KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:33:12 2014  Check: 00 ..

 Name: bmy_09872T0/1-201         Len:    237  Check:  5934  Weight:  1.00
 Name: ENSTTRP00000004863/1-203  Len:    237  Check:  1470  Weight:  1.00
 Name: ENSP00000454746/1-237     Len:    237  Check:  515  Weight:  1.00
 Name: ENSBTAP00000027628/1-144  Len:    237  Check:  8917  Weight:  1.00

//


                          1                                                   50
bmy_09872T0/1-201         MAEGDNRTTN LLAAGTASLE EQLQGWGEVM LMADKVLRWE RAWFPPAIMG 
ENSTTRP00000004863/1-203  MAEGDNRSTN VLAAETANLE EQLQGWGEVM LMADKVLRWE RAWFPPAIMG 
ENSP00000454746/1-237     MAEGDNRSTN LLAAETASLE EQLQGWGEVM LMADKVLRWE RAWFPPAIMG 
ENSBTAP00000027628/1-144  MAEGDNRSTN LLAAETASLE EQLQGWGEVM LMADKVLRWE RAWFPPAIMG 


                          51                                                 100
bmy_09872T0/1-201         VVSLEFLTIY YLDSSVLSGV SCFVMFLCLA DYLVPILAPR IFGSNKWTTE 
ENSTTRP00000004863/1-203  VVSLVFLTIY YLDPSVLSGV SCFVMFLCLA DYLVPILAPR IFGSNKWTTE 
ENSP00000454746/1-237     VVSLVFLIIY YLDPSVLSGV SCFVMFLCLA DYLVPILAPR IFGSNKWTTE 
ENSBTAP00000027628/1-144  VVSLVFLTIY YLDPSVLSGV SCFVMFLCLA DYLVPILAPR IFGSNKWTTE 


                          101                                                150
bmy_09872T0/1-201         QQQRFHGICS NLVKTRRRAV GWWKRLVMLK EEKPKMYFMT MIISLAAVAW 
ENSTTRP00000004863/1-203  QQQRFHEICS NLVKTRRRAV GWWKRLFTLK EEKPKMYFMT MIISLAAVAW 
ENSP00000454746/1-237     QQQRFHEICS NLVKTRRRAV GWWKRLFTLK EEKPKMYFMT MIVSLAAVAW 
ENSBTAP00000027628/1-144  QQQRFHEICS NLVKTRRRAV GWWKRLFTLK EEKPKMVLF- ---------W 


                          151                                                200
bmy_09872T0/1-201         VGQQVHNLLL THLRVTFLLL ---------- ---------- ---------- 
ENSTTRP00000004863/1-203  VGQQVHNLLL TYLIVTFLLL ---------- ---------- ---------- 
ENSP00000454746/1-237     VGQQVHNLLL TYLIATMVRM NVLADALKSI NNAEKRGKRQ VLIRPCSKVI 
ENSBTAP00000027628/1-144  ---------- ------FCII ---------- ---------- ---------- 


                          201                                                250
bmy_09872T0/1-201         ---LPGLNQH GIILKH-IGM AKREKQ--AS QTKRKEK 
ENSTTRP00000004863/1-203  ---LPGLNQH GIISKY-IGM AKREINKLLK QKEKKNE 
ENSP00000454746/1-237     VRFLTVMMKH GYIGEFEIID DHRAGKIVVN LTGRLNK 
ENSBTAP00000027628/1-144  ---------- ---------- ---------- -------