KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:40 2014 Check: 00 .. Name: ENSTTRP00000002386/1-1357 Len: 1358 Check: 9946 Weight: 1.00 Name: ENSP00000349205/1-1358 Len: 1358 Check: 4008 Weight: 1.00 Name: ENSBTAP00000027702/1-1358 Len: 1358 Check: 4232 Weight: 1.00 Name: bmy_16323T0/1-1033 Len: 1358 Check: 9945 Weight: 1.00 Name: BACU001538/1-1358 Len: 1358 Check: 1424 Weight: 1.00 // 1 50 ENSTTRP00000002386/1-1357 MGNQLAGIAP SQILSVESYF SDIHDFEYDK SLGSTRFFKV ARAKHREGLV ENSP00000349205/1-1358 MGNQLAGIAP SQILSVESYF SDIHDFEYDK SLGSTRFFKV ARAKHREGLV ENSBTAP00000027702/1-1358 MGNQLAGIAP SQILSVESYF SDIHDFEYDK SLGSTRFFKV ARAKHREGLV bmy_16323T0/1-1033 MGNQLAGIAP SQILSVESYF SDIHDFEYDK SLGSTRFFKV ARAKHREGLV BACU001538/1-1358 MGNQLAGIAP SQILSVESYF SDIHDFEYDK SLGSTRFFKV ARAKHREGLV 51 100 ENSTTRP00000002386/1-1357 VVKVFAIQDP TLPLTSYKQE LEELKIRLHS AQNCLPFQKA AEKASEKAAM ENSP00000349205/1-1358 VVKVFAIQDP TLPLTSYKQE LEELKIRLNS AQNCLPFQKA SEKASEKAAM ENSBTAP00000027702/1-1358 VVKVFAIQDP TLPLTSYKQE LEELKIRLHS AQNCLPFQKA AEKASEKAAM bmy_16323T0/1-1033 VVKVFAIQDP TLPLTSYKQE LEELKIRLHS AQNCLPFQKA AEKASEKAAM BACU001538/1-1358 VVKVFAIQDP TLPLTSYKQE LEELKIRLHS AQNCLPFQKA AEKASEKAAM 101 150 ENSTTRP00000002386/1-1357 LFRQYVRDNL YDRISTRPFL NNIEKRWIAF QILTAVDQAH KSGVRHGDIK ENSP00000349205/1-1358 LFRQYVRDNL YDRISTRPFL NNIEKRWIAF QILTAVDQAH KSGVRHGDIK ENSBTAP00000027702/1-1358 LFRQYVRDNL YDRISTRPFL NNIEKRWVAF QILTAVDQAH KSGVRHGDIK bmy_16323T0/1-1033 LFRQYVRDNL YDRISTRPFL NNIEKRWIAF QILTAVDQAH KSGVRHGDIK BACU001538/1-1358 LFRQYVRDNL YDRISTRPFL NNIEKRWIAF QILTAVDQAH KSGVRHGDIK 151 200 ENSTTRP00000002386/1-1357 TENVMVTSWN WVLLTDFASF KPTYLPEDNP ADFNYFFDTS RRRTCYIAPE ENSP00000349205/1-1358 TENVMVTSWN WVLLTDFASF KPTYLPEDNP ADFNYFFDTS RRRTCYIAPE ENSBTAP00000027702/1-1358 TENVMVTSWN WVLLTDFASF KPTYLPEDNP ADFNYFFDTS RRRTCYIAPE bmy_16323T0/1-1033 TENVMVTSWN WVLLTDFASF KPTYLPEDNP ADFNYFFDTS RRRTCYIAPE BACU001538/1-1358 TENVMVTSWN WVLLTDFASF KPTYLPEDNP ADFNYFFDTS RRRTCYIAPE 201 250 ENSTTRP00000002386/1-1357 RFVDGGLFAT ELEYMRDPST PLVDLNSNQR TRGELKRAMD IFSAGCVIAE ENSP00000349205/1-1358 RFVDGGMFAT ELEYMRDPST PLVDLNSNQR TRGELKRAMD IFSAGCVIAE ENSBTAP00000027702/1-1358 RFVDGGLFAT ELEYMRDPST PLVDLNSNQR TRGELKRAMD IFSAGCVIAE bmy_16323T0/1-1033 RFVDGGLFAT ELEYMRDPST PLVDLNSNQR TRGELKRAMD IFSAGCVIAE BACU001538/1-1358 RFVDGGLFAT ELEYMRDPST PLVDLNSNQR TRGELKRAMD IFSAGCVIAE 251 300 ENSTTRP00000002386/1-1357 LFTEGVPLFD LSQLLAYRNG QFFPEQVLNK IEDCSIRELV TQMIHREPDK ENSP00000349205/1-1358 LFTEGVPLFD LSQLLAYRNG HFFPEQVLNK IEDHSIRELV TQMIHREPDK ENSBTAP00000027702/1-1358 LFTEGVPLFD LSQLLAYRNG QFFPEQVLSK IEDRSIRELV TQMIHREPDK bmy_16323T0/1-1033 LFTEGVPLFD LSQLLAYRNG QFFPEQVLNK IEDCSIRELV TQMIHREPDK BACU001538/1-1358 LFTEGVPLFD LSQLLAYRNG QFFPEQVLNK IEDCSIRELV TQMIHREPDK 301 350 ENSTTRP00000002386/1-1357 RLEAEDYLKQ QRGNAFPEIF YTFLQPYMAQ FAKETFLSAD ERILVIRKDL ENSP00000349205/1-1358 RLEAEDYLKQ QRGNAFPEIF YTFLQPYMAQ FAKETFLSAD ERILVIRKDL ENSBTAP00000027702/1-1358 RLEAEDYLKQ QRGNAFPEIF YTFLQPYMAQ FAKETFLSAD ERILVIRKDL bmy_16323T0/1-1033 RLEAEDYLKQ QRGNAFPEIF YTFLQPYMAQ FAKETFLSAD ERILVIRKDL BACU001538/1-1358 RLEAEDYLKQ QRGNAFPEIF YTFLQPYMAQ FAKETFLSAD ERILVIRKDL 351 400 ENSTTRP00000002386/1-1357 GNIIHNLCGH DLPEKAEGEP KENGLVILVS VITSCLQTLK YCDSKLAALE ENSP00000349205/1-1358 GNIIHNLCGH DLPEKAEGEP KENGLVILVS VITSCLQTLK YCDSKLAALE ENSBTAP00000027702/1-1358 DNIIHNLCGH DLLEKADGEP KENGLVILVS VITSCLQTLK YCDSKLAALE bmy_16323T0/1-1033 GNIIHNLCGH DLPEKAEGEP KENGLVILVS VITSCLQTLK YCDSKLAALE BACU001538/1-1358 GNIIHNLCGH DLPEKAEGEP KENGLVILVS VITSCLQTLK YCDSKLAALE 401 450 ENSTTRP00000002386/1-1357 LILHLAPRLS VEILLDRITP YLLHFSSDSV PRVRAEALRT LTKVLALVKE ENSP00000349205/1-1358 LILHLAPRLS VEILLDRITP YLLHFSNDSV PRVRAEALRT LTKVLALVKE ENSBTAP00000027702/1-1358 LILHLAPRLS VEILLDRITP YLLHFSNDSV PRVRAEALRT LTKVLALVKE bmy_16323T0/1-1033 LILHLAPRLS VEILLDRITP YLLHFSSDSV PRVRAEALRT LTKVLALVKE BACU001538/1-1358 LILHLAPRLS VEILLDRITP YLLHFSSDSV PRVRAEALRT LTKVLALVKE 451 500 ENSTTRP00000002386/1-1357 VPRNDVNIYP EYILPGIAHL AQDDATIVRL AYAENIALLA ETALRFLELV ENSP00000349205/1-1358 VPRNDINIYP EYILPGIAHL AQDDATIVRL AYAENIALLA ETALRFLELV ENSBTAP00000027702/1-1358 VPRNDVNIYP EYILPGIAHL AQDDATIVRL AYAENIALLA ETALRFLELV bmy_16323T0/1-1033 VPRNDVNIYP EYILPGIAHL AQDDATIVRL AYAENIALLA ETALRFLELV BACU001538/1-1358 VPRNDVNIYP EYILPGIAHL AQDDATIVRL AYAENIALLA ETALRFLELV 501 550 ENSTTRP00000002386/1-1357 QLKNLSMEND PNSEEIDEVT HPSGNYDTEL QALHEMVQQK VVTLLSDPEN ENSP00000349205/1-1358 QLKNLNMEND PNNEEIDEVT HPNGNYDTEL QALHEMVQQK VVTLLSDPEN ENSBTAP00000027702/1-1358 QLKNLNMEND PNSEEIDEVT HPNGNYDTEL QALHEMVQQK VVTLLSDPEN bmy_16323T0/1-1033 QLKNLSMEND PNSEEIDEVT HPSGNYDTEL QALHEMVQQK VVTLLSDPEN BACU001538/1-1358 QLKNLSMEND PNSEEIDEVT HPSGNYDTEL QALHEMVQQK VVTLLSDPEN 551 600 ENSTTRP00000002386/1-1357 IVKQTLMENG ITRLCVFFGR QKANDVLLSH MITFLNDKND WHLRGAFFDS ENSP00000349205/1-1358 IVKQTLMENG ITRLCVFFGR QKANDVLLSH MITFLNDKND WHLRGAFFDS ENSBTAP00000027702/1-1358 IVKQTLMENG ITRLCVFFGR QKANDVLLSH MITFLNDKND WHLRGAFFDS bmy_16323T0/1-1033 IVKQTLMENG ITRLCVFFGR QKANDVLLSH MITFLNDKND WHLRGAFFDS BACU001538/1-1358 IVKQTLMENG ITRLCVFFGR QKANDVLLSH MITFLNDKND WHLRGAFFDS 601 650 ENSTTRP00000002386/1-1357 IVGVAAYVGW QSSSILKPLL QQGLSDAEEF VIVKALNALT CMCQLGLLQK ENSP00000349205/1-1358 IVGVAAYVGW QSSSILKPLL QQGLSDAEEF VIVKALYALT CMCQLGLLQK ENSBTAP00000027702/1-1358 IVGVAAYVGW QSSSILKPLL QQGLSDAEEF VIVKALNALT CMCQLGLLQK bmy_16323T0/1-1033 IVGVAAYVGW QSSSILKPLL QQGLSDAEEF VIVKALNALT CMCQLGLLQK BACU001538/1-1358 IVGVAAYVGW QSSSILKPLL QQGLSDAEEF VIVKALNALT CMCQLGLLQK 651 700 ENSTTRP00000002386/1-1357 PHVYEFASDI XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349205/1-1358 PHVYEFASDI APFLCHPNLW IRYGAVGFIT VVARQISTAD VYCKLMPYLD ENSBTAP00000027702/1-1358 PHVYEFASDI APFLCHPNLW IRYGAVGFIT VVAHQISTAD VYCKLMPYLD bmy_16323T0/1-1033 PHVYEFASDI APFLCHPNLW IRYGAVGFIT VVAHQISTAD VYCKLMPYLD BACU001538/1-1358 PHVYEFASDI APFLCHPNLW IRYGAVGFIT VVAHQISTAD VYCKLMPYLD 701 750 ENSTTRP00000002386/1-1357 XXXXXXXXXI XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349205/1-1358 PYITQPIIQI ERKLVLLSVL KEPVSRSIFD YALRSKDITS LFRHLHMRQK ENSBTAP00000027702/1-1358 PYITQPIIQI ERKLVLLSVL KEPVSRSIFD YALRSKDITS LFRHLHMRQK bmy_16323T0/1-1033 PYITQPIIQI ERKLVLLSVL KEPVSRSIFD YALRSKDITS LFRHLHMRQK BACU001538/1-1358 PYITQPIIQI ERKLVLLSVL KEPVSRSIFD YALRSKDITS LFRHLHMRQK 751 800 ENSTTRP00000002386/1-1357 XXXXXXXXXX XXXXXXXXXX XXXXXXXGMT EEEEDXXXXX XXXXXXXXXX ENSP00000349205/1-1358 KRNGSLPDCP PPEDPAIAQL LKKLLSQGMT EEEEDKLLAL KDFMMKSNKA ENSBTAP00000027702/1-1358 KRNGSLPDCP PPEDPAIAQL LKKLLSQGMT EEEEDKLLAL KDFMMKSNKA bmy_16323T0/1-1033 KRNGSLPDCP PPEDPAIAQL LKKLLSQGMT EEEEDKLLAL KDFMMKSNKA BACU001538/1-1358 KRNGSLPDCP PPEDPAIAQL LKKLLSQGMT EEEEDKLLAL KDFMMKSNKA 801 850 ENSTTRP00000002386/1-1357 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRKHVK ENSP00000349205/1-1358 KANIVDQSHL HDSSQKGVID LAALGITGRQ VDLVKTKQEP DDKRARKHVK ENSBTAP00000027702/1-1358 KANIVDQSHL HDSSQKGVID LAALGITGRQ VDLVKTKQEP DDKRARKHVK bmy_16323T0/1-1033 KANIVDQSHL HDSSQKGVID LAALGITGRQ VDLVKTKQEP DDKRARKHVK BACU001538/1-1358 KANIVDQSHL HDSSQKGVID LAALGITGRQ VDLVKTKQEP DDKRARKHVK 851 900 ENSTTRP00000002386/1-1357 QDSNVNEEWK SMFGSLEPPS IPQALPKGSD QEVIQAGKPP RSESSAGICA ENSP00000349205/1-1358 QDSNVNEEWK SMFGSLDPPN MPQALPKGSD QEVIQTGKPP RSESSAGICV ENSBTAP00000027702/1-1358 QDSNVNEEWK SMFGSLEPPS MQQALPKGSD QEVVPAGKPP RSESSAAVCV bmy_16323T0/1-1033 QDSNVNEEWK SMFGSLEPPS IPQALPKGSD QEVIQAGKPP RSESSAGICV BACU001538/1-1358 QDSNVNEEWK SMFGSLEPPS IPQALPKGSD QEVIQAGKPP RSESSAGICV 901 950 ENSTTRP00000002386/1-1357 PLSTSPQVPE VTNVQNRKPT IQVLSSTILP STYQIRITTC KTELQQLIQQ ENSP00000349205/1-1358 PLSTSSQVPE VTTVQNKKPV IPVLSSTILP STYQIRITTC KTELQQLIQQ ENSBTAP00000027702/1-1358 PLSTSPQIPE VTNVQNRKPT IQVLSSTILP STYQIRITTC KTELQQLIQQ bmy_16323T0/1-1033 PLSTSPQVPE ATNVQNRKPT IQVLSSTILP STYQIRITTC KTELQQLIQQ BACU001538/1-1358 PLSTSPQVPE ATNVQNRKPT IQVLSSTILP STYQIRITTC KTELQQLIQQ 951 1000 ENSTTRP00000002386/1-1357 KREQCNAERI AKQMMENAEW ESKPPPPGWR PKGLLVAHLH EHKSAVNRIR ENSP00000349205/1-1358 KREQCNAERI AKQMMENAEW ESKPPPPGWR PKGLLVAHLH EHKSAVNRIR ENSBTAP00000027702/1-1358 KREQCNAERI AKQMMENAEW ESKPPPPGWR PKGLLVAHLH EHKSAVNRIR bmy_16323T0/1-1033 KREQCNAERI AKQMMENAEW ESKPPPPGWR PKGLLVAHLH EHKSAVNRIR BACU001538/1-1358 KREQCNAERI AKQMMENAEW ESKPPPPGWR PKGLLVAHLH EHKSAVNRIR 1001 1050 ENSTTRP00000002386/1-1357 VSDEHSLFAT CSNDGTVKIW NSQKMEGKTT TTRSILTYSR IGGRVKTLTF ENSP00000349205/1-1358 VSDEHSLFAT CSNDGTVKIW NSQKMEGKTT TTRSILTYSR IGGRVKTLTF ENSBTAP00000027702/1-1358 VSDEHSLFAT CSNDGTVKIW NSQKMEGKTT TTRSILTYSR VGGCVKTLTF bmy_16323T0/1-1033 VSDEHSLFAT CSNDGTVKIW NSQKMEGKTT TTR------- ---------- BACU001538/1-1358 VSDEHSLFAT CSNDGTVKIW NSQKMEGKTT TTRSILTYSR IGGRVKTLTF 1051 1100 ENSTTRP00000002386/1-1357 CQGSQYLAIA SDNGAVQLLG IEASKLPKSP KIHPLQSRVL DQKEDGCVVD ENSP00000349205/1-1358 CQGSHYLAIA SDNGAVQLLG IEASKLPKSP KIHPLQSRIL DQKEDGCVVD ENSBTAP00000027702/1-1358 CQGSHYLAVA SDNGAVQLLA IEASKLPKSP KIHPLQSRVL DQKEDGCVVD bmy_16323T0/1-1033 ---------- ---------- ---------- ---------- ---------- BACU001538/1-1358 CQGSHYLAIA SDNGAVQLLG IEASKLPKSP KIHPLQSRVL DQKEDGCVVD 1101 1150 ENSTTRP00000002386/1-1357 MHHFNSGAQS VL-YATVNGA LVGWDLRSSS NAWTLRHDLK SGLITSFAVD ENSP00000349205/1-1358 MHHFNSGAQS VLAYATVNGS LVGWDLRSSS NAWTLKHDLK SGLITSFAVD ENSBTAP00000027702/1-1358 LHHFSSGAQS VLAYATVNGA LVGWDLRSSS NAWTLRHDLK AGLITSFAVD bmy_16323T0/1-1033 ---------- ---------- ---------- ---------- ---------- BACU001538/1-1358 MHHFNSGAQS VLAYATVNGA LVGWDLRSSS NAWTLRHDLK SGLITSFAVD 1151 1200 ENSTTRP00000002386/1-1357 IHQCWLCIGT SSGTMACWDM RFQLPISSHC HPSRARIRRL SMHPLYQSWV ENSP00000349205/1-1358 IHQCWLCIGT SSGTMACWDM RFQLPISSHC HPSRARIRRL SMHPLYQSWV ENSBTAP00000027702/1-1358 IHQCWLCIGT SSGTMACWDM RFQLPISSHC HPSRARVRRL SMHPLYQSWV bmy_16323T0/1-1033 ---------- ---------- ---------- ---------- ---------- BACU001538/1-1358 IHQCWLCIGT SSGTMACWDM RFQLPISSHC HPSRARIRRL SMHPLYQSWV 1201 1250 ENSTTRP00000002386/1-1357 IAAVQGNNEV SMWDMETGDR RFTLWASGAP PLSELQPSPH SVHGLYCSPA ENSP00000349205/1-1358 IAAVQGNNEV SMWDMETGDR RFTLWASSAP PLSELQPSPH SVHGIYCSPA ENSBTAP00000027702/1-1358 IAAVQGNNEV SMWDMETGDR RFTLWASSAP PLSELQPSSH SVHGLYCSPA bmy_16323T0/1-1033 ---------- ---------- ---------- ---------- ---------- BACU001538/1-1358 IAAVQGNNEV SMWDMETGDR RFTLWASGAP PLSELQPSPH SVHGLYCSPA 1251 1300 ENSTTRP00000002386/1-1357 DGNPILLTAG SDMKIRFWDL AYPERSYVIA GSTSSSSVSY YRKIIEGTEV ENSP00000349205/1-1358 DGNPILLTAG SDMKIRFWDL AYPERSYVVA GSTSSPSVSY YRKIIEGTEV ENSBTAP00000027702/1-1358 DGNPILLTAG SDMKIRFWDL AYPERSYIVA GSAGSPSVSY YRKVIEGTEV bmy_16323T0/1-1033 ---------- ---------- ---------- ---------- ---------- BACU001538/1-1358 DGNPILLTAG SDMKIRFWDL AYPERSYVIA GSTSSSSVSY YRKIIEGTEV 1301 1350 ENSTTRP00000002386/1-1357 VQEIQNKQKV GPSDDAPRKG PESLPVGHHD IITDVATFQT TQGFIVTASR ENSP00000349205/1-1358 VQEIQNKQKV GPSDDTPRRG PESLPVGHHD IITDVATFQT TQGFIVTASR ENSBTAP00000027702/1-1358 VQEIQNKQKV GPSDDGPRRG PESLPVGHHD IITDVATFQT TQGFIVTASR bmy_16323T0/1-1033 ---------- ---------- ---------- ---------- ---------- BACU001538/1-1358 VQEIQNKQKV GPSDDAPRKG PESLPVGHHD IITDVATFQT TQGFIVTASR 1351 1400 ENSTTRP00000002386/1-1357 DGIVKVWK ENSP00000349205/1-1358 DGIVKVWK ENSBTAP00000027702/1-1358 DGIVKVWK bmy_16323T0/1-1033 -------- BACU001538/1-1358 DGIVKVWK