KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:32 2014 Check: 00 .. Name: ENSTTRP00000016056/1-363 Len: 393 Check: 2745 Weight: 1.00 Name: bmy_10239T0/1-214 Len: 393 Check: 6830 Weight: 1.00 Name: ENSP00000344572/1-364 Len: 393 Check: 2645 Weight: 1.00 Name: BACU003490/1-386 Len: 393 Check: 7571 Weight: 1.00 Name: ENSBTAP00000027685/1-357 Len: 393 Check: 2503 Weight: 1.00 // 1 50 ENSTTRP00000016056/1-363 MASELDIFVG NTTLIDEDVY RLWLDGYSXX XXXXXXXXXX XXXXXXXXXX bmy_10239T0/1-214 ---------- ---------- ---------- ---------- ---------- ENSP00000344572/1-364 MTSELDIFVG NTTLIDEDVY RLWLDGYSVT DAVALRVRSG ILEQTGATAA BACU003490/1-386 MTSELDIFVG NTTLIDEDVY RLWLDGYSVS DAVALRVRSG ILEQTGATAA ENSBTAP00000027685/1-357 MTSELDIFVG NTTLIDEDVY RLWLDGYSVS DAVALRVRSG ILEQTGATAA 51 100 ENSTTRP00000016056/1-363 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXYYAFD bmy_10239T0/1-214 ---------- ---------- ---------- ---------- ---------- ENSP00000344572/1-364 VLQSDTMDHY RTFHMLERLL HAPPKLLHQL IFQIPPSRQA LLIERYYAFD BACU003490/1-386 VLQSDTMDHY RTFQMLERLL HAPPKLLHQL IFQIPPSRQA LLIERYYAFD ENSBTAP00000027685/1-357 VLQSDTMDHY RTFHMLERLL HAPPKLLHQL IFQIPPSRQA LLIERYYAFD 101 150 ENSTTRP00000016056/1-363 EAFVREVLGK KLSKGTKKDL DDISTKTGIT LKSCRRQFDN FKRVFKVVEE bmy_10239T0/1-214 ---------- ---------- ---------- ---------- ---------- ENSP00000344572/1-364 EAFVREVLGK KLSKGTKKDL DDISTKTGIT LKSCRRQFDN FKRVFKVVEE BACU003490/1-386 EAFVREVLGK KLSKGTKKDL DDISTKTGIT LKSCRRQFDN FKRVFKVVEE ENSBTAP00000027685/1-357 EAFVREVLGK KLSKGTKKDL DDISTKTGIT LKSCRRQFDN FKRVFKVVEE 151 200 ENSTTRP00000016056/1-363 MRGSLVDNIQ QHFLLSDRLA RDYAAIVFFA NNRFETGKKK LQYLSFGDFA bmy_10239T0/1-214 MRGSLVDNIQ QHFLLSDRLA RDYAAIVFFA NNRFETGKKK LQYLSFGDFA ENSP00000344572/1-364 MRGSLVDNIQ QHFLLSDRLA RDYAAIVFFA NNRFETGKKK LQYLSFGDFA BACU003490/1-386 MRGSLVDNIQ QHFLLSDRLA RDYAAIVFFA NNRFETGKKK LQYLSFGDFA ENSBTAP00000027685/1-357 MRGSLVDNIQ QHFLLSDRLA RDYAAIVFFA NNRFETGKKK LQYLSFGDFA 201 250 ENSTTRP00000016056/1-363 FCAELMIQNW TLGAVGEAPT DPDPQADDMD MDLDKEFLQD LKELKVLVAD bmy_10239T0/1-214 FCAELMIQNW TLGAV----- --DPQADDMD MDLDKEFLQD LKELKVLVAD ENSP00000344572/1-364 FCAELMIQNW TLGAVGEAPT DPDSQMDDMD MDLDKEFLQD LKELKVLVAD BACU003490/1-386 FCAELMIQNW TLGAV----- --DPQADDMD MDLDKEFLQD LKELKVLVAD ENSBTAP00000027685/1-357 FCAELMIQNW TLGAV----- --DSQVDDMD MDLDKEFLQD LKELKVLVAD 251 300 ENSTTRP00000016056/1-363 KDLLDLHKSL VCTALRGKLG VFSEMEANFK NLSRGLVNVA AKLTHNKDVR bmy_10239T0/1-214 KDLLDLHKSL VCTALRGKLG VFSEMEANFK NLSRGLVNVA AKLTHNKDVR ENSP00000344572/1-364 KDLLDLHKSL VCTALRGKLG VFSEMEANFK NLSRGLVNVA AKLTHNKDVR BACU003490/1-386 KDLLDLHKSL VCTALRGKLG VFSEMEANFK NLSRGLVNVA AKLTHNKDVR ENSBTAP00000027685/1-357 KDLLDLHKSL VCTALRGKLG VFSEMEANFK NLSRGLVNVA AKLTHNKDVR 301 350 ENSTTRP00000016056/1-363 DLFV-LVEK- ---------- ---------- --------FV EPCRSDHWPL bmy_10239T0/1-214 DLFVDLVEKV SCPARCPLSP ILACPWAVPV LDVTLDPQFV EPCRSDHWPL ENSP00000344572/1-364 DLFVDLVEK- ---------- ---------- --------FV EPCRSDHWPL BACU003490/1-386 DLFVDLVEKV SCPARCRLIP ILACPWAVPV LDVTLGPQFV EPCRSDHWPL ENSBTAP00000027685/1-357 DLFVDLVEK- ---------- ---------- --------FV EPCRSDHWPL 351 400 ENSTTRP00000016056/1-363 NDVRLFLNQY SASVHSLDGF RHQALWDRYM GTLRGCLLRL CHD bmy_10239T0/1-214 NDVRLFLNQY SASVHSLDGF R--------- ---------- --- ENSP00000344572/1-364 SDVRFFLNQY SASVHSLDGF RHQALWDRYM GTLRGCLLRL YHD BACU003490/1-386 NDVRLFLNQY SASVHSLDGF RHQALWDRYM GTLRGCLLRL CHD ENSBTAP00000027685/1-357 NDVRLFLNQY SASVHSLDGF RHQALWDRYM GTLRGCLLRL YHD