KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:29 2014 Check: 00 .. Name: ENSTTRP00000000083/1-920 Len: 972 Check: 6720 Weight: 1.00 Name: ENSP00000359829/1-942 Len: 972 Check: 7340 Weight: 1.00 Name: ENSBTAP00000027667/1-912 Len: 972 Check: 6429 Weight: 1.00 Name: bmy_13222T0/1-772 Len: 972 Check: 5612 Weight: 1.00 Name: BACU014791/1-910 Len: 972 Check: 2465 Weight: 1.00 // 1 50 ENSTTRP00000000083/1-920 ---------- ----VLPHLE SLEKQENISN KMSAFRGHCP HLDSVGEITK ENSP00000359829/1-942 MTGSNSHITI LTLKVLPHFE SLGKQEKIPN KMSAFRNHCP HLDSVGEITK ENSBTAP00000027667/1-912 ---------- ---------- ---------- -MSSFRSHCP HLDSVGEITK bmy_13222T0/1-772 ---------- ---------- ---------- -MSAFRGHCP HLDSVGEITK BACU014791/1-910 ---------- ---------- ---------- -MSAFQGHCP HLDSVGEITK 51 100 ENSTTRP00000000083/1-920 EDLIQKSHGS CQDCKVRGPN LWACLENRCS YVGCGESQID HSTIHSQETK ENSP00000359829/1-942 EDLIQKSLGT CQDCKVQGPN LWACLENRCS YVGCGESQVD HSTIHSQETK ENSBTAP00000027667/1-912 EDLIQKSHGS CQDCKVRGPN LWACLENRCS YVGCGESQVD HSTIHSQETK bmy_13222T0/1-772 EDLIQKSHGS CQDCKVRGPN LWACLENRCS YVGCGESQVD HSTIHSQETK BACU014791/1-910 EDLIQKSHGS CQDCKVRGPN LWACLENRCS YVGCGESQVD HSTIHSQETK 101 150 ENSTTRP00000000083/1-920 HYLTVNLTTL RV-CYACSKE XXXXXXXXXX XXXXXXXXXX QI----FQDF ENSP00000359829/1-942 HYLTVNLTTL RVWCYACSKE VFLDRKLGTQ PSLPHVRQPH QIQENSVQDF ENSBTAP00000027667/1-912 HYLTVNLTTL RVWCYACSKE VFLDRKLGTQ PSLPHVKPLH QIQENGVQDF bmy_13222T0/1-772 HYLTVNLTTL RVWCYACSKE VFLDRKLGTQ PSLPHVKPLH QTQENSVQDF BACU014791/1-910 HYLTVNLTTL RVWCYACSKE VFLDRKLGTQ PSLPHVKPLH QTQENSVQDF 151 200 ENSTTRP00000000083/1-920 KIPSNTTLKT PLVAVFDDLD IEVEEEDELK ARGLTGLKNI GNTCYMNAAL ENSP00000359829/1-942 KIPSNTTLKT PLVAVFDDLD IEADEEDELR ARGLTGLKNI GNTCYMNAAL ENSBTAP00000027667/1-912 KIPSNTTLKT PLVAVFDDLD IEVEEEDELK ARGLTGLKNI GNTCYMNAAL bmy_13222T0/1-772 KIPSNTTLKT PLVAVFDDLD IEVEEEDELK ARGIIIL--- ---------- BACU014791/1-910 KIPSNTTLKT PLVAVFDDLD IEVEEEDELK ARGLTGLKNI GNTCYMNAAL 201 250 ENSTTRP00000000083/1-920 QALSNCPPLT QFFLDCGGLA RTDKKPAICK SYLKLMTELW HKSRPGFVVP ENSP00000359829/1-942 QALSNCPPLT QFFLDCGGLA RTDKKPAICK SYLKLMTELW HKSRPGSVVP ENSBTAP00000027667/1-912 QALSNCPPLT QFFLDCGGLA RTDKKPAICK SYLKLMTELW HKSRPGSVVP bmy_13222T0/1-772 -----IPPLT QFFLDCGGLA RTDKKPAICK SYLKLMTELW HKSRPGFVVP BACU014791/1-910 QALSNCPPLT QFFLDCGGLA RTDKKPAICK SYLKLMTELW HKSRPGFVVP 251 300 ENSTTRP00000000083/1-920 TNLFQGIKTV NPTFRGYSQQ DAQEFLRCLM DLLHEELKEQ VMEVEEDPQT ENSP00000359829/1-942 TTLFQGIKTV NPTFRGYSQQ DAQEFLRCLM DLLHEELKEQ VMEVEEDPQT ENSBTAP00000027667/1-912 TTLFQGIKTV NPTFRGYSQQ DAQEFLRCLM DLLHEELKEQ VMEVEEDPQT bmy_13222T0/1-772 TNLFQGIKTV NPTFRGYSQQ DAQEFLRCLM DLLHEELKEQ VMEVEEDPQT BACU014791/1-910 TNLFQGIKTV NPTFRGYSQQ DAQEFLRCLM DLLHEELKEQ VMEVEEDPQT 301 350 ENSTTRP00000000083/1-920 IMTEETMEED KSQSDADFQS CESCSSSDKA ENENGSRSFS EDNNETTMLI ENSP00000359829/1-942 ITTEETMEED KSQSDVDFQS CESCSNSDRA ENENGSRCFS EDNNETTMLI ENSBTAP00000027667/1-912 IMTEETMEED KSQSDVDFQS CESCSSSDKA ENENGSRSFS EDNNETTMLI bmy_13222T0/1-772 IMTEETVEED KSQSDADFQS CESCSSSDKA ENENGSRSFS EDNNETTMLI BACU014791/1-910 TMTEETVEED KSQSDADFQS CESCSSSDKA ENENGSRSFS EDNNETTMLI 351 400 ENSTTRP00000000083/1-920 QDDENNSEMS KDWQKEKMCN KINKANSEGE L--DRDSVSE TVDFNNQETV ENSP00000359829/1-942 QDDENNSEMS KDWQKEKMCN KINKVNSEGE FDKDRDSISE TVDLNNQETV ENSBTAP00000027667/1-912 QDDENNSEMS KDWQKEKMCN KINKVHSEGE LDKDRDSVSE TADLNNQETV bmy_13222T0/1-772 QDDENNSEIS KDWQKEKMCN KINKANSEGE L--DRDSVSE TVDLNNQETV BACU014791/1-910 QDDENNSEMS KDWQKEKMCN KIIKANSEGE L--DRDSVSE TVDLNNQETV 401 450 ENSTTRP00000000083/1-920 KVQIHSRASE YITDVHLNEL STSQTLPSSE GVNPRLSASP PKSGTLWPGL ENSP00000359829/1-942 KVQIHSRASE YITDVHSNDL STPQILPSNE GVNPRLSASP PKSGNLWPGL ENSBTAP00000027667/1-912 KVQIHSRASE YITDVHLNDL STPQILPSNE GVNPRLSASP PKSGNLWPGL bmy_13222T0/1-772 KVQIHSRASE YITDVHLNEL STSQTLPSSE GVNPRLSASP PKSGSLWPGL BACU014791/1-910 KVQIHSRASE YITDVHLNEL STSQTFPSSE GVNPRLSASP PKSGSLWPGL 451 500 ENSTTRP00000000083/1-920 APTHKK---- ---------- ---------- -------XXX XXXKRKQHKK ENSP00000359829/1-942 APPHKK---- ---------- ---------- -----AQSA- SPKRKKQHKK ENSBTAP00000027667/1-912 PPTHKK---- ---------- ---------- -----VQSAL SPKRKKQHKK bmy_13222T0/1-772 APTHKKGRSF SYSEKNAKGT TLISKKNFYP CFSILAQSAS SPKRKKQHKK BACU014791/1-910 APTHKK---- ---------- ---------- -----AQSAS SPKRKKQHKK 501 550 ENSTTRP00000000083/1-920 YRSVISDIFD GTIISSVQCL TCDRVSVTLE TFQDLSLPIP GKEDLAKLHS ENSP00000359829/1-942 YRSVISDIFD GTIISSVQCL TCDRVSVTLE TFQDLSLPIP GKEDLAKLHS ENSBTAP00000027667/1-912 YRSVISDIFD GTIISSVQCL TCDRVSVTLE TFQDLSLPIP GKEDLAKLHS bmy_13222T0/1-772 YRSVISDVFD GTIISSVQCL TCDRVSVTLE TFQDLSLPIP GKEDLAKLHS BACU014791/1-910 YRSVISDIFD GTIISSVQCL TCDRVSVTLE TFQDLSLPIP GKEDLAKLHS 551 600 ENSTTRP00000000083/1-920 SSHPTSIVKA GSCGEAYAPQ GWIAFFMEYV KRFVVSCVPS WFWGPIVTLQ ENSP00000359829/1-942 SSHPTSIVKA GSCGEAYAPQ GWIAFFMEYV KRFVVSCVPS WFWGPVVTLQ ENSBTAP00000027667/1-912 SSHPTSIVKA GSCGEAYAPQ GWIAFFMEYV KRFVVSCVPS WFWGPVVTLQ bmy_13222T0/1-772 SSHPTSIVKA GSCGEAYAPQ GWIAFFMEYV KR-------- ---------- BACU014791/1-910 SSHPTSIVKA GSCGEAYAPQ GWIAFFMEYV KRFVVSCVPS WFWGPIVTLQ 601 650 ENSTTRP00000000083/1-920 DCLAAFFARD ELKGDNMYSC EKCKKLRNGV KFCKVQKFPE ILCIHLKRFR ENSP00000359829/1-942 DCLAAFFARD ELKGDNMYSC EKCKKLRNGV KFCKVQNFPE ILCIHLKRFR ENSBTAP00000027667/1-912 DCLAAFFARD ELKGDNMYSC EKCKKLRNGV KFCKVQKFPE ILCIHLKRFR bmy_13222T0/1-772 ---------- ---------- -----LRNGV KFCKVQKFPE ILCIHLKRFR BACU014791/1-910 DCLAAFFARD ELKGDNMYSC EKCKKLRNGV KFCKVQKFPE ILCIHLKRFR 651 700 ENSTTRP00000000083/1-920 HELMFSTKIS THVSFPLEGL DLQPFLAKDS PAQIVTYDLL SVICHHGTAS ENSP00000359829/1-942 HELMFSTKIS THVSFPLEGL DLQPFLAKDS PAQIVTYDLL SVICHHGTAS ENSBTAP00000027667/1-912 HELMFSTKIS THVSFPLEGL DLQPFLAKDS PVQIVTYDLL SVICHHGTAS bmy_13222T0/1-772 HELMFSTKIS THVSFPLEGL DLQPFLAKDS PAQIVTYDLL SVICHHGTAS BACU014791/1-910 HELMFSTKIS THVSFPLEGL DLQPFLAKDS PAQIITYDLL SVICHHGTAS 701 750 ENSTTRP00000000083/1-920 SGHYIAYCRN NLNNLWYEFD DQSVTEVSES TVQNAEAYVL FYRKSSEEAQ ENSP00000359829/1-942 SGHYIAYCRN NLNNLWYEFD DQSVTEVSES TVQNAEAYVL FYRKSSEEAQ ENSBTAP00000027667/1-912 SGHYIAYCRN NLNNLWYEFD DQSVTEVSES TVQNAEAYVL FYRKSSEEAQ bmy_13222T0/1-772 SGHYIAYCRN NLNNLWYEFD DQSVTEVSES TVQNAEAYVL FYRKSSEEAQ BACU014791/1-910 SGHYIAYCRN NLNNLWYEFD DQSVTEVSES TVQNAEAYVL FYRKSSEEAQ 751 800 ENSTTRP00000000083/1-920 KERRRISNLL NIMEPSLLQF YISRQWLNKF KTFAEPGPIS NNDFLCIHGG ENSP00000359829/1-942 KERRRISNLL NIMEPSLLQF YISRQWLNKF KTFAEPGPIS NNDFLCIHGG ENSBTAP00000027667/1-912 KERRRISNLL NIMEPSLLQF YISRQWLNKF KTFAEPGPIS NNDFLCIHGG bmy_13222T0/1-772 KERRRISNLL NIMEPSLLQF YISRQWLNKF KTFAEPGPIS NNDFLCIHGG BACU014791/1-910 KERRRISNLL NIMEPSLLQF YISRQWLNKF KTFAEPGPIS NNDFLCIHGG 801 850 ENSTTRP00000000083/1-920 VPPRKASYIE DLVLMLPQNI WDNLYSRYGG GPAVNHLYIC HTCQIEAEKI ENSP00000359829/1-942 VPPRKAGYIE DLVLMLPQNI WDNLYSRYGG GPAVNHLYIC HTCQIEAEKI ENSBTAP00000027667/1-912 VPPRKAGYIE DLVLMLPQNI WDNLYSRYGG GPAVNHLYIC HTCQIEAEKI bmy_13222T0/1-772 VPPRKASYIE DLVLMLPQNI WDNLYSRYGG GPAVNHLYIC HTCQIEAEKI BACU014791/1-910 VPPRKASYIE DLVLMLPQNI WDNLYSRYGG GPAVNHLYIC HTCQIEAEKI 851 900 ENSTTRP00000000083/1-920 EKRRKIELEI FIRLNRAFQE EDSPATFYCI SMQWFREWES FVKGKDGDPP ENSP00000359829/1-942 EKRRKTELEI FIRLNRAFQK EDSPATFYCI SMQWFREWES FVKGKDGDPP ENSBTAP00000027667/1-912 EKRRKTELEI FIRLNRAFQE EDSPATFYCI SMQWFREWES FVKGKDGDPP bmy_13222T0/1-772 EKRRKIELEI FIRVKK---- ---------- ---------- ---------- BACU014791/1-910 EKRRKIELEI FIRLNRAFQE EDSPATFYCI SMQWFREWES FVKGKDGDPP 901 950 ENSTTRP00000000083/1-920 GPIDNTKIAV TKCGNVILRQ GADSGQISEE TWNFLQSIYG GGPEVILRPP ENSP00000359829/1-942 GPIDNTKIAV TKCGNVMLRQ GADSGQISEE TWNFLQSIYG GGPEVILRPP ENSBTAP00000027667/1-912 GPIDNTKIAV TKCGNVILRQ GADSGQISEE TWNFLQSIYG GGPEVILRPP bmy_13222T0/1-772 ---------- ---------- ---------- ---------- ---------- BACU014791/1-910 GPIDNTKIAV TKCGNVILRQ GADSGQISEE TWNFLQSIYG GGPEVILRPP 951 1000 ENSTTRP00000000083/1-920 VVHVDPDAVQ AEEKIEVETR SL ENSP00000359829/1-942 VVHVDPDILQ AEEKIEVETR SL ENSBTAP00000027667/1-912 VVHVDPDAVQ AEEKIEVETR SL bmy_13222T0/1-772 ---------- ---------- -- BACU014791/1-910 VVHVDPDVVQ AEEKIEVETR SL