KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:50 2014 Check: 00 .. Name: ENSTTRP00000011110/1-855 Len: 940 Check: 7757 Weight: 1.00 Name: ENSP00000358262/1-897 Len: 940 Check: 1220 Weight: 1.00 Name: ENSBTAP00000027762/1-896 Len: 940 Check: 7944 Weight: 1.00 Name: bmy_22302T0/1-656 Len: 940 Check: 6078 Weight: 1.00 Name: BACU009438/1-873 Len: 940 Check: 4041 Weight: 1.00 // 1 50 ENSTTRP00000011110/1-855 ---------- ---------- ---------- ---------- -----IHLRP ENSP00000358262/1-897 MERAGATSRG GQAPGFLLRL HTEGRAEA-- ARVQEQDLRQ WGLTGIHLRS ENSBTAP00000027762/1-896 MERVGAATPE GDMPGFLLAL QSKSRAEAPR ARVQEQDLRQ WGLTGIHLRP bmy_22302T0/1-656 ---------- -DLLLFL--- ---------- ---------- --FLGIHLRP BACU009438/1-873 MEREGNATRE GDMPGFLQSL QSESRVEAAR ARVQEQELRQ WGLTGIHLRP 51 100 ENSTTRP00000011110/1-855 YQLEGVNWLA QRFHCQNGCI LGDEMGLGKT CQTIAFFTYL AGRLNDEGPF ENSP00000358262/1-897 YQLEGVNWLA QRFHCQNGCI LGDEMGLGKT CQTIALFIYL AGRLNDEGPF ENSBTAP00000027762/1-896 YQLQGVNWLA QCFHCQNGCI LGDEMGLGKT CQTIALFIYL AGRLNDEGPF bmy_22302T0/1-656 YQLEGVNWLA QRFHCQNGCI LGDEMGLGKT CQTIALFIYL AGRLNDEGPF BACU009438/1-873 YQLEGVNWLA QRFHCQNGCI LGDEMGLGKT CQTIALFIYL AGRLNDEGPF 101 150 ENSTTRP00000011110/1-855 LILCPLSVLS NWKEEIER-- ---------- --FAPDLSCV TYSGDKEERA ENSP00000358262/1-897 LILCPLSVLS NWKEEMQR-- ---------- --FAPGLSCV TYAGDKEERA ENSBTAP00000027762/1-896 LILCPLSVLS NWKEEMER-- ---------- --FAPGLSCV TYAGDKDKRA bmy_22302T0/1-656 LILCPLSVLS NWKEEMERCY VKYDKTTYCP KQFAPGLSCV TYSGDKEERA BACU009438/1-873 LILCPLSVLS NWKEEME--- ---------- ---------- ---------- 151 200 ENSTTRP00000011110/1-855 HLQQDLRKES HFHVLLTTYE ICLKDALFLK SFSWSVLVVD EAHRLKNQSS ENSP00000358262/1-897 CLQQDLKQES RFHVLLTTYE ICLKDASFLK SFPWSVLVVD EAHRLKNQSS ENSBTAP00000027762/1-896 CLQQDLKQES RFHVLLTTYE ICLKDASFLK SFPWSVLVVD EAHRLKNQSS bmy_22302T0/1-656 HQQQDLRQES RFHVLLTTYE VCLKDASFLK SFPWSVLVVD EAHRLKNQSS BACU009438/1-873 ---------- ---------- ---------- SFPWSVLVVD EAHRLKNQSS 201 250 ENSTTRP00000011110/1-855 LLHKTLSEFS VVFSLLLTGT PIQNSLRELY SLLSFVEPDL FSKEQVDDFI ENSP00000358262/1-897 LLHKTLSEFS VVFSLLLTGT PIQNSLQELY SLLSFVEPDL FSKEEVGDFI ENSBTAP00000027762/1-896 LLHKTLSEFS VVFSLLLTGT PIQNSLQELY SLLSFVEPDL FSKEQVEDFV bmy_22302T0/1-656 LLHKTLSEFS VVFNLLLTGT PIQNSLRELY SLLSFVEPDL FSKEQVEDFI BACU009438/1-873 LLHKTLSEFS VVFNLLLTGT PIQNSLRELY SLLSFVEPDL FSKEQVEDFI 251 300 ENSTTRP00000011110/1-855 QRYQDIEKES ESASELYKLL QPFLLRRVKA EVATELPKKT EVVIYHGMSA ENSP00000358262/1-897 QRYQDIEKES ESASELHKLL QPFLLRRVKA EVATELPKKT EVVIYHGMSA ENSBTAP00000027762/1-896 QRYQDIEKES ESASELYKLL QPFLLRRVKA EVATELPRKT EVVIYHGMSA bmy_22302T0/1-656 QRYQDIEKES ES-------- ---------- ---------- ---------- BACU009438/1-873 QRYHDIEKES ESASELYKLL QPFLLRRVKA EVATELPKKT EVVIYHGMSA 301 350 ENSTTRP00000011110/1-855 LQKKYYKAIL MKDLDAFENE MAKKVKLQNV LSQLRKCVDH PYLFDXXXXX ENSP00000358262/1-897 LQKKYYKAIL MKDLDAFENE TAKKVKLQNI LSQLRKCVDH PYLFDGVEPE ENSBTAP00000027762/1-896 LQKKYYKAIL MKDLDAFENE MAKKVKLQNV LSQLRKCVDH PYLFDGVEPE bmy_22302T0/1-656 ---------- ---------- ---------- ---------- -----GVEPE BACU009438/1-873 LQKKYYKAIL MKDLDAFENE MVKKVKLQNV LSQLRKCVDH PYLFDGVEPE 351 400 ENSTTRP00000011110/1-855 XXXXXXXXXX XXXXXXXXXX XXX----XXX XXGHRVLLFS QMTQMLDILQ ENSP00000358262/1-897 PFEVGDHLTE ASGKLHLLDK LLA----FLY SGGHRVLLFS QMTQMLDILQ ENSBTAP00000027762/1-896 PFEIGDHLIE ASGKLHLLDK LLA----FLY SKGHRVLLFS QMTQMLDILQ bmy_22302T0/1-656 PFEIGDHLIE ASGKLHLLDK LLA----FLY SRGHRVLLFS QMTQMLDILQ BACU009438/1-873 PFEIGDHLIE ASGKLHLLDK LLAFQYXFLY SKGHRVLLFS QMTQMLDILQ 401 450 ENSTTRP00000011110/1-855 DYMDYRGYSY ERVDGSVRGE ERHLAIKNFG QQPIFIFLLS TRAGGVGMNL ENSP00000358262/1-897 DYMDYRGYSY ERVDGSVRGE ERHLAIKNFG QQPIFVFLLS TRAGGVGMNL ENSBTAP00000027762/1-896 DYLDYRGYSY ERVDGSVRGE ERHLAIKNFG QQPIFTF-LS TRAGGVGMNL bmy_22302T0/1-656 DYMDYRGYSY ERVDGSVRGE ERHLAIKNFG QQPIFIFLLS TRAG------ BACU009438/1-873 DYMDYRGYSY ERVDGSVRGE ERHLAIKNFG QQPIFIFLLS TRAGGVGMNL 451 500 ENSTTRP00000011110/1-855 TAADTVIFVD SDFNPQNDLQ AAARAHRIGQ NKSVKVIRLI GRDTVEEIVC ENSP00000358262/1-897 TAADTVIFVD SDFNPQNDLQ AAARAHRIGQ NKSVKVIRLI GRDTVEEIVY ENSBTAP00000027762/1-896 TAADTVIFFD SDFNPQNDLQ AAARAHRIGQ NKSVKVIRLI GRDTVEEIVY bmy_22302T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU009438/1-873 TAADTVIFVD SDFNPQNDLQ AAARAHRIGQ NKSVKVIRLI GQDTVEEIVC 501 550 ENSTTRP00000011110/1-855 RKAASKLQLT NTIIEGGHFT LGAQKPAAHA DLQLSEILKF GLDKLLSSEG ENSP00000358262/1-897 RKAASKLQLT NMIIEGGHFT LGAQKPAADA DLQLSEILKF GLDKLLASEG ENSBTAP00000027762/1-896 RKAASKLQLT NTIIEGGHFT LGAQKPAADA DLQLSEILKF GLDKLLSSEG bmy_22302T0/1-656 ENAETKISFA ---------- ---------- --KLSEILKF GLDKLLSSEG BACU009438/1-873 RKAASKLQLT STITEGGHFT LGAQKPAADA DLQLSEILKF GLDKLLSSEG 551 600 ENSTTRP00000011110/1-855 STMDEIDLES ILGETKDGQW ISGALPTAEE RSREQEEGKN HMYLFEGKDY ENSP00000358262/1-897 STMDEIDLES ILGETKDGQW VSDALPAAEG GSRDQEEGKN HMYLFEGKDY ENSBTAP00000027762/1-896 STMHEIDLKS ILGETEDGHW VSDALPTAEE GSREPEEGKN HMYLFEGKDY bmy_22302T0/1-656 STMDEIDLES ILGETKDGQW ISGALPTAEE RSREQEEGKN HMYLFEGKDY BACU009438/1-873 STMDELDLES ILGETKDGQW ISGALPTAEE RSREQEEGKN HMYLFEGKDY 601 650 ENSTTRP00000011110/1-855 SKEPSKEDRK SFEHLVNLQK TLLEKTSQEG RLLRKKGSVL IPGLVEGSTK ENSP00000358262/1-897 SKEPSKEDRK SFEQLVNLQK TLLEKASQEG RSLRNKGSVL IPGLVEGSTK ENSBTAP00000027762/1-896 SKEPSKEDRE SFEQLVNLQK TLLEKTSQEG RLLRNKGSVP IPGLVEGSTK bmy_22302T0/1-656 SKEPSKEDRK SFEQLVNLEK TLLEKTSQEG RLLRNKGSVL IPGLVEGSTK BACU009438/1-873 SKEPSKEDRK SFEQLVNLEK TLLEKTSQEG RLLRNKGSVL IPGLVEGSTK 651 700 ENSTTRP00000011110/1-855 RKRILSPEEL EDRRKKRQEA AAKRKKLLEE EKRRKEEAEH KKKMAWWESN ENSP00000358262/1-897 RKRVLSPEEL EDRQKKRQEA AAKRRRLIEE KKRQKEEAEH KKKMAWWESN ENSBTAP00000027762/1-896 RKRILSPEEL EDRRKRRQEA AAKRKRLLEE KRKKKEEAEH KKKMAWWESN bmy_22302T0/1-656 RKRILSPEEL EDRRKKRQEA AAKRKKLLEE KKRKKEEAEH KKKMAWWESN BACU009438/1-873 RKRILSPEEL EDRRKKRQEA AAKRKKLLEE EKRKKEEAEH KKKMAWWESN 701 750 ENSTTRP00000011110/1-855 DYQSFCLPSD ESEPEDLEDW EDERSAQLDY EDPDSTSIKY VSGDVTHPQA ENSP00000358262/1-897 NYQSFCLPSE ESEPEDLENG E-ESSAELDY QDPDATSLKY VSGDVTHPQA ENSBTAP00000027762/1-896 NYQSFCLPSE ESEPED---G EDESSAQLEY EDPDSTSIRY VSGDVTHPQA bmy_22302T0/1-656 DYQSFCLPSE ESEPEDLEDW EDERSAQLDY QDPDSTSIKY VSGDVTHPQA BACU009438/1-873 DYQSFCLPSE ESEPEDLEDW EDERSAQLDY EDPDSTSIKY VSGDVTHPQA 751 800 ENSTTRP00000011110/1-855 GAEDAVIVHC VDDSGRWGRG GLFTALEKRS AEPRKIYELA GRMKDLSLGG ENSP00000358262/1-897 GAEDALIVHC VDDSGHWGRG GLFTALEKRS AEPRKIYELA GKMKDLSLGG ENSBTAP00000027762/1-896 GAEDAVIVHC VDDSGRWGRG GLFTALETRS AEPRKRYELA GKMKDLSLGG bmy_22302T0/1-656 GAEDAVIVHC VDDSGRWGRG GLFTALEKRS AEPRKIYELA GKM------- BACU009438/1-873 GAEDAVIVHC VDDSGRWGRG GLFTALEKRS AEPRKIYELA GKMKDLSLGG 801 850 ENSTTRP00000011110/1-855 VLLFPIDDKE SRNKGQDLLA LIVAQHRDRA NVLSGIKMAA LDEGLKKIFL ENSP00000358262/1-897 VLLFPVDDKE SRNKGQDLLA LIVAQHRDRS NVLSGIKMAA LEEGLKKIFL ENSBTAP00000027762/1-896 VLLFPIDDKE SRNEGQDLLA LIVAQHRDRA NVLSGIKMAA LEEALKKIFL bmy_22302T0/1-656 ---------- ---------- ---------- ---------- ---------- BACU009438/1-873 VLLFPIDDKE SRNKGQDLLA LIVAQHRDRA NVLSGIKMAA LDEGLKKIFL 851 900 ENSTTRP00000011110/1-855 AAKKKKASVH LPRIGHATEG FNWYGTERLI RKHLASRGIP TYIYYFPRSK ENSP00000358262/1-897 AAKKKKASVH LPRIGHATKG FNWYGTERLI RKHLAARGIP TYIYYFPRSK ENSBTAP00000027762/1-896 AAKKRKASVH LPRIGHATKG FNWYGTERLI RKHLASRGIP TYIYYFPRSK bmy_22302T0/1-656 -----KASVH LPRIGHATKG FNWYGTERLI RKHLASRGIP TYMYPF---- BACU009438/1-873 AAKKKKASVH LPRIGHATKG FNWYGTERLI RKHLASRGIP TYMYPF---- 901 950 ENSTTRP00000011110/1-855 AAILHPQASS SSLGQ----- ---------- PVP------- ENSP00000358262/1-897 SAVLHAQSSS SSSRQ----- ---------- LVP------- ENSBTAP00000027762/1-896 AAILHLQASS SSSGQ----- ---------- LVS------- bmy_22302T0/1-656 --VILMVCTS SSKGE----- ---------- NVLHFSGVII BACU009438/1-873 VILMHSELEE HTLAQRPIKC DFRETRGSLP LPPNQFSFKK