KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:47 2014 Check: 00 .. Name: ENSP00000435634/1-598 Len: 618 Check: 8884 Weight: 1.00 Name: ENSBTAP00000027715/1-408 Len: 618 Check: 1035 Weight: 1.00 Name: BACU009646/1-573 Len: 618 Check: 3115 Weight: 1.00 Name: ENSTTRP00000005030/1-409 Len: 618 Check: 5541 Weight: 1.00 Name: bmy_21084T0/1-504 Len: 618 Check: 6585 Weight: 1.00 // 1 50 ENSP00000435634/1-598 MRGGGGCVLA LGGQRGFQKE RRRMASGNGL PSSSALVAKG PCALGPFPRY ENSBTAP00000027715/1-408 ---------- ---------- ---------- ---------- ---------- BACU009646/1-573 ---------- ---------- ---MASGNGL ALSSALVAKR PSALGPFPRY ENSTTRP00000005030/1-409 ---------- ---------- ---------- ---------- ---------- bmy_21084T0/1-504 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000435634/1-598 IWIHQDTPQD SLDKTCHEIW KRVQGLPEAS QPWTSMEQLS VPVVGTLRGN ENSBTAP00000027715/1-408 ---------- ---------- ---------- ---------- ---------- BACU009646/1-573 IWIHQDTPQD SLDKTCHEIW KRVQGLPEAL QPRTSKEQLS APMAGTPRDN ENSTTRP00000005030/1-409 ---------- ---------- ---------- ---------- ---------- bmy_21084T0/1-504 ---------- ---------- ---MARPAAP RERLPSQWRR KEVRRALELF 101 150 ENSP00000435634/1-598 ELSFQEEALE LSSGKDEISL LVEQEFLSLT KEHSILVEES SGELEVPGSS ENSBTAP00000027715/1-408 ---------- ---------- ---------- ---------- ---------- BACU009646/1-573 GLSFQEEPLE LTSGKDEISL LVEQEFLSLT KDHLILVTES SGELEAPSSS ENSTTRP00000005030/1-409 ---------- ---------- ---------- ---------- ---------- bmy_21084T0/1-504 SARKKSRPLE LTSGKDEISL LVEQEFLSLT KDHLILVTES SGELEAPSSS 151 200 ENSP00000435634/1-598 PEGTRELAPC ILAPPLVAGS NERPRASIIV GDKLLKQKVA MPVISSRQDC ENSBTAP00000027715/1-408 ---------- ---------- ---------- ---------- VSVVSSRPDC BACU009646/1-573 LEGPGQPAPC LLVPSLVAGS SEHPGASIIA GDKLLEPKVA ASVIGSRQDC ENSTTRP00000005030/1-409 ---------- ---------- ---------- ---------- VPVIGSRQDC bmy_21084T0/1-504 LKGPGQPAPC LLVPSLVAGS SERPGASIIA GDKLLEPKVA VSVIGSRQDC 201 250 ENSP00000435634/1-598 DSATSTVTDI LCAAEVKSSK GTEDRGRILG DSNLQVSKLL SQFPLKSTET ENSBTAP00000027715/1-408 DSATSMVTGI LRAAKVKSAR GTEDRSRSLG ASSSEISKFL AQFPLKSTET BACU009646/1-573 NSAMSTVTGT LRTAKVKSAK GTEDRGNSLG ASSSEISKLL AQFPLKSTET ENSTTRP00000005030/1-409 SSTMSTVTGT LRTAKVKSAK GTEDRGNSLG ASNSEISKLL AQFPLKSAET bmy_21084T0/1-504 NSAMSTVTGT LRTAKVKSAK GTEDRGNSLG ASNSEISKLL AQFPLKSTET 251 300 ENSP00000435634/1-598 SKVPDNKNVL DKTRVTKDFL QDNLFSGP-- ---------- ----GPKEPT ENSBTAP00000027715/1-408 SKGPDNKMVL EETRVIKDFL QSSMFSGP-- ---------- ----GPREPT BACU009646/1-573 SKAPESKTVL EENRVIKDFL QNSMFNGPGP GEPAEPGPFL XXXXGPGEPA ENSTTRP00000005030/1-409 SKAPDNKTVL EESTAIKDFL QSSMFSGP-- ---------- ----GPGEPA bmy_21084T0/1-504 SKAPDSKTVL EETKVIKDFL QNSMFNGP-- ---------- ----GPGEPA 301 350 ENSP00000435634/1-598 GLSPFLLLPP RPPPARPDKL ---PELPAQK RQLPVFAKIC SKPKADPAVE ENSBTAP00000027715/1-408 GLGPFLLLPP PPPPVLPNKL ---PELPAQK KQLPVFAKIC SKPEADPIME BACU009646/1-573 EPGPFLLLPP PPPPVPPDKL DKPPKLPAQR KQLPVFAKIC SKPEADPAME ENSTTRP00000005030/1-409 ELGPFLLPTP LPPPAPPDKL DKPPRLPAQR KQLPVFAKIC SKPEADPAME bmy_21084T0/1-504 ELGPFLLLPP PPPPAPLDKL DKPPKLPAQR KQLPVFAKIC SKPEADPAVE 351 400 ENSP00000435634/1-598 RHHLMEWSPG TKEPKKGQGS LFLSQWPQSQ KDACGEEGCC DAVGTASLTL ENSBTAP00000027715/1-408 GYQLIERNPN AKELTRGRES LFLSQWSPSQ KDTCGEEGGS DPMGSMTMAL BACU009646/1-573 GHTLMEWNPG AKQLTKGQES LFLSQWSQRR QETCGNEGGS DPMGSMSMAL ENSTTRP00000005030/1-409 GHKLMERNPG AKELTKGQES LFLSQWSQRR KDTCGKEGGS DPMGSTSVAL bmy_21084T0/1-504 GHKLMERNPG AKQLTKGQET LFLSQWSQRR KETCGKEGGS DPMDSMSMAL 401 450 ENSP00000435634/1-598 PPKKPTCPAE KNLLYEFLGA TKNPSGQPRL RNKVEVDGPE LKFNAPVTVA ENSBTAP00000027715/1-408 PAKKPAWQAK KNLLYEFLGA TKNPSGQLKL RGKVEVDRLE LKLNPPVTGA BACU009646/1-573 PAKKPAWPAK KNLLCEFLGA TKNPSRQLEL HSKVEVDGLE LKLNPPETGA ENSTTRP00000005030/1-409 PAKKPAWPAK KNLLCEFLGA TKNPSRHLKL RSKVEVDGLE LKLNPPVTGA bmy_21084T0/1-504 PAKKPAWPAK KNLLCEFLGA TKNPSRQLKL RSKVEVDGLE LKLNPPVTGA 451 500 ENSP00000435634/1-598 DKNNPKYTGN VFTPHFPTAM TSATLNQPLW LNLNYPPPPV FTNHSTFLQY ENSBTAP00000027715/1-408 DKNNLKYTGN VFTPRFATAL TSATLNQPLW LNLNYAPPPV FTNPSTFPQY BACU009646/1-573 DKNNLKYTGN VFTPRFATTS TSATVNQPLW LNMNYPLLPV FTNPSTFPQY ENSTTRP00000005030/1-409 DKNNLEYTGS VFTPCFATTL TSATLNQPLW LNLNYPLLPV FTNPSTFPQY bmy_21084T0/1-504 DKNNLKYTGN VFTPRFATTL TSATVNQPLW VNLNYPLLPV FTNPSTFPQY 501 550 ENSP00000435634/1-598 QGLYPQQAAR MPYQQALHPQ LGCYSQQVMP Y-NPQQMGQQ IFRSSYTPLL ENSBTAP00000027715/1-408 QGLYSQRAAR MPYQQTLHPQ LGCYSRQVTP Y-NPQQMGQQ IFRSSYTPLM BACU009646/1-573 QGLYPQRAAR MPYQQTLHPQ LGCYSRQVTP Y-NPQQMGQQ IFRSSX---- ENSTTRP00000005030/1-409 QGLY-QQAAR MPYQQT-QPQ LGCYSRQVMP YNNPQQTGQQ SFHSSYNPLL bmy_21084T0/1-504 QGLYPQRAAR MPYQQTLHPQ LGCYSRQVTP Y-NPQQMGQQ IFRSSYTPLL 551 600 ENSP00000435634/1-598 SYIPFVQPNY PYPQRTPPKM SANPRDPPLM AGDGPQYLFP QGYGFGSTSG ENSBTAP00000027715/1-408 SYIPFVQPNY PYPQRTPQKL ASNPRDPSPM AGDGPQYLFP PAYGFSSTSG BACU009646/1-573 SYVPFVQSNY PYPQRTAQKL ARNPRDPPPM AGDGLQYPFP QAYGLACDHP ENSTTRP00000005030/1-409 SYIPFVQSSY PYPQRTPQKL ARNPRDPSPM AGDGLQYPFP -AYGFGSTSG bmy_21084T0/1-504 SYIPFVQSNY PYPQRTPQKL ARNPRDPSAM AGDGLQYPFP QAYG------ 601 650 ENSP00000435634/1-598 GPLMHSPYFS SSGNGINF ENSBTAP00000027715/1-408 GPLMNSPYFS SSGNGINF BACU009646/1-573 E--------- -------- ENSTTRP00000005030/1-409 GPLMNSPYFP SSGNGIHF bmy_21084T0/1-504 ---------- --------