAYQL SKLGVSLVLS ARRMHELERV KRKCLENGNL 101 150 ENSTTRP00000005200/1-365 KGKDILILPL DLTNRSSHEM ATKAVLQEFG KIDILVNNGG VSQRSLCVDT ENSP00000216500/1-339 KEKDILVLPL DLTDTGSHEA ATKAVLQEFG RIDILVNNGG MSQRSLCMDT bmy_04200T0/1-353 KGKDILILPL DLTNRSSHEM ATKAVLQEFG KIDILVNNGG VSQRSLCVDT ENSBTAP00000027623/1-339 KEKDILILPL DLTDRSSHEM ATKAVLQEFG RIDILVNNGG VSQRALCVDT 151 200 ENSTTRP00000005200/1-365 SLDVYKELIE VNYLGTVSLT KCVLPHMIER KQGKIVTVTS LLGVISAPLS ENSP00000216500/1-339 SLDVYRKLIE LNYLGTVSLT KCVLPHMIER KQGKIVTVNS ILGIISVPLS bmy_04200T0/1-353 SLDVYKELIE VNYLGTVSLT KCVLPHMIER KQGKIVTVTS LLGVVCAPLS ENSBTAP00000027623/1-339 SLDVFKELIE LNYLGTVSLT KCVLPHMIER KQGKIVTVNS MVGIIAAPLS 201 250 ENSTTRP00000005200/1-365 AGYCASKHAL QGFFNTLRIE LATYPGIIVS NICPGPVQSN IVKNALTEKV ENSP00000216500/1-339 IGYCASKHAL RGFFNGLRTE LATYPGIIVS NICPGPVQSN IVENSLAGEV bmy_04200T0/1-353 AGYCASKHAL QGFFNTLRIE LGTYPGIIVS NICPGPVQSN IVKNALTEEV ENSBTAP00000027623/1-339 TGYCASKHAL RGFFNTLRSE LATYPGITIS NICPGPVQSN IVKNALTEEV 251 300 ENSTTRP00000005200/1-365 TKTTGSNADQ SHKMAASRCV QLMLISMAND LKEVWIADQP FLLMAYLWQY ENSP00000216500/1-339 TKTIGNNGDQ SHKMTTSRCV RLMLISMAND LKEVWISEQP FLLVTYLWQY bmy_04200T0/1-353 TKTTGSDADQ SHKMAVSRCV QLMLISMAND LKEVWIADQP FLLMAYLWQY ENSBTAP00000027623/1-339 TKPTGSTADQ SYKMATSRCV RLMLVAMAND LKEVWISDQP FLLMIYLWQY 301 350 ENSTTRP00000005200/1-365 MPTWAWWITN --GRKGLRTL RMVWMQIPLI LKSGRQNISE STCIFQANGK ENSP00000216500/1-339 MPTWAWWITN KMGKKRIENF ---------- ----KSGVDA DSSYFKIFK- bmy_04200T0/1-353 MPTWAWWITN KLGKKRIENF ---------- ----KNGV-- ----FKHLKT ENSBTAP00000027623/1-339 MPTLAWWLTN KAAKRRIENF ---------- ----KSGVDA DSSYFRSVK- 351 400 ENSTTRP00000005200/1-365 RNGKHNNSNF LMHRLICDFT S-- ENSP00000216500/1-339 ---------- ---------T KHD bmy_04200T0/1-353 LITGSPTGSV ILPKQYIQLK RNA ENSBTAP00000027623/1-339 ---------- ---------K KHD