KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:27 2014 Check: 00 .. Name: ENSP00000301215/1-670 Len: 683 Check: 4214 Weight: 1.00 Name: ENSBTAP00000027659/1-677 Len: 683 Check: 7953 Weight: 1.00 Name: ENSTTRP00000007897/1-671 Len: 683 Check: 5361 Weight: 1.00 Name: bmy_17410T0/1-677 Len: 683 Check: 4500 Weight: 1.00 Name: BACU019437/1-672 Len: 683 Check: 7641 Weight: 1.00 // 1 50 ENSP00000301215/1-670 MAEVV---AE VAEMPTQMSP GAVEMSTPMS AEMMEMSTEV TEMTPGEALA ENSBTAP00000027659/1-677 MAEVVAEVAE VAEMPTQMSP RVMEMSAPIL GEKMELSTEL TEMTPGEAVA ENSTTRP00000007897/1-671 MAEVVAEAAE VAEMPTQMSP GAVEMSTPTL GEKMEMLTEV TEMTPGEALA bmy_17410T0/1-677 MAEVVAEAAE VAEMPTQMSP GAVEMSTPML GEKMEMLTEV TEMTPGEALA BACU019437/1-672 MAEVVAEAAE VAEMPTQMSP GAVEVSAPML GEKMEMLTEV TEMTPGEALA 51 100 ENSP00000301215/1-670 SSLFFQHHQF MCSECGSLYN TLEEVLSHQE QHMLAVSEEE ALTTQNVGLE ENSBTAP00000027659/1-677 SSLFFQ---F MCSECGNLYN TLEEVLSHQE QHVPTVTEEE ALTTQDTGLE ENSTTRP00000007897/1-671 SSLFFQ---F MCSECGSLYN TLEEVLSHQE QHVPTVTEEE ALTTQDTGLE bmy_17410T0/1-677 SSLFFQ---F MCSECGSLYN TLEEVLSHQE QHVPTVTEEE ALTTQDTGLE BACU019437/1-672 SSLFFQ---F MCSECGSLYN TLEEVLSHQE QHVPTVTEEE ALTTQDTGLE 101 150 ENSP00000301215/1-670 PELVPGAE-G PFQCGECSQL ILSPGELLAH QDAHLRESAN QIQYQCWDCQ ENSBTAP00000027659/1-677 PELVPGTEEG PFQCGECSQL ILSPRELLAH QDAHLRESAS QIQYQCGDCQ ENSTTRP00000007897/1-671 PELVPGTEDG PFQCGECSQL ILSPSELLAH QDAHLRESAS QIQYQCGDCQ bmy_17410T0/1-677 PELVPGTEDG PFQCGECSQL ILSPSELLAH QDAHLRESAS QIQYQCGDCQ BACU019437/1-672 PELVPGTEDG PFQCGECSQL ILSPSELLAH QDAHLRESAS QIQYQCGDCQ 151 200 ENSP00000301215/1-670 ELFPSPELWV AHRKAQHLS- ATVAEPPVPP PLPPPTPLPP PSPPSEVKME ENSBTAP00000027659/1-677 ELFPSPELWV AHRKAQHLS- TAAAKPPVPP PLPPVTPPPP PPAPLEVKME ENSTTRP00000007897/1-671 ELFPSPELWV AHRKARHLSA AAAAKPPVPP PLPPLPSPPP PPAPPEVKME bmy_17410T0/1-677 ELFPSPELWV AHRKAQHLSA AAAAKPPVPP PLPPLPSPPP PPAPPEVRME BACU019437/1-672 ELFPSPELWV AHRKAQHLSA AAAAKPPVPP PLPPLPSPPP PPAPPEVRME 201 250 ENSP00000301215/1-670 PYECPECSTL CATPEEFLEH QGTHFDSLEK EERNGLEEEE EDDEEDEEDD ENSBTAP00000027659/1-677 PYECPECSTL CTTPEEFLEH QGTHFDSLEK EEHNGLEEEE EDDE--DDNE ENSTTRP00000007897/1-671 PYECPECSAL CTTPEEFLEH QGTHFDSLEK EERNGLEEEE EGEDDDDDDD bmy_17410T0/1-677 PYECPECSAL CTTPEEFLEH QGTHFDSLEK EERNGLEEEE EDEDEEDDDE BACU019437/1-672 PYECPECSAL CTTPEEFLEH QGTHFDSLEK EERNGLEEEE EGEDEEDDDE 251 300 ENSP00000301215/1-670 EEMEDEEAMA EVGDDAVGGD ESTAGWAQGC GDCPQHQPSA GARRQHRRTA ENSBTAP00000027659/1-677 ETEEEEEAAA EVGDDAKGGD KSAAGQAQGS GDGPPHCTSA GTRRRHRRAS ENSTTRP00000007897/1-671 ET-EDEEAAA EVGDDAKGAD KSTASEAQGC GDCPQRCTSA GARRRHRRAS bmy_17410T0/1-677 ETEDEEEAAA ELGDDAKGAD KSTAGQAQGC GDCPQRCTSA GARRRHRRAS BACU019437/1-672 ETEDEEEAAA EVGDDAKGAD KSTAGQAQGC GDCPQRCTSA GARRRHRRAS 301 350 ENSP00000301215/1-670 HSPASATHPF HCSQCQRSFS SANRLQAHGR AHVGGTHECT TCSKVFKKAA ENSBTAP00000027659/1-677 HGPASAAHPF YCSQCQRSFS SANRLLAHGR AHVGGTHECT TCSKVFKKAA ENSTTRP00000007897/1-671 RGPASVAHPF HCSQCQRSFS SANRLLAHGR AHVGGTHECT TCSKVFKKAA bmy_17410T0/1-677 RGPASAAHPF HCSQCQRSFS SANRLLAHGR AHVGGTHECT TCSKVFKKAA BACU019437/1-672 RGPASAAHPF HCSQCQRSFS SANRLLAHGR THVGGTHECT TCSKVFKKAA 351 400 ENSP00000301215/1-670 SLEQHLRLHR GEARYLCVDC GRGFGTELTL VAHRRAHTAN PLHRCRCGKT ENSBTAP00000027659/1-677 SLEQHLRLHR GEARYLCVDC GRGFGTELTL VAHRRAHTAN PLHRCRCGKT ENSTTRP00000007897/1-671 SLEQHLRLHR GEARYLCVDC GRGFSTELTL VAHRRAHTAN PLHRCRCGKT bmy_17410T0/1-677 SLEQHLRLHR GEARYLCVDC GRGFSTELTL VAHRRAHTAN PLHRCRCGKT BACU019437/1-672 SLEQHLRLHR GEARYLCVDC GRGFSTELTL VAHRRAHTAN PLHRCRCGKT 401 450 ENSP00000301215/1-670 FSNMTKFLYH RRTHAGKSGA PP-----TGA T--APPAPAE PTP-PPPPPA ENSBTAP00000027659/1-677 FSNMTKFLYH RRTHAGKSGA PPSAAPPTVA SAVASLAPAE PTPPPPAPPT ENSTTRP00000007897/1-671 FSNMTKFLYH RRTHAGKSGA PP-----TAA A--ASPAPAE PTP-PALPPA bmy_17410T0/1-677 FSNMTKFLYH RRTHAGKSGA PPMAAAAAAA A--ASPAPAE STP-PPLPPA BACU019437/1-672 FSNMTKFLYH RRTHAGKSGA PPTAA--AVA A--ASPAPAE ----PTXPPA 451 500 ENSP00000301215/1-670 PPAQLPCPQC SKSFASASRL SRHRRAVHGP PERRHRCGVC GKGFKKLIHV ENSBTAP00000027659/1-677 PPAQLPCPQC PKSFASASRL SRHRRAVHGP PERRHRCGVC GKGFKKLVHV ENSTTRP00000007897/1-671 PPAQLPCPQC TKSFASASRL SRHRRAVHGP PERRHRCGVC GKGFKKLVHV bmy_17410T0/1-677 PPAQLPCPQC SKSFASASRL SRHRRAVHGP PERRHRCGVC GKGFKKLVHV BACU019437/1-672 PPAQLPCPQC SKSFASASRL SRHRRAVHGP PERRHRCGVC GKGFKKLVHV 501 550 ENSP00000301215/1-670 RNHLRTHTGE RPFQCHSCGK TFASLANLSR HQLTHTGARP YQCLDCGKRF ENSBTAP00000027659/1-677 RNHLRTHTGE RPFQCHACGK TFASLANLSR HQLTHTGVRP YQCLDCGKRF ENSTTRP00000007897/1-671 RNHLRTHTGE RPFQCHSCGK TFASLANLSR HQLTHTGVRP YQCLDCGKRF bmy_17410T0/1-677 RNHLRTHTGE RPFQCHSCGK TFASLANLSR HQLTHTGVRP YQCLDCGKRF BACU019437/1-672 RNHLRTHTGE RPFQCHSCGK TFASLANLSR HQLTHTGVRP YQCLDCGKRF 551 600 ENSP00000301215/1-670 TQSSNLQQHR RLHLRPVAFA RAPRLPITGL YNKSPYYCGT CGRWFRAMAG ENSBTAP00000027659/1-677 TQSSNLQQHR RLHLRPVAFA RAPRLPITGL YNKSPYYCGT CGRWFRAMAG ENSTTRP00000007897/1-671 TQSSNLQQHR RLHLRPVAFA RAPRLPITGL YNKSPYYCGT CGRWFRAMAG bmy_17410T0/1-677 TQSSNLQQHR RLHLRPVAFA RAPRLPITGL YNKSPYYCGT CGRWFRAMAG BACU019437/1-672 TQSSNLQQHR RLHLRPVAFA RAPRLPITGL YNKSPYYCGT CGRWFRAMAG 601 650 ENSP00000301215/1-670 LRLHQRVHAR ARTLTLQPPR SPSPAPPPPP EPQQTIMCTE LGETIAIIET ENSBTAP00000027659/1-677 LRLHQRVHAQ ARTLTLQPPR SPPPAPPPPP EPQQTIMCTE LGETIAIIET ENSTTRP00000007897/1-671 LRLHQRVHAQ ARTMTLQPPR SPPPAPPPPP EPQQTIMCTE LGETIAIIET bmy_17410T0/1-677 LRLHQRVHAQ ARTMTLQPPR SPPPAPPPPP EPQQTIMCTE LGETIAIIET BACU019437/1-672 LRLHQRVHAQ ARTMTLQPPR SPPPAPPPPP EPQQTIMCTE LGETIAIIET 651 700 ENSP00000301215/1-670 SQPLALEDTL QLCQAALGAS EAGGLLQLDT AFV ENSBTAP00000027659/1-677 SQPLALADTL QLCQAALGAS EASGLLQLDT AFM ENSTTRP00000007897/1-671 SQPLALVDTL QLCQAALGAT EASGLLQLDT AFV bmy_17410T0/1-677 SQPLALVDTL QLCQAALGAT EASGLLQLDT AFV BACU019437/1-672 SQPLALVDTL QLCQAALGAT EASGLLQLDT AFV