KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:53 2014 Check: 00 .. Name: ENSTTRP00000002929/1-1103 Len: 1171 Check: 7808 Weight: 1.00 Name: ENSP00000352121/1-1102 Len: 1171 Check: 8949 Weight: 1.00 Name: ENSBTAP00000027780/1-885 Len: 1171 Check: 1683 Weight: 1.00 Name: bmy_12518T0/1-1006 Len: 1171 Check: 9961 Weight: 1.00 Name: BACU008788/1-1145 Len: 1171 Check: 9225 Weight: 1.00 // 1 50 ENSTTRP00000002929/1-1103 MELENHEQHV VLREDNRRRR RRMKPRSAAA SLSSMELIPI EFVLPTSQRN ENSP00000352121/1-1102 MELENYKQPV VLREDNCRRR RRMKPRSAAA SLSSMELIPI EFVLPTSQRK ENSBTAP00000027780/1-885 MELENHEQPV VLREDNCRRR RRMKPRSTAA SMSSMELIPI EFVLPTSQRN bmy_12518T0/1-1006 MELESHEQHV VLREDNRRRR RRMKPRSAAA SLSSMELIPI EFVLPTSQRN BACU008788/1-1145 MELESHEQHV VLREDNRRRR WRMKPRSAAA SLSSMELIPI EFVLPTSQRN 51 100 ENSTTRP00000002929/1-1103 TKTPETALLH VAGHGNVEQM KAQVWLRALE TSVAADFYHR LSPDHFLLLY ENSP00000352121/1-1102 CKSPETALLH VAGHGNVEQM KAQVWLRALE TSVAADFYHR LGPHHFLLLY ENSBTAP00000027780/1-885 TKTPETALLH VAGHGNVEQM KAQVWLRVLE TSVAADFYHR LGPDHFLLLY bmy_12518T0/1-1006 TKTPETALLH VAGHGNVEQM KAQVWLRALE TSVAADFYHR LSPDHFLLLY BACU008788/1-1145 TKTPETALLH VAGHGNVEQM KAQVWLRALE TSVAADFYHR LSPDHFLLLY 101 150 ENSTTRP00000002929/1-1103 QKKGQWYEIY DKYQVVQTLD CLRYWKVLHR SPGQIHVVQR LAPSEETLAF ENSP00000352121/1-1102 QKKGQWYEIY DKYQVVQTLD CLRYWKATHR SPGQIHLVQR HPPSEESQAF ENSBTAP00000027780/1-885 QKKGQWYEIY DKYQVVQTLD CLHYWKVLHR SPGQIHLVQR HSPSEETLAF bmy_12518T0/1-1006 QKKGQWYEIY DKYQVVQTLD CLRYWKVLHR SPGQIHVVQR LARSEETLAF BACU008788/1-1145 QKKGQWYEIY DKYQVVQTLD CLRYWKVLHR SPGQIHVVQR LAPSEETLAF 151 200 ENSTTRP00000002929/1-1103 QRQLTALIGY DVTDVSNVHD DELEFTVHRL VSPRMAEVAG RDTKLYSAMH ENSP00000352121/1-1102 QRQLTALIGY DVTDVSNVHD DELEFTRRGL VTPRMAEVAS RDPKLY-AMH ENSBTAP00000027780/1-885 QRQLTALIGY DVTDVSNVHD DELEFTRRRL VTPRMAEVAG RDPKLY-AMH bmy_12518T0/1-1006 QRQLTALIGY DVTDVSNVHD DELEFTRRRL VTPRMAEVAG RDPKLY-AMH BACU008788/1-1145 QRQLTALIGY DVTDVSNVHD DELEFTRRRL VTPRMAEVAG RDPKLY-AMH 201 250 ENSTTRP00000002929/1-1103 PWVTSKPLPE YLLKKITNNY IFIVIHRSTT SQTIKVSADD TPGTILQSFF ENSP00000352121/1-1102 PWVTSKPLPE YLWKKIANNC IFIVIHRSTT SQTIKVSPDD TPGAILQSFF ENSBTAP00000027780/1-885 PWVTSKPLPE YLLKKITNNC IFIIIHRSTT SQTIKVSADD TPGTILQSFF bmy_12518T0/1-1006 PWVTSKPLPE YLLKKITNNY IFIVIHRSTT SQTIKVSADD TPGAILQSFF BACU008788/1-1145 PWVTSKPLPE YLLKKITNNY IFIVIHRSTT SQTIKVSADD TPGTILQSFF 251 300 ENSTTRP00000002929/1-1103 TKMAKKKSLM DIPESQNEQD FVLRVCGRDE YLVGETPIRN FQWVRQCLKN ENSP00000352121/1-1102 TKMAKKKSLM DIPESQSEQD FVLRVCGRDE YLVGETPIKN FQWVRHCLKN ENSBTAP00000027780/1-885 TKMAKKKSLM DIPESQNEQD FVLRVCGRDE YLVGETPIKN FQWVRQCLKN bmy_12518T0/1-1006 TKMAKKKSLM DIPESQNEQD FVLRVCGRDE YLVGETPIKN FQWVRQCLKN BACU008788/1-1145 TKMAKKKSLM DIPESQNERD FVLRVCGRDE YLVGETPIKN FQWVRQCLKN 301 350 ENSTTRP00000002929/1-1103 GEEIHLVLDT PPDPALDEVR KEEWPLVDDC TGVTGYHEQL TIHGKDHESV ENSP00000352121/1-1102 GEEIHVVLDT PPDPALDEVR KEEWPLVDDC TGVTGYHEQL TIHGKDHESV ENSBTAP00000027780/1-885 GEEIHLVLDT PPDPALDEVR KEEWPLVDDC TGVTGYHEQL TIHGKDHESV bmy_12518T0/1-1006 GEEIHLVLDA PPDPALDEVR KEEWPLVDDC TGVTGYHEQL TIHGKDHESV BACU008788/1-1145 GEEIHLVLDT PPDPALDEVR KEEWPLVDDC TGVTGYHEQL TIHGKDHESV 351 400 ENSTTRP00000002929/1-1103 FTVSLWDCDR KFRVKIRGID IPVLPRNADL TVFVEANIQY GQQVLCQRRT ENSP00000352121/1-1102 FTVSLWDCDR KFRVKIRGID IPVLPRNTDL TVFVEANIQH GQQVLCQRRT ENSBTAP00000027780/1-885 FTVSLWDCDR KFRVKIRGID IPVLPRNADL TVFVEANIQY GQQVLCQRRT bmy_12518T0/1-1006 FTVSLWDCDR KFRVKIRGID IPVLPRNADL TVFVEANIQY GQQVLCQRRT BACU008788/1-1145 FTVSLWDCDR KFRVKIRGID IPVLPRNADL TVFVEANIQY GQQVLCQRRT 401 450 ENSTTRP00000002929/1-1103 SPKPFTEEVL WNVWLEFSIK IKDLPKGALL NLQIYCGKAP ALSGKASAET ENSP00000352121/1-1102 SPKPFTEEVL WNVWLEFSIK IKDLPKGALL NLQIYCGKAP ALSSKASAES ENSBTAP00000027780/1-885 SPKPFTEEVL WNVWLEFSIK IKDLPKGALL NLQIYCGKAP ALSGKASAET bmy_12518T0/1-1006 SPKPFTEEVL WNVWLEFSIK IKDLPKGALL NLQIYCGKAP ALSGKASAEA BACU008788/1-1145 SPKPFTEE-- ---------- ---------- ---IYCGKAP ALSSKASAEA 451 500 ENSTTRP00000002929/1-1103 PSPESRGKAQ LLYYVNLLLI DHRFLLRHGE YVLHMWQLSG KAEDHGSINA ENSP00000352121/1-1102 PSSESKGKVQ LLYYVNLLLI DHRFLLRRGE YVLHMWQISG KGEDQGSFNA ENSBTAP00000027780/1-885 PSPESRGKAQ LLYYVNLLLI DHRFLLRHGE YVLHMWQLSG KGEDQGSFNA bmy_12518T0/1-1006 PGPESRGKAQ LLYYVNLLLI DHRFLLRHGE YVLHMWQLSG KAEDQGSFNA BACU008788/1-1145 PAPESRGKAQ LLYYVNLLLI DHRFLLRHGE YVLHMWQLSG KAEDQGSFNA 501 550 ENSTTRP00000002929/1-1103 DKLTSATNPD KENSMSISIL LDNYCHPIAL PKHRPTPDPE GDRVRAEMPN ENSP00000352121/1-1102 DKLTSATNPD KENSMSISIL LDNYCHPIAL PKHQPTPDPE GDRVRAEMPN ENSBTAP00000027780/1-885 DKLTSATNPD KENSMSISIL LDNYCHPIAL PKHQPTPDPE GDRVRAEMPN bmy_12518T0/1-1006 DKLTSATNPD KENSMSISIL LDNYCHPIAL PKHRPTPDPE GDRVRAEMPN BACU008788/1-1145 DKLTSATNPD KENSMSISIL LDNYCHPIAL PKHRPTPDPE GDRVRAEMPN 551 600 ENSTTRP00000002929/1-1103 QLRKQLEAII ATDPLNPLTA EDKELLWHFR YESLKDPKAY PKLFSSVKWG ENSP00000352121/1-1102 QLRKQLEAII ATDPLNPLTA EDKELLWHFR YESLKHPKAY PKLFSSVKWG ENSBTAP00000027780/1-885 QLRKQLEAII ATDPLNPLTA EDKELLWHFR YESLKDPKAY PKLFSSVKWG bmy_12518T0/1-1006 QLRKQLEAII ATDPLNPLTA EDKELLWHFR YESLKDPKAY PKLFSSVKWG BACU008788/1-1145 QLRKQLEAII ATDPLNPLTA EDKELLWHFR YESLKDPKAY PKLFSSVKWG 601 650 ENSTTRP00000002929/1-1103 QQEIVAKTYQ LLARREVWDQ SALDVGLTMQ LLDCNFSDEN VRAIAVQKLE ENSP00000352121/1-1102 QQEIVAKTYQ LLARREVWDQ SALDVGLTMQ LLDCNFSDEN VRAIAVQKLE ENSBTAP00000027780/1-885 QQEIVAKTYQ LLARREVWDQ SALDVGLTMQ LLDCNFSDEN VRAIAVQKLE bmy_12518T0/1-1006 QQEIVAKTYQ LLARREVWDQ SALDVGLTMQ LLDCNFSDEN VRAIAVQKLE BACU008788/1-1145 QQEIVAKTYQ LLARREVWDQ SALDVGLTMQ LLDCNFSDEN VRAIAVQKLE 651 700 ENSTTRP00000002929/1-1103 SLEDDDVLHY LLQLVQAVKF EPYHDSALAR FLLNRELRNK RIGHFLFWFL ENSP00000352121/1-1102 SLEDDDVLHY LLQLVQAVKF EPYHDSALAR FLLKRGLRNK RIGHFLFWFL ENSBTAP00000027780/1-885 SLEDDDVLHY LLQLVQAVKF EPYHDSALAR FLLKRGLRNK RIGHFLFWFL bmy_12518T0/1-1006 SLEDDDVLHY LLQLVQAVKF EPYHDSALAR FLLKRGLRNK RIGHFLFWFL BACU008788/1-1145 SLEDDDVLHY LLQLVQAVKF EPYHDSALAR FLLKRGLRNK RIGHFLFWFL 701 750 ENSTTRP00000002929/1-1103 RSEIAQSRHY QQRFAVILEA YLRGCGTAML HDFTQQVQVI DMLQKVTMDI ENSP00000352121/1-1102 RSEIAQSRHY QQRFAVILEA YLRGCGTAML HDFTQQVQVI EMLQKVTLDI ENSBTAP00000027780/1-885 RSEIAQSRHY QQRFAVILEA YLRGCGTAML RDFTQQVQVI DMLQKVTIDI bmy_12518T0/1-1006 RSEIAQSRHY QQRFAVILEA YLRGCGTAML RDFTQQVQVI DMLQKVTIDI BACU008788/1-1145 RSEIAQSRHY QQRFAVILEA YLRGCGTAML RDFTQQVQVI DMLQKVTIDI 751 800 ENSTTRP00000002929/1-1103 KSLSAEKYDV SSQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ENSP00000352121/1-1102 KSLSAEKYDV SSQVISQLKQ KLENLQNSQL PESFRVPYDP GLKAGALA-- ENSBTAP00000027780/1-885 KSLSAEKYDV SSQVIFQLKQ KLEILQNLNL PQSFRVPYDP GLKAGALV-- bmy_12518T0/1-1006 KSLSAEKYDV SSQVISQLKQ KLEILQNLNL PQSFRVPYDP GLKAGALV-- BACU008788/1-1145 KSLSAEKYDV SSQVISQLKQ KLEILQNLNL PQSFRVPYDP GLKAGALVVG 801 850 ENSTTRP00000002929/1-1103 ---------- ---------- ---------I EKCKVMASKK KPLWLEFKCA ENSP00000352121/1-1102 ---------- ---------- ---------I EKCKVMASKK KPLWLEFKCA ENSBTAP00000027780/1-885 ---------- ---------- ---------I EKCKVMASKK KPLWLEFKCA bmy_12518T0/1-1006 ---------- ---------- ---------I EKCKVMASKK KPLWLEFKCA BACU008788/1-1145 VYRDALQEGV RLHNVSSIVC GKHVAVFLQI EKCKVMASKK KPLWLEFKCA 851 900 ENSTTRP00000002929/1-1103 DPTALSNETI GIIFKHGDDL RQDMLILQIL RIMESIWETE SLDLCLLPYG ENSP00000352121/1-1102 DPTALSNETI GIIFKHGDDL RQDMLILQIL RIMESIWETE SLDLCLLPYG ENSBTAP00000027780/1-885 DPTALSNETI GIIFKHGDDL RQDMLILQIL RIMESIWETE SLDLCLLPYG bmy_12518T0/1-1006 DPTALSNETI GIIFKHGDDL RQDMLILQIL RIMESIWETE SLDLCLLPYG BACU008788/1-1145 DPTALSKETI GIIFKHGDDL RQDMLILQIL RIMESIWETE SLDLCLLPYG 901 950 ENSTTRP00000002929/1-1103 CISTGDKIGM IEIVKDATTI AKIQQSTVGN TGAFKDEVLN HWLKEKCPIE ENSP00000352121/1-1102 CISTGDKIGM IEIVKDATTI AKIQQSTVGN TGAFKDEVLN HWLKEKSPTE ENSBTAP00000027780/1-885 CISTGDKIG- ---------- ---------- ---------- ---------- bmy_12518T0/1-1006 CISTGDKIGM IEIVKDATTI AKIQQSTVGN TGAFKDEVLN HWLKEKCPIE BACU008788/1-1145 CISTGDKIGM IEIVKDATTI AKIQQSTVGN TGAFKDEVLN HWLKEKCPIE 951 1000 ENSTTRP00000002929/1-1103 EKFQAAVERF VYSCAGYCVA TFVLGIGDRH NDNIMISETG NLFHIDFGHI ENSP00000352121/1-1102 EKFQAAVERF VYSCAGYCVA TFVLGIGDRH NDNIMITETG NLFHIDFGHI ENSBTAP00000027780/1-885 ---------- ---------- ---------- ---------- ---------- bmy_12518T0/1-1006 EKFQAAVERF VYSCAGYCVA TFVLGI---- ---------G NLFHIDFGHI BACU008788/1-1145 EKFQAAVERF VYSCAGYCVA TFVLGIGDRH NDNIMISETG NLFHIDFGHI 1001 1050 ENSTTRP00000002929/1-1103 LGNYKSFLGI NKERVPFVLT PDFLFVMGTS GKKTSRHFQK FQDVCVKAYL ENSP00000352121/1-1102 LGNYKSFLGI NKERVPFVLT PDFLFVMGTS GKKTSPHFQK FQDICVKAYL ENSBTAP00000027780/1-885 ---------- NHQHEP---- ---------- GK-------- ---------- bmy_12518T0/1-1006 LGNYKSFLGI NKERVPFVLT PDFLFVMGTS GKKTSLHFQK FQ-------- BACU008788/1-1145 LGNYKSFLGI NKERVPFVLT PDFLFVMGTS GKKTSLHFQK FQGARGAWTK 1051 1100 ENSTTRP00000002929/1-1103 ALRHHTNLLI ILFSMMLM-- ---------- ---------- ---------- ENSP00000352121/1-1102 ALRHHTNLLI ILFSMMLM-- ---------- ---------- ---------- ENSBTAP00000027780/1-885 ---------- ---------- ---------- ---------- ---------- bmy_12518T0/1-1006 ---------- ---------- ---------- ---------- ---------- BACU008788/1-1145 AGTAQTVLSL LLCGCLRQGL PSPSSSHKPS HHPLLHDVDD RNALVNQQRR 1101 1150 ENSTTRP00000002929/1-1103 -----TGMPQ LTSKEDIEYI RDALTVGKSE EDAKKYFLDQ IEVCRDKGWT ENSP00000352121/1-1102 -----TGMPQ LTSKEDIEYI RDALTVGKNE EDAKKYFLDQ IEVCRDKGWT ENSBTAP00000027780/1-885 ---------- ---------- ---------- ---------- ---------- bmy_12518T0/1-1006 ---------- ---------- ---------- ---------- -----DSPMT BACU008788/1-1145 HRIHSGGMPQ LTSKEDIEYI RDALTVGKSE EEAKKYFLDQ IEVCRDKGWT 1151 1200 ENSTTRP00000002929/1-1103 VQFNWFLHLV LGIKQGEKHS A ENSP00000352121/1-1102 VQFNWFLHLV LGIKQGEKHS A ENSBTAP00000027780/1-885 ---------- ---------- - bmy_12518T0/1-1006 VSFS------ ---------- - BACU008788/1-1145 VQFNWFLHLV LGIKQGEKHS A