KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:33:57 2014 Check: 00 .. Name: ENSP00000233838/1-758 Len: 807 Check: 2938 Weight: 1.00 Name: ENSBTAP00000027811/1-758 Len: 807 Check: 963 Weight: 1.00 Name: ENSTTRP00000008505/1-757 Len: 807 Check: 2678 Weight: 1.00 Name: bmy_21867T0/1-786 Len: 807 Check: 2292 Weight: 1.00 Name: BACU005913/1-758 Len: 807 Check: 1265 Weight: 1.00 // 1 50 ENSP00000233838/1-758 MAVSAGSART SPSSDKVQKD KAELISGPRQ DSRIGKLLGF EWTDLSSWRR ENSBTAP00000027811/1-758 MAVSARPARA PRGSDKVKKD KAAQTSGPRQ GSRMGKLLGF EWTDVSSWER ENSTTRP00000008505/1-757 MAVSARSALS PPDSDKVQKD KAGQTSGRRQ GSRMEKLLGF EWTDVSSWGK bmy_21867T0/1-786 MAVSARSARS PPDSDKVQKD KAGQTSGRRQ GSRMGKLLGF EWTDVSSWGR BACU005913/1-758 MVVSARSARS PPDSDKVQKD KAGQTSGRRQ GSRMGKLLGF EWTDVSSWGR 51 100 ENSP00000233838/1-758 LVTLLNRPTD PASLAVFRFL FGFLMVLDIP QERGLSSLDR KYLDGLDVCR ENSBTAP00000027811/1-758 LVTLLNRPTD PAGLAVFRFL FGLMMVLDIP QERGLSSLDR RYLDGLEVCR ENSTTRP00000008505/1-757 LVTLLNRPTD PASLAVFRFL FGLMMVLDIP QERGLSSLDR RYLDGLEVCR bmy_21867T0/1-786 LVTLLNRPTD PASLAVFRFL FGLMMVLDIP QERGLSSLDR RYLDGLEVCR BACU005913/1-758 LVTLLNRPTD PASLAVFRFL FGLMMVLDIP QERGLSSLDQ RYLDGLEVCR 101 150 ENSP00000233838/1-758 FPLLDALRPL PLDWMYLVYT IMFLGALGMM LGLCYRISCV LFLLPYWYVF ENSBTAP00000027811/1-758 FPLLDALQPL PLDWMYLIYT IMFLGALGMM LGLCYRISCV LFLLPYWYVF ENSTTRP00000008505/1-757 FPLLDALQPL PLDWMYLVYT IMFLGALGMM LGLRYRISCV LFLLPYWYVF bmy_21867T0/1-786 FPLLDALQPL PLDWMYLVYT IMFLGALGMM LGLRYRISCV LFLLPYWYVF BACU005913/1-758 FPLLDALQPL PLDWMYLVYT IMFLGALGMM LGLRYRISCV LFLLPYWYVF 151 200 ENSP00000233838/1-758 LLDKTSWNNH SYLYGLLAFQ LTFMDANHYW SVDGLLNAHR RNAHVPLWNY ENSBTAP00000027811/1-758 LLDKTSWNNH SYLYGLLAFQ LTFVDAHHYW SVDGLLRARK RNAHVPLWNY ENSTTRP00000008505/1-757 LLDKTSWNNH SYLYGLLAFQ LTFMDANRYW SVDGLLNARK RNAHVPLWNY bmy_21867T0/1-786 LLDKTSWNNH SYLYGLLAFQ LTFMDANRYW SVDGLLNARK RNAHVPLWNY BACU005913/1-758 LLDKTSWNNH SYLYGLLAFQ LTFMDANHYW SVDGLLNARK RNAHVPLWNY 201 250 ENSP00000233838/1-758 AVLRGQIFIV YFIAGVKKLD ADWVEGYSME YLSRHWLFSP FKLLLSEELT ENSBTAP00000027811/1-758 AVLRGQIFIV YFIAGIKKLD ADWVEGYSME YLSRHWLFSP FKLVLSEEMT ENSTTRP00000008505/1-757 AVLRGQXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXFVLSEEMT bmy_21867T0/1-786 AVLRGQIFIV YFIAGVKKLD ADWVEGYSMD YLSRHWLFSP FKFVLSEEMT BACU005913/1-758 AVLRGQIFIV YFIAGVKKLD ADWVEGYSMD YLSRHWLFSP FKFVLSEEMT 251 300 ENSP00000233838/1-758 SLLVVHWGGL LLDLSAGFLL FFDVSRSIGL FFVSYFHCMN SQLFSIGMFS ENSBTAP00000027811/1-758 SLLVVHWCGL LLDLSAGFLL FFDASRPIGF VFVSYFHCMN SQLFSIGMFP ENSTTRP00000008505/1-757 SLLVVHWCGL LLDLSAGFLL FFDASRSIGL LFVSYFHCMN SQLFSIGMFP bmy_21867T0/1-786 SLLVVHWCGL LLDLSAGFLL FFDASRSIGL LFVSYFHCMN SQLFSIGMFP BACU005913/1-758 SLLVVHWCGL LLDLSAGFLL FFDASRSIGL LFVSYFHCMN SQLFSIGMFP 301 350 ENSP00000233838/1-758 YVMLASSPLF CSPEWPRKLV SYCPRRLQQL LPLKAAPQPS VSCVYKRSRG ENSBTAP00000027811/1-758 YVMLASSPLF CSPEWPRKLV AHCPKKLQEL LPLRTAPQPS TSCMYKRSRA ENSTTRP00000008505/1-757 YVMLASSPLF CSPEWPRKLV AHCPKRLQEL LP-RTAPQPS ASCVYKRSRA bmy_21867T0/1-786 YVMLASSPLF CSPEWPRKLV AHCPKRLQEL LPLRTAPQPS ASCVYKRSRA BACU005913/1-758 YVMLASSPLF CSPEWPRKLV AHCPKRLQEL LPLRTAPQPS ASCVYKRSRA 351 400 ENSP00000233838/1-758 KSGQKPGLRH QLGAAFTLLY LLEQLFLPYS HFLT------ ---------- ENSBTAP00000027811/1-758 RGSQKPGLRH KLSTAFTLLY LLEQLFLPYS HFLT------ ---------- ENSTTRP00000008505/1-757 KGGQKPGLRH RLGAAFTLLY LLEQLFLPYS HFLT------ ---------- bmy_21867T0/1-786 KGGQKPGLRH RLGTAFTLLY LLEQLFLPYS HFLTQVRVGW GLPWIAVEAT BACU005913/1-758 KGGQNPGLRH RLGAAFTLLY LLEQLFLPYS HFLT------ ---------- 401 450 ENSP00000233838/1-758 ---------- ---------- ---------- ---QGYNNWT NGLYGYSWDM ENSBTAP00000027811/1-758 ---------- ---------- ---------- ---QGYNNWT NGLYGYSWDM ENSTTRP00000008505/1-757 ---------- ---------- ---------- ---QGYNNWT NGLYGYSWDM bmy_21867T0/1-786 ATGREWGWCC RPLLAEDGVS VRTVELIAAA LPPQGYNNWT NGLYGYSWDM BACU005913/1-758 ---------- ---------- ---------- ---QGYNNWT NGLYGYSWDM 451 500 ENSP00000233838/1-758 MVHSRSHQHV KITYRDGRTG ELGYLNPGVF TQSRRWKDHA DMLKQYATCL ENSBTAP00000027811/1-758 MVHSRSHQHV KITYRDGRTG ELGYLNPGVF TQSRRWKDHA DMLKQYATCL ENSTTRP00000008505/1-757 MVHSRSHQHV KITYRDGRTG ELGYLNPGVF TQSRRWKDHA DMLKQYATCL bmy_21867T0/1-786 MVHSRSHQHV KITYRDGRTG ELGYLNPGVF TQSRRWKDHA DMLKQYATCL BACU005913/1-758 MVHSRSHQHV KITYRDGRTG ELGYLNPGVF TQSRRWKDHA DMLKQYATCL 501 550 ENSP00000233838/1-758 SRLLPKYNVT EPQIYFDIWV SINDRFQQRI FDPRVDIVQA AWSPFQRTSW ENSBTAP00000027811/1-758 SRLLPKYNVT EPQIYFDIWV SINDRFQQRI FDPRVDIVQA AWSPFQRTPW ENSTTRP00000008505/1-757 SRLLPKYNVT EPQIYFDIWV SINDRFQQRI FDPRVDIVQA TWSPFQRTPW bmy_21867T0/1-786 SRLLPKYNVT EPQIFFDIWV SINDRFQQRI FDPRVDIVQA TWSPFQRTPW BACU005913/1-758 SHLLPKYNVT EPQIFFDIWV SINDRFQQRI FDPRVDIVQA TWSPFQRTPW 551 600 ENSP00000233838/1-758 VQPLLMDLSP WRAKLQEIKS SLDNHTEVVF IADFPGLHLE NFVSEDLGNT ENSBTAP00000027811/1-758 LQPLLMDLSP WRTKLQEIKS SLDNHTEVVF IADFPGLHLE NFVSEDLGNT ENSTTRP00000008505/1-757 LQPLLMDLSP WRTKLQEIKS SLDNHTEVVF IADFPGLHLE NFVSEDLGNT bmy_21867T0/1-786 LQPLLMDLSP WRTKLQEIKS SLDNHTEVVF IADFPGLHLE NFVSEDLGNT BACU005913/1-758 LQPLLMDLSP WRTKLQEIKS SLDNHTEVVF IADFPGLHLE NFVSEDLGNT 601 650 ENSP00000233838/1-758 SIQLLQGEVT VELVAEQKNQ TLREGEKMQL PAGEYHKVYT TSPSPSCYMY ENSBTAP00000027811/1-758 SIQLLQGEVT VELVAEQKNQ TLQEGEKMQL PAGEYHKVYT VSSSPSCYMY ENSTTRP00000008505/1-757 SIQLLQGEVT VELVAEQKNQ TLQEGEKMQL PAGEYHKVYT MSPSPSCYMY bmy_21867T0/1-786 SIQLLQGE-- ---------- ---------L PAGEYHKVYT MSPSPSCYMY BACU005913/1-758 SIQLLQGEVT VELVAEQKNQ TLQEGEKMKL PAGEYHKVYT VSPSPSCYMY 651 700 ENSP00000233838/1-758 VYVNTTELAL EQDLAYLQEL KEKVENGSET GPLPPELQPL LEGEVKGGPE ENSBTAP00000027811/1-758 IYVNTTEVAL EQDLAYLQEL KEKVENGSET GPLPPELQPL LEGEVKGGPE ENSTTRP00000008505/1-757 IYVNTTELAL EQDLAYLQEL KEKVENGSET EPLPPELQPL LEGEVKGGPE bmy_21867T0/1-786 MYVNTTELAL EQDLAYLQEL KEKVENGSET EPLPPELQPL LEGEVKGGPE BACU005913/1-758 IYVNTTELAL EQDLAYLQEL KEKVENGSET EPLPPELQPL LEGEVKGGPE 701 750 ENSP00000233838/1-758 PTPLVQTFLR RQQRLQEIER RRNTPFHERF FRFLLRKLYV FRRSFLMTCI ENSBTAP00000027811/1-758 PTPLVQTFLR RQQRLQEIER RRNAPFHERL VRFLLRKLFI FRRSFLMTCI ENSTTRP00000008505/1-757 PTPLVQTFLR RQQRLQEIER RRNAPFHERL LRFLLRKLYV FRRSFLMTCI bmy_21867T0/1-786 PTPLVQTFLR RQQRLQEIER RRNAPFHQRL LRFLLRKLYV FRRSFLMTCI BACU005913/1-758 PTPLVQTFLR RQQRLQEIER RRNAPFHERL LRFLLRKLYV FRRSFLMTCI 751 800 ENSP00000233838/1-758 SLRNLILGRP SLEQLAQEVT YANLRPFEAV GELNPSNTDS SHSNPPESNP ENSBTAP00000027811/1-758 SLRNLAFGRP SLEQLAQEVT YANLRPFEPA GEPSPVNTDS SNPNPPEPDS ENSTTRP00000008505/1-757 SLRNLVLGLP SLEQLAQEVT YANLRPFEPV GEPSPSNTDS SNPNPSEPNA bmy_21867T0/1-786 SLRNLVLGRP SLEQLAQEVT YANLRPFDPV GEPSPSNTDS SNPNPSEPNA BACU005913/1-758 SLRNLVLGRP SLEQLAQEVT YANLRPFEPV GEPSPSNTDS SNPNPSEPNA 801 850 ENSP00000233838/1-758 DPVHSEF ENSBTAP00000027811/1-758 HPVHSEF ENSTTRP00000008505/1-757 DTVHSEF bmy_21867T0/1-786 DPVHSEF BACU005913/1-758 DPVHSEF