KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:33:51 2014 Check: 00 .. Name: ENSBTAP00000027774/1-513 Len: 513 Check: 9529 Weight: 1.00 Name: ENSTTRP00000013485/1-513 Len: 513 Check: 617 Weight: 1.00 Name: bmy_08957T0/1-274 Len: 513 Check: 2596 Weight: 1.00 Name: BACU014373/1-346 Len: 513 Check: 7179 Weight: 1.00 // 1 50 ENSBTAP00000027774/1-513 MYTEEPQNEH LEDENVQSST TPEILKATSA NEHEETKETI LPETEETKPQ ENSTTRP00000013485/1-513 MYATDPKNEH LEDKNIQSST TPQILKASDT NEHEETKETV LSKTEETKPQ bmy_08957T0/1-274 ---------- ---------- ---------- ---------- ---------- BACU014373/1-346 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000027774/1-513 MEKKGSCPPQ GTLNKAITNG AILFMIWCVV WAFSGPEVLP NGSLFGLLVI ENSTTRP00000013485/1-513 MEKKCSCPPQ GTLNETITNG AILFMVWCVT WSFSGPEVLP GGSLFGLLII bmy_08957T0/1-274 ---------- ---------- --MSSLLTCS RGRNGVETTS DW-------- BACU014373/1-346 ---------- ---------- ----MIWCVT WSFSGPEVLP DGSLFGLLII 101 150 ENSBTAP00000027774/1-513 FYCALIGGKL LEVIRLPSVP EIPPLLGMLL AGFAVRNVPF LSDITYISNE ENSTTRP00000013485/1-513 FYGAVIGGKL LENIRIPSVP QLPPVLGMLL AGFTVRNVPF LSDHVCISST bmy_08957T0/1-274 ---------- ------P--- ---------- ---------- ---------- BACU014373/1-346 FYGALIGGKL LEIIRIPSVP QLPPLL---- ---------- ---------- 151 200 ENSBTAP00000027774/1-513 LSSTLRNTAL TIILVRAGLG LDPQALKNLK RVCLRLSMGP CLMEACSTAV ENSTTRP00000013485/1-513 MSSTLRNTAL TIILLQAGLG LDPQALKHLK GVCLRLSMGP CLIEACSTAV bmy_08957T0/1-274 ---------- ---------- ---------- ---------- ---------- BACU014373/1-346 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000027774/1-513 ISHFLMNFPW QWGFLLGFVV GAVSPAVVVP SMLHLQEKGY GIEKGIPTLL ENSTTRP00000013485/1-513 VSHFLMNFPW QWGFLLGFVV SAVSPAVVVP SMLRLQEKGY GFEKGIPTLL bmy_08957T0/1-274 -------FLW RYS---NFVV GAVSPAVVVP SMLRLQEKGY GVEKGIPTLL BACU014373/1-346 ---------- ---------V GAVSPAVVVP SMLHLQEKGY GVEKGIPTLL 251 300 ENSBTAP00000027774/1-513 IAASSLDDIL AITGFNACFS IVFSSGNISS NVLSSLRDVI LGVLLGIVLG ENSTTRP00000013485/1-513 IAASSLDDIV AISGFNTCLS IVFSSXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08957T0/1-274 IAASSLDDIV AITGFNTCLS IVFSSGGVLS NLMSSFRDVL VGVLVGIVLG BACU014373/1-346 IAASSLDDIV AITGFNTCLS IVFSSGGVLS NLMSSFRDVL VGVLVGIVLG 301 350 ENSBTAP00000027774/1-513 MFARHFPGSD QGKLEVKRAF LILSMCISAV LGSHRFGMNT AGGLCALVLS ENSTTRP00000013485/1-513 XXXXXXXXXX XGELAVKRAF LILSMCVSAV LGSHRIGLHT AGGLCTVVLS bmy_08957T0/1-274 MFTRYFPSRD Q--------- ---------- ---------- ---------- BACU014373/1-346 MFTRYFPSRD QGKLAVKRAF LILSMCVSAV LGSHRIGLHA AGGLCTLVLS 351 400 ENSBTAP00000027774/1-513 FTAGTGWSKE KVRVQKIIGT AWDIFQPLLF GLVGAEVSVL SLKSNAIGLS ENSTTRP00000013485/1-513 FIAGTSWSKE KIRVQKIIQT AWNIFQPLLF GLVGAEVSVT SLKSNAIGIC bmy_08957T0/1-274 ---------- -IRVQKIIGT AWNIFQPLLF GLVGAEVSVT SLKSNAIGIC BACU014373/1-346 FVAGTSWSKE KIRVQKIIGT AWNIFQPLLF GLVGAEVSVT SLKSNAIGIC 401 450 ENSBTAP00000027774/1-513 VGTMSLALLI RISFTFVLMS CAGFNFKEKI FIALSWMPKA TVQAVLGPLA ENSTTRP00000013485/1-513 VVTLSLALLV RISFTFVLMS FAGFNFKEKI FIALSWMPKA TVQAVLGPLA bmy_08957T0/1-274 VATLSLALLV RISFTFVLMS SAGFNFKEKI FIALSWMPKA TVQAVLGPLA BACU014373/1-346 VATLSLALLV RISFTFVLMS FAGFNFKEKI FIALSWMPKA TVQAVLGPLA 451 500 ENSBTAP00000027774/1-513 LEKARMSAPH LESYSEDVMT VAFLAILITA PNGALIIGIL GPKVLTRYDK ENSTTRP00000013485/1-513 LERARISAPH LEPYSKDVMT IAFLAILIAA PNGALIIGIL GPKVLTRHDP bmy_08957T0/1-274 LERARISAPH LEPYSKDVMT IAFLAILITA PNGALIIGIL GPKVLTRHDP BACU014373/1-346 LERARISAPH LEPYSKDVMT IAFLAILITA PNGALIIGIL GPKVLTRHDP 501 550 ENSBTAP00000027774/1-513 SKVKMELSGL ELH ENSTTRP00000013485/1-513 NKMKVELAGL ELH bmy_08957T0/1-274 NKMKVELAGL ELH BACU014373/1-346 NKMKVELAGL ELH