KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:34 2014 Check: 00 .. Name: BACU006525/1-1535 Len: 1550 Check: 9110 Weight: 1.00 Name: ENSTTRP00000014152/1-1374 Len: 1550 Check: 1512 Weight: 1.00 Name: ENSP00000354733/1-1366 Len: 1550 Check: 3680 Weight: 1.00 Name: bmy_06660T0/1-966 Len: 1550 Check: 288 Weight: 1.00 Name: ENSBTAP00000027693/1-1374 Len: 1550 Check: 1660 Weight: 1.00 // 1 50 BACU006525/1-1535 ---------- MLAAGPTMDG EFPPHEPPPA GSVLYSPPPL QTPLCGPSVQ ENSTTRP00000014152/1-1374 MPLRPGVEPP MLAVGPTMDG EFPPHEPPPA GSVLYSPPPL QN-------- ENSP00000354733/1-1366 ---------- MLAVGPAMDR DYPQHEPPPA GSLLYSPPPL QS-------- bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 ---------- MLAVGPAMDG ELPPHEAPPA GSVLYSPPPL QTPLCGPSVQ 51 100 BACU006525/1-1535 DAMLHYPWWN SFSPTPYPAF SSESHQFMNS -SFIVGQPCM DTSYGPAAAT ENSTTRP00000014152/1-1374 -AMLHYPWWS SFSPTPYPAF SSESHQFMNS -SFIVGQPCV DTSYGPAAAT ENSP00000354733/1-1366 -AMLHCPYWN TFSLPPYPAF SSDSRPFMSS ASFLGSQPCP DTSYAPVATA bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 DTMLHYPWWN SFSPTTYPAF SSESHQFMNS -SFIMGQPCT DPSYGPAATA 101 150 BACU006525/1-1535 PSFPPKSSDF PQDSSYLDDL SNASIFSSSV DSLSDIADTP DFLPADSLSQ ENSTTRP00000014152/1-1374 PSFPPKSSDF PQDSSYLDDL SNASIFSSSV DSLSDIADTP DFLPADSLSQ ENSP00000354733/1-1366 SSLPPKTCDF AQDSSYFEDF SNISIFSSSV DSLSDIVDTP DFLPADSLNQ bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 PSFPPKSSDF PQDSSYLDDL SNASIFSSSV DSLSDIADTP DFPPADSLSQ 151 200 BACU006525/1-1535 VPTIWDVSTG PSAHDKLFLP SGPFTGLEDP VSSLSSTPLL VSYQS---QS ENSTTRP00000014152/1-1374 VPTIWDVSTG PSTHDKLFLP SGPFTGLEDP VSSLSSTPLL VSYQS---QS ENSP00000354733/1-1366 VSTIWDDNPA PSTHDKLFQL SRPFAGFEDF LPS-HSTPLL VSYQEQSVQS bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 VPTIWDVSTG PSAHDKLFPP SGTFTGLEDP VSSLSSTPLL ISYQA---QS 201 250 BACU006525/1-1535 QPEEDDDAEE DEAEELGHAE TYADYVPSKS KLGKQHPDRV VETSTLSSVP ENSTTRP00000014152/1-1374 HPEEDDEAEE DEAEELGHAE TYADYVPSKS KLGKQHPDRV VETSTLSSVP ENSP00000354733/1-1366 QPEEEDEAEE EEAEELGHTE TYADYVPSKS KIGKQHPDRV VETSTLSSVP bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 QPEEDDEAEE DEAEELGHAE TYADYVPSKS KIGRQHPDRV VETSTLSSVP 251 300 BACU006525/1-1535 PPDITYTLAL ASSDSGALSA LQLEAITYAC QQHEVLLPGG QRAGFLIGDG ENSTTRP00000014152/1-1374 PPDITYTLAL ASSDSGALSA LQLEAITYAC QQHEVLLPGG QRAGFLIGDG ENSP00000354733/1-1366 PPDITYTLAL P-SDSGALSA LQLEAITYAC QQHEVLLPSG QRAGFLIGDG bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 PPDITYTLAL PSSDSGALSA LQLEAITYAC QQHEVLLPSG QRAGFLIGDG 301 350 BACU006525/1-1535 AGVGKGRTVA GIILENYLRG RKKALWFSVS NDLKYDAERD LRDIAAPGIA ENSTTRP00000014152/1-1374 AGVGKGRTVA GIILENYLRG RKKALWFSVS NDLKYDAERD LRDIAAPGIA ENSP00000354733/1-1366 AGVGKGRTVA GVILENHLRG RKKALWFSVS NDLKYDAERD LRDIEATGIA bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 AGVGKGRTVA GVILENYLRG RKKALWFSVS NDLKYDAERD LRDIAAPGIA 351 400 BACU006525/1-1535 VHALSKIKYG DNTTSEGVLF ATYSALIGES QAGGQHRTRI RQILEWCGEA ENSTTRP00000014152/1-1374 VHALSKIKYG DNTTSEGVLF ATYSALIGES QAGGQHRTRI RQILEWCGEA ENSP00000354733/1-1366 VHALSKIKYG DTTTSEGVLF ATYSALIGES QAGGQHRTRL RQILDWCGEA bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 VHALSKIKYG DNTTSEGVLF ATYSALIGES QAGGQHRTRI RQILEWCGEA 401 450 BACU006525/1-1535 FNGVIVFDEC HKAKNASSTK MGKAVLDLQN KLPLARVVYA SATGASEPRN ENSTTRP00000014152/1-1374 FDGVXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000354733/1-1366 FEGVIVFDEC HKAKNAGSTK MGKAVLDLQN KLPLARVVYA SATGASEPRN bmy_06660T0/1-966 ---------- ---------- MGKAVLDLQN KLPLARVVYA SATGASEPRN ENSBTAP00000027693/1-1374 FDGVIVFDEC HKAKNASSTK MGKAVLDLQN KLPLARVVYA SATGASEPRN 451 500 BACU006525/1-1535 MIYMSRLGIW GEGTPFRTFE EFLHAIEKRG VGAMEIVAMD MKVSGMYIAR ENSTTRP00000014152/1-1374 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG VGAMEIVAMD MKVSGMYIAR ENSP00000354733/1-1366 MIYMSRLGIW GEGTPFRNFE EFLHAIEKRG VGAMEIVAMD MKVSGMYIAR bmy_06660T0/1-966 MIYMSRLGIW GEGTPFRTFE EFLHAIEKRG VGAMEIVAMD MKVSGMYIAR ENSBTAP00000027693/1-1374 MIYMSRLGIW GEGTPFRTFE EFLHAIEKRG VGAMEIVAMD MKVSGMYIAR 501 550 BACU006525/1-1535 QLSFSGVTFR IEEIPLAPAF EHIYNRAALL WAEALGVFQQ AADWIGLESR ENSTTRP00000014152/1-1374 QLSFSGVTFR IEEIPLAPSF EHIYNRAALL WAEALGVFQQ AADWIGLESR ENSP00000354733/1-1366 QLSFSGVTFR IEEIPLAPAF ECVYNRAALL WAEALNVFQQ AADWIGLESR bmy_06660T0/1-966 QLSFSGVTFR IEEIPLAPAF EHIYNRAALL WAEALGVFQQ AADWIGLESR ENSBTAP00000027693/1-1374 QLSFSGVTFR IEEIPLTPAF ERIYNRAALL WAEALGVFQQ AADWIGLESR 551 600 BACU006525/1-1535 KSLWGQFWSA HQRFFKYLCV AAKVHRLVEL AREELARDKC VVIGLQSTGE ENSTTRP00000014152/1-1374 KSLWGQFWSA HQRFFKYLCV AAKVRRLVEL AREELARDKC VVIGLQSTGE ENSP00000354733/1-1366 KSLWGQFWSA HQRFFKYLCI AAKVRRLVEL AREELARDKC VVIGLQSTGE bmy_06660T0/1-966 KSLWGQFWSA HQRFFKYLCV AAKVRRLVEL AREELARDKC VVIGLQSTGE ENSBTAP00000027693/1-1374 KSLWGQFWSA HQRFFKYLCV AAKVHRLVEL AQEELAQDKC VVIGLQSTGE 601 650 BACU006525/1-1535 ARTREVLGEK EGQLDGFVSA AEGVFLSLIQ KHFPSTKRKR ERGPGSKRKR ENSTTRP00000014152/1-1374 ARTREVLGEK EGQLDGFVSA AEGVFLSLIQ KHFPSTKRKR ERGPGNKRKX ENSP00000354733/1-1366 ARTREVLGEN DGHLNCFVSA AEGVFLSLIQ KHFPSTKRKR DRGAGSKRKR bmy_06660T0/1-966 ARTREVLGEK EGQLDGFVSA AEGVFLSLIQ KHFPSTKRKR ERGPGSKRKR ENSBTAP00000027693/1-1374 ARTREVLGEK EGQLDGFVSA AEGVFLSLIQ KHFPSTKRRR ERGAGSKRKR 651 700 BACU006525/1-1535 RPRGRGAKVP RLACDAAGVI RVSDDSSTES DGGLDSDFHS SPESLMDDDV ENSTTRP00000014152/1-1374 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000354733/1-1366 RPRGRGAKAP RLACETAGVI RISDDSSTES DPGLDSDFNS SPESLVDDDV bmy_06660T0/1-966 RPRGRGAKVP RLACDAAGVI RVSDDSSTES DGGLDSDFHS SPESLMDDDV ENSBTAP00000027693/1-1374 RPRGRGAKAP RLVYEAAGVI RISDDSSTES DGGLDSDFHS SPESLLDDDV 701 750 BACU006525/1-1535 VIVDAIGLPA DDRGPLCPPP RDLHGPGVLE RVDRLKQDLL AKVRTLGREL ENSTTRP00000014152/1-1374 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000354733/1-1366 VIVDAVGLPS DDRGPLCLLQ RDPHGPGVLE RVERLKQDLL DKVRRLGREL bmy_06660T0/1-966 VIVDAIGLPA DDRGPLCPPP RDLHGPGVLE RVERLKQDLL AKVRALGREL ENSBTAP00000027693/1-1374 VIVDAIGLPA DDRGPLCPPQ RDLHGPGVLE RVERLKQDLL AKVQALGREL 751 800 BACU006525/1-1535 PVNTLDELID QLGGPECVAE MTGRKGRVVS RSDGTVAFES RAEQGLSIDH ENSTTRP00000014152/1-1374 XXXXXXXXXX XXXXXXXXXX MTGRKGRVVS RSDGTVAFES RAEQGLSIDH ENSP00000354733/1-1366 PVNTLDELID QLGGPQRVAE MTGRKGRVVS RPDGTVAFES RAEQGLSIDH bmy_06660T0/1-966 PVNTLDELID QLGGPECVAE MTGRKGRVVS RSDGTVAFES RAEQGLSIDH ENSBTAP00000027693/1-1374 PVNTLDELID QLGGPECVAE MTGRKGRVVS RPDGTVAFES RAEQGLSIDH 801 850 BACU006525/1-1535 VNLREKERFM SGEKLVAIIS EASSSGISLQ ADRRVPNQRR RVHMTLELPW ENSTTRP00000014152/1-1374 VNLREKERFM SGEKLVAIIS EASSSGISLQ ADRRVPNQRR RVHMTLELPW ENSP00000354733/1-1366 VNLREKQRFM SGEKLVAIIS EASSSGVSLQ ADRRVQNQRR RVHMTLELPW bmy_06660T0/1-966 VNLREKERFM SGEKLVAIIS EASSSGISLQ ADRRVPNQRR RVHMTLELPW ENSBTAP00000027693/1-1374 VNLREKERFM SGEKLVAIIS EASSSGVSLQ ADRRVQNQRR RVHMTLELPW 851 900 BACU006525/1-1535 SADRAIQQFG RTHRSNQVSA PEYIFLISEL AGERRFASIV AKRLESLGAL ENSTTRP00000014152/1-1374 SADRAIQQFG RTHRSNQVSA PEYIFLISEL AGERRFASIV AKRLESLGAL ENSP00000354733/1-1366 SADRAIQQFG RTHRSNQVSA PEYVFLISEL AGERRFASIV AKRLESLGAL bmy_06660T0/1-966 SADRAIQQFG RTHRSNQVSA PEYIFLISEL AGERRFASIV AKRLESLGAL ENSBTAP00000027693/1-1374 SADRAIQQFG RTHRSNQVSA PEYIFLISEL AGERRFASIV AKRLESLGAL 901 950 BACU006525/1-1535 THGDRRATES RDLSKYNFEN KYGARALSCV LTTILSQTES KVPLPQGYPG ENSTTRP00000014152/1-1374 THGDRRATES RDLSKYNFEN KYGARALSCV LTTILSQTES KVPLPQGYPG ENSP00000354733/1-1366 THGDRRATES RDLSKYNFEN KYGTRALHCV LTTILSQTEN KVPVPQGYPG bmy_06660T0/1-966 THGDRRATES RDLSKYNFEN KYGARALSCV LTTILSQTES KVPLPQGYPG ENSBTAP00000027693/1-1374 THGDRRATES RDLSKYNFEN KYGARALSCV LTTILSQTES KVPLPQGYPG 951 1000 BACU006525/1-1535 GDAVFFRDMK QGLLSVGIGG RESRSGCLDV EK-DCSISKF LNRILGLEVH ENSTTRP00000014152/1-1374 GDAAFFRDMK QGLLSVGIGG RESRSGCLDV EK-DCSISKF LNRILGLEVH ENSP00000354733/1-1366 GVPTFFRDMK QGLLSVGIGG RESRNGCLDV EK-DCSITKF LNRILGLEVH bmy_06660T0/1-966 GDAVFFRDMK QGLLSVGIGG RESRSGCLDV EKADCSISKF LNRILGLEVH ENSBTAP00000027693/1-1374 GDAAFFRDMK QGLLSVGIGG RESRSGCLDV EK-DCSISKF LNRILGLEVH 1001 1050 BACU006525/1-1535 KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 K--------- ---------- ---------- ---------- ---------- ENSP00000354733/1-1366 K--------- ---------- ---------- ---------- ---------- bmy_06660T0/1-966 K--------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 K--------- ---------- ---------- ---------- ---------- 1051 1100 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 ---------- ---------- ---------- ---------- ---------- ENSP00000354733/1-1366 ---------- ---------- ---------- ---------- ---------- bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 ---------- ---------- ---------- ---------- ---------- ENSP00000354733/1-1366 ---------- ---------- ---------- ---------- ---------- bmy_06660T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027693/1-1374 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 -QNTLFQYFS DTFDHLIAAD KKEGKYDMGI LDLAPGIDEI YEESQHVFLA ENSP00000354733/1-1366 -QNALFQYFS DTFDHLIEMD KREGKYDMGI LDLAPGIEEI YEESQQVFLA bmy_06660T0/1-966 -QNTLFQYFS DTFDHLIAAD KKEGKYDMGI LDLAPGIDEI YEESQQVFLA ENSBTAP00000027693/1-1374 -QNALFQYFS DTFDHLIAAD KREGKYDMGI LDLAPGIDEI YEESQQVFLA 1201 1250 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 PGYPQDGQVV FYKISVDRGL KWEEAYARSL ELMGTHDGFY LSYKVRGNKP ENSP00000354733/1-1366 PGHPQDGQVV FYKISVDRGL KWEDAFAKSL ALTGPYDGFY LSYKVRGNKP bmy_06660T0/1-966 PGHPQDGQVV FYKISVDRGL KWEEAYARSL ELMGTHDGFY LSYKVRGNKP ENSBTAP00000027693/1-1374 PGHPQDGQVV FYKISVDRGL KWEEAYARSL ELTGTHDGFY LSYKVRGNKP 1251 1300 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 SCLLAQQNRG KLFTVYKPNI GRQSQLETLD SLCRRFHRVT AEEAREHWES ENSP00000354733/1-1366 SCLLAEQNRG QFFTVYKPNI GRQSQLEALD SLRRKFHRVT AEEAKEPWES bmy_06660T0/1-966 SCLLAQQNRG KLFTVYKPNI GRQSQLETLD SLCRRFHRVT AEEAREHWES ENSBTAP00000027693/1-1374 SCLLAQQNRG KLFTVYKPNI GRQSQLESLD SLSRRFRRVT AEEAREPWES 1301 1350 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 SYTFSLTHCS HTTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000354733/1-1366 GYALSLTHCS HSAWNRHCRL AQEGKDCLQG LRLRHHYMLC GALLRVWGRI bmy_06660T0/1-966 SYTFSLTHCS HTTWNRHCRL VQEGKDCAQG LRLRHHYMLC GALLRVWGRI ENSBTAP00000027693/1-1374 SYTFSLTHCS HTTWNRHCRL VQEGKDCAQG LRLRHHYMLC GALLRVWGRI 1351 1400 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000354733/1-1366 AAVMADVSSS SYLQIVRLKT KDRKKQVGIK IPEGCVRRVL QELRLMDADV bmy_06660T0/1-966 AAVMADVTSS SYLQIVRLKT KDKKKQVGIK IPEACVRRVL QELQLMDADV ENSBTAP00000027693/1-1374 AAVMADVTSS SYLQIVRLKT KDKKKQVGIK IPEVCVRRVL QELQLMDADV 1401 1450 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 XXXXXXXXXX XX-XXXPRPL TMISSPGEVL DLTYSPPAQA FPPPSPFAFP ENSP00000354733/1-1366 KRRQAPALGC PA-PPAPRPL ALPCGPGEVL DLTYSPPAEA FPPPPHFSFP bmy_06660T0/1-966 KRKQARARGL PALPPAPRPL ALPCGPGEVL DLTYSPPAQA FPPPSPFAFP ENSBTAP00000027693/1-1374 KRKQARTRGL LAPPSTPRPL ALPFGPGEVL DLTYSPPAQA FPAPSPFTFP 1451 1500 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014152/1-1374 APAP---GPG GLLLGV---P DAPADPAALL HQGCDINFKE VLEDMLRSLN ENSP00000354733/1-1366 APLSLDAGPG VVPLGT---P DAQADPAALA HQGCDINFKE VLEDMLRSLH bmy_06660T0/1-966 APVP---GPG GLLLGA---P DAPADPAALL HQGCDINFKE VLEDMLRSLN ENSBTAP00000027693/1-1374 ALGP---GPG GQLLGAPDTP DAPADPVALL HQGCEINFKE VLEDMLRSLN 1501 1550 BACU006525/1-1535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPRR PAAGCPRCPG ENSTTRP00000014152/1-1374 AAPPPEPPGL LGA-GGGAAG APEGSGGPER QSVIQFSPPF PNS-APG--- ENSP00000354733/1-1366 AGPPSE--GA LGE-GAGAGG A-AG-GGPER QSVIQFSPPF PGAQAPL--- bmy_06660T0/1-966 AAPPPEPPGP LGA-GRGAAG APEGSGGPER QSVIQFSPPF PNS------- ENSBTAP00000027693/1-1374 AAPPAEPPGP LGPLGAGAAG APAG-GAPER QSVIQFSPPF PNS-------