KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:48 2014 Check: 00 .. Name: ENSP00000376702/1-251 Len: 273 Check: 3904 Weight: 1.00 Name: ENSBTAP00000027732/1-273 Len: 273 Check: 904 Weight: 1.00 Name: bmy_17569T0/1-160 Len: 273 Check: 9144 Weight: 1.00 Name: BACU006138/1-206 Len: 273 Check: 9752 Weight: 1.00 Name: ENSTTRP00000001571/1-159 Len: 273 Check: 5019 Weight: 1.00 // 1 50 ENSP00000376702/1-251 ---------- ---------- -MEGGAAAA- TPTALPYYVA FSQLLGLTLV ENSBTAP00000027732/1-273 MWRTLTCTLT AGGSAASSRL SMEGPASPAR APGALPYYVA FSQLLGLIVV bmy_17569T0/1-160 ---------- ---------- -MESPARPAP APAALLYYVA FSQLLGLAVV BACU006138/1-206 ---------- ---------- -MESPARPAP APAALLYYVA FSQLLGLAVV ENSTTRP00000001571/1-159 ---------- --------IE SMDSPARPAP APAALLYYVA FSQLLGLAVV 51 100 ENSP00000376702/1-251 AMTGAWLGLY RGGIAWESDL QFNAHPLCMV IGLIFLQGNA LLVYRVFRNE ENSBTAP00000027732/1-273 AMTGAWLGMY RGGIAWESAL QFNVHPLCMI IGLVFLQGDA LLVYRVFRNE bmy_17569T0/1-160 AMTGTWLGVY RGGIAWESAL QFNVHPLCMI IGLVFLQGDA LLVYRVFRNE BACU006138/1-206 AMTGTWLGVY RGGIAWESAL QFNVHPLCMI IGLVFLQGDA LLVYRVFRNE ENSTTRP00000001571/1-159 AMTGTWLGVY RGGIAWESAL QFNVHPLCMV IGLVFLQGDA LLVYRVFRNE 101 150 ENSP00000376702/1-251 AKRTTKVLHG LLHIFALVIA LVGLVAVFDY HRKKGYADLY SLHSWCGILV ENSBTAP00000027732/1-273 AKRTTKVLHG LLHVFAFVIA LVGLVAVFEH HRKKGYADLY SLHSWCGILV bmy_17569T0/1-160 AKRTTKILHG LLHVFAFVIA LVGLVAVFDY HRKEGYADLY SLHSWCGILV BACU006138/1-206 AKRTTKILHG LLHVFAFVIA LVGLVAVFDY HRKEGYADLY SLHSWCGILV ENSTTRP00000001571/1-159 AKRTTKVLHG LLHVFAFIIA LVGLVAVFDY HRKEGYADLY SLHSWCGILV 151 200 ENSP00000376702/1-251 FVLYFVQWLV GFSFFLFPGA SFSLRSRYRP QHIFFGATIF LLSVGTALLG ENSBTAP00000027732/1-273 FALFFAQWLV GFSFFLFPGA SFSLRSRYRP QHVFFGAAIF LLSVATALLG bmy_17569T0/1-160 FVLFFVQ--- --------GD VNRVSGTYR- ---------- ---------- BACU006138/1-206 FVLFFVQWLV GFSFFLFPGA SFSLRSRYRP QHVFLGGAIF LLSVGTALLG ENSTTRP00000001571/1-159 FVLFFVQWLM GFSFFLFPGA SFSLRSR--- ---------- ---------- 201 250 ENSP00000376702/1-251 LKEALLFNLG GKYSAFEPEG VLANVLGLLL ACFGGAVLYI LTRADWKRPS ENSBTAP00000027732/1-273 LKEALLFELG TKYSMFEPEG VLANVLGLLL ATFATVILYI LTRADWKRPL bmy_17569T0/1-160 ------FHVK N----FPPPE ARH------- ---------- ---------- BACU006138/1-206 LKEALLFELG K----LGPSQ NRIN------ ---------- ---------- ENSTTRP00000001571/1-159 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000376702/1-251 QAEEQALSMD FKTLTEGDSP GSQ ENSBTAP00000027732/1-273 QAEEQALSMD FKTLTEGDSP SSQ bmy_17569T0/1-160 ---------- ---------- --- BACU006138/1-206 ---------- ------PPNP MSV ENSTTRP00000001571/1-159 ---------- ---------- ---