KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:33:22 2014 Check: 00 .. Name: ENSP00000345785/1-591 Len: 591 Check: 2884 Weight: 1.00 Name: ENSBTAP00000027639/1-589 Len: 591 Check: 9526 Weight: 1.00 Name: bmy_00362T0/1-590 Len: 591 Check: 1940 Weight: 1.00 Name: BACU012028/1-357 Len: 591 Check: 9537 Weight: 1.00 // 1 50 ENSP00000345785/1-591 MAVAPLRGAL LLWQLLAAGG AALEIGRFDP ERGRGAAPCQ AVEIPMCRGI ENSBTAP00000027639/1-589 MAVPPLRRAL LLWQLLAAGG AALEIGRFDP ERGRGPAPCQ VVEIPMCRGI bmy_00362T0/1-590 MAVPPLRRAL LLWQLLAAGG AALEIGRFDP ERGRGPAPCQ AVEIPMCRGI BACU012028/1-357 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000345785/1-591 GYNLTRMPNL LGHTSQGEAA AELAEFAPLV QYGCHSHLRF FLCSLYAPMC ENSBTAP00000027639/1-589 GYNLTRMPNL LGHTSQGEAA AELAEFAPLV QYGCHSHLRF FLCSLYAPMC bmy_00362T0/1-590 GYNLTRMPNL LGHTSQGEAA AELAEFAPLV QYGCHSHLRF FLCSLYAPMC BACU012028/1-357 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000345785/1-591 TDQVSTPIPA CRPMCEQARL RCAPIMEQFN FGWPDSLDCA RLPTRNDPHA ENSBTAP00000027639/1-589 TDQVSTPIPA CRPMCEQARL RCAPIMEQFN FGWPDSLDCA RLPTRNDPHA bmy_00362T0/1-590 TDQVSTPIPA CRPMCEQARL RCAPIMEQFN FGWPDSLDCA RLPTRNDPHA BACU012028/1-357 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000345785/1-591 LCMEAPENAT AGPAEPHKGL GMLPVAPRPA RPPGDLGPGA GGSGTCENPE ENSBTAP00000027639/1-589 LCMEAPENAT AGPTEPHKGL GMLPVAPRPA RPAEDALQGA G--GTCENPE bmy_00362T0/1-590 LCMEAPENAT AGPAEPHKGL GMLPVAPRPA RPPGDAALGA AG-GTCENPE BACU012028/1-357 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000345785/1-591 KFQYVEKSRS CAPRCGPGVE VFWSRRDKDF ALVWMAVWSA LCFFSTAFTV ENSBTAP00000027639/1-589 KFQYVEKSRS CAPRCGPGVE VFWSRRDKDF ALVWMAVWSA LCFFSTAFTV bmy_00362T0/1-590 KFQYVEKSRS CAPRCGPGVE VFWSRRDKDF ALVWMAVWSA LCFFSTAFTV BACU012028/1-357 ---------- ---------- ---------- ----MAVWSA LCFFSTAFTV 251 300 ENSP00000345785/1-591 LTFLLEPHRF QYPERPIIFL SMCYNVYSLA FLIRAVAGAQ SVACDQEAGA ENSBTAP00000027639/1-589 LTFLLEPHRF QYPERPIIFL SMCYNVYSLA FLIRAVAGAQ SVACDQEAGA bmy_00362T0/1-590 LTFLLEPHRF QYPERPIIFL SMCYNVYSLA FLIRAVAGAQ SVACDQEAGA BACU012028/1-357 LTFLLEPHRF QYPERPIIFL SMCYNVYSLA FLIRAVAGAQ SVACDQEAGA 301 350 ENSP00000345785/1-591 LYVIQEGLEN TGCTLVFLLL YYFGMASSLW WVVLTLTWFL AAGKKWGHEA ENSBTAP00000027639/1-589 LYVIQEGLEN TGCTLVFLLL YYFGMASSLW WVVLTLTWFL AAGKKWGHEA bmy_00362T0/1-590 LYVIQEGLEN TGCTLVFLLL YYFGMASSLW WVVLTLTWFL AAGKKWGHEA BACU012028/1-357 LYVIQEGLEN TGCSLLFLLL YYFGMASSLW WVVLTLTWFL AAGKKWGHEA 351 400 ENSP00000345785/1-591 IEAHGSYFHM AAWGLPALKT IVILTLRKVA GDELTGLCYV ASTDAAALTG ENSBTAP00000027639/1-589 IEAHGSYFHM AAWGLPALKT IVILTLRKVA GDELTGLCYV ANMDAAALTG bmy_00362T0/1-590 IEAHGGYFHM AAWGLPALKT IVILTLRKVA GDELTGLCYV ASMDAGALTG BACU012028/1-357 IEAHGSYFHM AAWGLPALKT IVILTLRKVA GDELTGLCYV ASMDAGALTG 401 450 ENSP00000345785/1-591 FVLVPLSGYL VLGSSFLLTG FVALFHIRKI MKTGGTNTEK LEKLMVKIGV ENSBTAP00000027639/1-589 FVLVPLSCYL VLGTSFLLTG FVALFHIRKI MKTGGTNTEK LEKLMVKIGV bmy_00362T0/1-590 FVLVPLSCYL VLGTSFLLTG FVALFHIRKI MKTGGTNTEK LEKLMVKIGV BACU012028/1-357 FVLVPLSCYL VLGTSFLLTG FVALFHIRKI MKTGGTNTEK LEKLMVKIGV 451 500 ENSP00000345785/1-591 FSILYTVPAT CVIVCYVYER LNMDFWRLRA TEQPCAAAAG PGGRRDCSLP ENSBTAP00000027639/1-589 FSILYTVPAT CVIVCYVYER LNMDFWRLRA TEQACSAATT PGGRRDCSLQ bmy_00362T0/1-590 FSILYTVPAT CVIVCYVYER LNMDFWRLRA TEQPCSAATT PGGWRDCSLQ BACU012028/1-357 FSILYTVPAT CVIVCYVYER LNMDFWRLRA TEQPCSAATT PGGWRDCSLQ 501 550 ENSP00000345785/1-591 GGSVPTVAVF MLKIFMSLVV GITSGVWVWS SKTFQTWQSL CYRKIAAGRA ENSBTAP00000027639/1-589 GGSVPTVAVF MLKIFMSLVV GITSGVWVWS SKTFQTWQSL CHRKMAAGRA bmy_00362T0/1-590 GGSVPTVAVF MLKIFMSLVV GITSGVWVWS SKTFQTWQSL CHRKMAAGRA BACU012028/1-357 GGSVPTVAVF MLKIFMSLVV GITSGVWVWS SKTFQTWQSL CHRKMAGGRA 551 600 ENSP00000345785/1-591 RAKACRAPGS YGRGTHCHYK APTVVLHMTK TDPSLENPTH L ENSBTAP00000027639/1-589 RAKACRAPGG YGRGTHGHYK APTVVLHMTK TDPSLENPTH L bmy_00362T0/1-590 RAKTCRAPGG YGRGTHCHYK APTVVLHMTK TDPSLENPTH L BACU012028/1-357 RAKTCRAPGG YGRGTHCHYK APTVVLHMTK TDPSLENPTH L