KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:33:59 2014 Check: 00 ..
Name: ENSTTRP00000016214/1-411 Len: 490 Check: 4257 Weight: 1.00
Name: ENSP00000383894/1-486 Len: 490 Check: 4304 Weight: 1.00
Name: ENSBTAP00000027836/1-490 Len: 490 Check: 6567 Weight: 1.00
Name: bmy_03845T0/1-400 Len: 490 Check: 3729 Weight: 1.00
//
1 50
ENSTTRP00000016214/1-411 ---------- ---------- ---------- ---------- ----------
ENSP00000383894/1-486 MPRPAPARRL PGLLLLLWPL LLL--PSAAP DPVARPGFRR LETRGPGGSP
ENSBTAP00000027836/1-490 SAEPTMPRHL PGLLLLLWPL LLLPPPPAAP SPMARPGLRR LGTRGPGGSP
bmy_03845T0/1-400 ---------- ---------- ---------- ---------- ----------
51 100
ENSTTRP00000016214/1-411 ---------- ---------- --------VC KSMPLDLVFI IDSSRSVRPL
ENSP00000383894/1-486 GRR-PSPAAP DGAPASGTSE PGRARGAGVC KSRPLDLVFI IDSSRSVRPL
ENSBTAP00000027836/1-490 GRRGPAPAAP ASVPYSGTGQ PGGARGAGVC KSRPLDLVFI IDSSRSVRPL
bmy_03845T0/1-400 ---------- ---------- ---------- --MPLDLVFI IDSSRSVRPL
101 150
ENSTTRP00000016214/1-411 EFTKVKTFIS RVIDTLDIGP ADTRVAVVNY ASTVKIEFHL QTHSDKQSLK
ENSP00000383894/1-486 EFTKVKTFVS RIIDTLDIGP ADTRVAVVNY ASTVKIEFQL QAYTDKQSLK
ENSBTAP00000027836/1-490 QFTKVKTFVS KIIDTLDIGP MDTRVAVVNY ASTVKIEFHL QTHSDKQSLK
bmy_03845T0/1-400 EFTKVKTFVS RVIDTLDIGP ADTRVAVVNY ASTVKIEFHL QTHSDKQSLK
151 200
ENSTTRP00000016214/1-411 QAVARITPLS TGTMSGLAIQ TAMDEAFTVE AGARGPASNI PKVAIIVTDG
ENSP00000383894/1-486 QAVGRITPLS TGTMSGLAIQ TAMDEAFTVE AGAREPSSNI PKVAIIVTDG
ENSBTAP00000027836/1-490 RAVARITPLS TGTMSGLAIQ TAMDEAFTVE AGARGPSSNI PKVAIIVTDG
bmy_03845T0/1-400 QAVARITPLS TGTMSGLAIQ TAMDEAFTVE AGARGPASNI PKVAIIVTDG
201 250
ENSTTRP00000016214/1-411 RPQDQVNEVA ARAQASGIEL YAVGVDRADM ESLRMMASEP LDEHVFYVET
ENSP00000383894/1-486 RPQDQVNEVA ARAQASGIEL YAVGVDRADM ASLKMMASEP LEEHVFYVET
ENSBTAP00000027836/1-490 RPQDQVNEVA ARARASGIEL YAVGVDRADM ESLKMMASEP LDEHVFYVET
bmy_03845T0/1-400 RPQDQVNEVA ARAQASGIEL YAVGVDRADM ESLKMMASEP LDEHVFYVET
251 300
ENSTTRP00000016214/1-411 YGVIEKLSSR FQETFCALDP CALGTHQCQH VCVSDGEGKH HCECSQGYSL
ENSP00000383894/1-486 YGVIEKLSSR FQETFCALDP CVLGTHQCQH VCISDGEGKH HCECSQGYTL
ENSBTAP00000027836/1-490 YGVIEKLSSR FQETFCALDP CALGTHQCQH VCISDGEGRH HCECSQGYSL
bmy_03845T0/1-400 YGVIEKLSSR FQKTFCALDP CALGTHQCQH VCVSDGEGKH HCECSQGYSL
301 350
ENSTTRP00000016214/1-411 NADKKTCSVI NKCALNTHGC EHICVNDRNG SYHCECYEGY TLNEDRKTCS
ENSP00000383894/1-486 NADKKTCSAL DRCALNTHGC EHICVNDRSG SYHCECYEGY TLNEDRKTCS
ENSBTAP00000027836/1-490 NADKKTCSAI DKCALNTHGC EHICVNDRTG SYHCECYEGY TLNEDRKTCS
bmy_03845T0/1-400 NADKKTCSVI DKCALNTHGC EHICVNDRTG SYHCECYEGY TLNEDRKTCS
351 400
ENSTTRP00000016214/1-411 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXRDQCALG
ENSP00000383894/1-486 AQDKCALGTH GCQHICVNDR TGSHHCECYE GYTLNADKKT CSVRDKCALG
ENSBTAP00000027836/1-490 AQDQCALGTH GCQHICVNDR AGSHHCECYE GYTLNEDKKT CSVLNQCALG
bmy_03845T0/1-400 AQDQCALGTH GCQHICVNDR AGSHHCECYE GYTLNEDKKT CSVRNQCALG
401 450
ENSTTRP00000016214/1-411 SHGCQHICVN DGAASYHCDC YTGYTLNEDK KTCSAIAEAR RLISTEDACA
ENSP00000383894/1-486 SHGCQHICVS DGAASYHCDC YPGYTLNEDK KTCSATEEAR RLVSTEDACG
ENSBTAP00000027836/1-490 SHGCQHICVY DGNASYHCDC DTGYTLNEDK KTCSAIEEAR RLISTEDACA
bmy_03845T0/1-400 SHGCQHICVN DGAASYHCDC YTGYTLNEDK KTCSAIAEAR RLISTEDACA
451 500
ENSTTRP00000016214/1-411 CEATLAFQDK VSSYLQRLNT K-LDDILEKL QANEYGQIHR
ENSP00000383894/1-486 CEATLAFQDK VSSYLQRLNT K-LDDILEKL KINEYGQIHR
ENSBTAP00000027836/1-490 CEATLAFQDK VNSYLQRLNS KSLDDILEKL QANEYGQVHR
bmy_03845T0/1-400 CEATLAFQDK VSSYLQRLNT K-------HI LSGSFSASA-