KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:27 2014 Check: 00 .. Name: ENSP00000431512/1-529 Len: 664 Check: 3749 Weight: 1.00 Name: ENSBTAP00000027654/1-525 Len: 664 Check: 5979 Weight: 1.00 Name: bmy_07571T0/1-611 Len: 664 Check: 6860 Weight: 1.00 Name: BACU001458/1-535 Len: 664 Check: 298 Weight: 1.00 Name: ENSTTRP00000006082/1-476 Len: 664 Check: 3574 Weight: 1.00 // 1 50 ENSP00000431512/1-529 ----MDLPVG PGAAGPSNVP AFLTKLWTLV SDPDTDALIC WSP------- ENSBTAP00000027654/1-525 ----MDLPVG PGAAGPSNVP AFLTKLWTLV SDPDTDALIC WSP------- bmy_07571T0/1-611 MGIFRLFPVP QDCARPRALP AQRAALSP-- SHPGERASAR VLAPRATSTL BACU001458/1-535 ----MDLPVG PGAAGPSNVP AFLTKLWTLV SDPDTDALIC WSPGSAQFRW ENSTTRP00000006082/1-476 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000431512/1-529 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027654/1-525 ---------- ---------- ---------- ---------- ---------- bmy_07571T0/1-611 DGGTAPAPRR LHDPCVSW-- ---------- ---------- ---------- BACU001458/1-535 RALCPGGPRS FSDELPGWWG QQPLGRNQDL AQELESVTLV EKEKERKQKA ENSTTRP00000006082/1-476 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000431512/1-529 ------SGNS FHVFDQGQFA KEVLPKYFKH NNMASFVRQL NMYGFRKVVH ENSBTAP00000027654/1-525 ------SGNS FHVLDQGQFA KEVLPKYFKH SNMASFVRQL NMYGFRKVVH bmy_07571T0/1-611 -----QSGNS FHVLDQGQFA KEVLPKYFKH SNMASFVRQL NMYGFRKVVH BACU001458/1-535 KRHKVPSGNS FHVLDQGQFA KEVLPKYFKH SNMASFVRQL NMYGFRKVVH ENSTTRP00000006082/1-476 ------SGNS FHVLDQGQFA KEVLPKYFKH SNMASFVRQL NMYGFRKVVH 151 200 ENSP00000431512/1-529 IEQGGLVKPE RDDTEFQHPC FLRGQEQLLE NIKRKVTS-- ---------- ENSBTAP00000027654/1-525 IEQGGLVKPE RDDTEFQHPC FLRGQEQLLE NIKRKVTS-- ---------- bmy_07571T0/1-611 IEQGGLVKPE RDDTEFQHPC FLRGQEQLLE NIKRKVTSVS SRPPSPTSLD BACU001458/1-535 IEQGGLVKPE RDDTEFQHPC FLRGQEQLLE NIKRKVTSA- ------ISVT ENSTTRP00000006082/1-476 IEQGGLVKPE RDDTEFQHPC FLRGQEQLLE NIKRKVTS-- ---------- 201 250 ENSP00000431512/1-529 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027654/1-525 ---------- ---------- ---------- ---------- ---------- bmy_07571T0/1-611 LPPGRQQQQR PLPALLAWPG CTEPSSCWQP LLHQPPQRRP LQTGSPLALS BACU001458/1-535 APLGTQ---- ---------- ---------- ---------- ---------- ENSTTRP00000006082/1-476 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000431512/1-529 -VSTLKSEDI KIRQDSVTKL LTDVQLMKGK QECMDSKLLA MKHENEALWR ENSBTAP00000027654/1-525 -VSTLRSEDI KIRQDSVTKL LTDVQLMKGK QESMDSKLLA MKHENEALWR bmy_07571T0/1-611 AVSTLRSEDI KIHQDSVTKL LTDVQLMKGK QESMDSRLLA MKHENEALWR BACU001458/1-535 -VSTLRSEDI KIHQDSVTKL LTDVQLMKGK QESMDSKLLA MKHENEALWR ENSTTRP00000006082/1-476 -VSTLRSEDI KIHQDSVTKL LTDVQLMKGK QESMDSKLLA MKHENEALWR 301 350 ENSP00000431512/1-529 EVASLRQKHA QQQKVVNKLI QFLISLVQSN RILGVKRKIP LMLNDSGSAH ENSBTAP00000027654/1-525 EVASLRQKHA QQQKVVNKLI QFLISLVQSN RILGVKRKIP LMLNDGGPAH bmy_07571T0/1-611 EVASLRQKHA QQQKVVNKLI QFLISLVQSN RILGVKRKIP LMLNDGSSAH BACU001458/1-535 EVASLRQKHA QQQKVVNKLI QFLISLVQSN RILGVKRKIP LMLNDGSSAH ENSTTRP00000006082/1-476 EVASLRQKHA QQQKVVNKLI QFLISLVQSN RILGVKRKIP LMLNDSSSAH 351 400 ENSP00000431512/1-529 SMPKYSRQFS LEHVHGSGPY SAPSPAYSSS SLYAPDAVAS SGPIISDITE ENSBTAP00000027654/1-525 PMPKYGRQYS LEHIHGPGPY PAPSPAYSGS SLYSPDAVTS SGPIISDITE bmy_07571T0/1-611 SMPKYGRQYS LEHIHGSGPY SAPSPAYSGS SLYPPDAVAS SGPIISDITE BACU001458/1-535 SMPKYGRQYS LEHIHGSGPY SA-------- ---------- ---------- ENSTTRP00000006082/1-476 SMPKYGRQFS LERIHGPGPY SAQSPAYSGS SLYPPDAVAS SGPIISDITE 401 450 ENSP00000431512/1-529 LAPASPMASP GGSIDERPLS SSPLVRVKEE PPSPPQSPRV EEASPGRPSS ENSBTAP00000027654/1-525 LAPGSPVASS GGSVDERPLS SSPLVRVKEE PPSPPQSPRA EGASPGRPSS bmy_07571T0/1-611 LAPGSPLASA GGSVAE---- -SPLVRVKEE PPSPPRSPQA EGASPSQPSS BACU001458/1-535 ---------- ---------- ---------- ---------- EDASPSQPSS ENSTTRP00000006082/1-476 LAPGSPLASA GGSVAERPLS SSPLVRVKEE PPSPPRSPRA EDASPSQPSS 451 500 ENSP00000431512/1-529 -VDTLLSPTA LIDSILRESE PAPASVTALT DARGHTDTEG RPPSPPPTST ENSBTAP00000027654/1-525 MVETPLSPTT LIDSILRESE PTPVA----- STTPLVDTGG RPPSPLPASA bmy_07571T0/1-611 VVETPLSPTA LIDSILRESE PTPAA----- SAPALADAGG RPPSPRPASA BACU001458/1-535 MVETPLSPTA LIDSILRESE PTPAA----- SAPALADAGG RPPSPRPASA ENSTTRP00000006082/1-476 VVETPLSPTA LIDSILRESE PAPAA----- SAPALADAGG RPPSPRPASA 501 550 ENSP00000431512/1-529 PEKCLSVACL DKNELSDHLD AMDSNLDNLQ TMLSSHGFSV DTSALLDLFS ENSBTAP00000027654/1-525 PEKCLSVACL DKTELSDHLD AMDSNLDNLQ TMLTSHGFSV DTSTLLDLFS bmy_07571T0/1-611 PEKCLSVACL DKTELSDHLD AMDSNLDSLQ TMLTSHGFSV DTSTLLDLFS BACU001458/1-535 PEKCLSVACL DKTELSDHLD AMDSNLDSLQ TMLTSHGFSV DTSTLLDLFS ENSTTRP00000006082/1-476 PEKCLSVACL DKTELSDHLD AMDSNLDNLQ TMLTSHGFSV DTSTLLDLFS 551 600 ENSP00000431512/1-529 PSVTVPDMSL PDLDSSLAS- ---IQELLSP QEPPRPPEAE NSSPDSGKQL ENSBTAP00000027654/1-525 PSVTVPDMSL PDLDSSLAS- ---IQELLSP QEPPRPLEAE KSSPDSGKQL bmy_07571T0/1-611 PSVTVPDMSL PDLDSSLAS- ---IQELLSP QEPPRPLEAE SSSPDSGKQL BACU001458/1-535 PSVTVPDMSL PDLDSSLASV RRQIQELLSP QEPPRPLEAE SSSPDSGKQL ENSTTRP00000006082/1-476 PSVTVPDMSL PDLDSSLAS- ---IQELLSP QEPPRPP--- -------KQL 601 650 ENSP00000431512/1-529 VHYTAQPLFL LDPGSVDTGS NDLPVLFELG EGSYFSEGDG FAEDPTISLL ENSBTAP00000027654/1-525 VHYTAQPLLL LDPGSVDVGS SDLPVLFELG EGSYFSEGDD YSDDPTISLL bmy_07571T0/1-611 VHYTAQPLLL LDPGSVDVGG SDLPVLFELG EGSYFSEGDD YADDPTISLL BACU001458/1-535 VHYTAQPLLL LDPGSVDVGG SDLPVLFELG EGSYFSEGDD YTDDPTISLL ENSTTRP00000006082/1-476 GLYTAQPLLL LDPGSVDVRG GDLPVLFELG DGSYFSEGDD YTDDPTISLL 651 700 ENSP00000431512/1-529 TGSEPPKAKD PTVS ENSBTAP00000027654/1-525 TGSEPPKAKD PTVS bmy_07571T0/1-611 TGSEPPKAKD PTVS BACU001458/1-535 TGSEPPKAKD PTVS ENSTTRP00000006082/1-476 TGSEPPKAKD PTVS