KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:03 2014 Check: 00 .. Name: ENSP00000391676/1-1124 Len: 1149 Check: 1263 Weight: 1.00 Name: bmy_02608T0/1-949 Len: 1149 Check: 4841 Weight: 1.00 Name: ENSTTRP00000007331/1-1125 Len: 1149 Check: 7879 Weight: 1.00 Name: ENSBTAP00000027857/1-1105 Len: 1149 Check: 4845 Weight: 1.00 Name: BACU016676/1-1118 Len: 1149 Check: 1472 Weight: 1.00 // 1 50 ENSP00000391676/1-1124 ---------- --------MA PPSEETPLIP QRSCSLLSTE AGALHVLLPA bmy_02608T0/1-949 ---------- --------MA PPSEETPLIS QRSCSLSSSE AGALHVLLPP ENSTTRP00000007331/1-1125 ---------- --------MA PPSEETPLIP QRSCSLSSSE AGALHVLLPP ENSBTAP00000027857/1-1105 ---------- --------MA PPSEETPLIS QRSCSLSSSE AGALHVLLPP BACU016676/1-1118 MAMTFAGPEV LTSRQVALMA PPSEETPLIP QRSCSLSSSE AGALHVLLPP 51 100 ENSP00000391676/1-1124 RGPGPPQRLS FSFGDHLAED LCV-QAAKAS GIL-PVYHSL FALATEDLSC bmy_02608T0/1-949 RGPGPPQCLS FSFGDHSAEE LCASCPCTTP SLLWPWRTCP VGSPRATSSP ENSTTRP00000007331/1-1125 RGPGPPQCLS FSFGDHSAEE LCV-WAAKAS GIL-PVYHSL FALALEDLSC ENSBTAP00000027857/1-1105 RGPGPPQCLS FSFGDHSAED LCV-CAAKAS GIL-PVYHSL FALALEDLSC BACU016676/1-1118 RGPGPPQCLS FSFGDHSAEE LCV-WAAKAS GIL-PVYHSL FALALEDLSC 101 150 ENSP00000391676/1-1124 WFPPSHIFSV EDASTQVLLY RIRFYFPNWF GLEKCHRFGL RKDLASAILD bmy_02608T0/1-949 WRTRAPRSLS TGSGRKCPL- ------PAP- PTEKCHRFGL RKDLASAILD ENSTTRP00000007331/1-1125 WFPPSHIFSV EDAGTQVLVY RLRFYFPNW- GLEKVHRFGL RKDVASAILD ENSBTAP00000027857/1-1105 WFPPSHIFSV EDTGTQVLVY RLRFYFPNWF GLEKCHRFGL RKDLTSAILD BACU016676/1-1118 WFPPSHIFSV EDAGTQVLVY RLRFYFPNWF GLEKCHRFGL RKDLASAILD 151 200 ENSP00000391676/1-1124 LPVLEHLFAQ HRSDLVSGRL PVGLSLKEQG ECLSLAVLDL ARMAREQAQR bmy_02608T0/1-949 LPVLEHLFAQ HRNDLVSGRL PMGLSLKEQG ECLSLAVLDL AQMALEQGQR ENSTTRP00000007331/1-1125 LPVLEHLFAQ HRNDLVSGRL PMGLSLKEQG ECLSLAVLDL AQMALEQGQR ENSBTAP00000027857/1-1105 LPVLEHLFAQ HRHDLVSGRL RVGLSLKEQG ECLSLAVLDL ARMALEQAQR BACU016676/1-1118 LPVLEHLFAQ HRNDLVSGRL PMGLSLKEQG ECLSLAVLDL AQMALEQGQR 201 250 ENSP00000391676/1-1124 PGELLKTVSY KACLPPSLRD LIQGLSFVTR RRIRRTVRRA LRRVAACQAD bmy_02608T0/1-949 PEELLKTISY KVCLPPGLRD LIQGLSFVTR RRIRRTVRRA LRRLAACQAD ENSTTRP00000007331/1-1125 PEELLKTISY K-CLPPGLRD LIQGLNFVTR RRIRRTVRRA LRRLAACQAD ENSBTAP00000027857/1-1105 PEELLKTVSY KVCLPPGLRD LIQGLSFVTR RRIRRTVCRA LRGVATCQAD BACU016676/1-1118 PEELLKTISY KVCLPPGLRD LIQGLSFVTR RRIRRTVRRA LRRLAACQAD 251 300 ENSP00000391676/1-1124 RHSLMAKYIM DLERLDPAGA AETFHVGLPG ALGGHDGLGL LRVAGDGGIA bmy_02608T0/1-949 KHSLMAKYIM DLERLDPDRA TETFRVGLPG AAGGQDAPGL LRVAGGSGIA ENSTTRP00000007331/1-1125 KHSLMAKYIM DLERLDPDRA TETFRVALPG AAGGQDAPGQ LRVAGGSGIA ENSBTAP00000027857/1-1105 RHSLMVKYIM DLERLDPDRA AETFRVGLPG AAGGQDTPGL LRVAGGSGIA BACU016676/1-1118 KHSLMAKYIM DLERLDPDRA TETFCVGLPG AAGGQDAPGL LRVAGGSGIA 301 350 ENSP00000391676/1-1124 WTQGEQEVLQ PFCDFPEIVD ISIKQAPRVG PAGEHRLVTV TRTDNQILEA bmy_02608T0/1-949 WSPGEHEVLQ PFCDFPEIVD ISIKQAPRIG PAGEHRLVTI TRTDNQILEA ENSTTRP00000007331/1-1125 WSPGEHEVLQ PFCDFPEIVD ISIKQAPRFG PAGEHRLVTI TRTDNQILEA ENSBTAP00000027857/1-1105 WSPGEHEVLQ PFCDFPEIVD ISIKQAPCIG PAAEHRLVTI TRTDNQILEA BACU016676/1-1118 WSPGEHKVLQ PFCDFPEIVD ISIKQAPRIG PAGEHRLVTI TRTDNQILEA 351 400 ENSP00000391676/1-1124 EFPGLPEALS FVALVDGYFR LTTDSQHFFC KEVAPPRLLE EVAEQCHGPI bmy_02608T0/1-949 EFPGLPAALS FVALVDGYFR LTTDSGHYFC KEVAPPRLLE QVAEHCHGPI ENSTTRP00000007331/1-1125 EFPGLPAALS FVALVDGYFR LTTDSGHYFC KEVAPPRLLE QVAEQCHGPI ENSBTAP00000027857/1-1105 EFPGLPAALS FVALVDGYFR LTTDSRHYFC REVAPPRLLE EVAEQCHGPI BACU016676/1-1118 EFPGLPAALS FVALVDGYFR LTTDSGHYFC KEVAPPRLLE QVAEQCHGPI 401 450 ENSP00000391676/1-1124 TLDFAINKLK TGGSRPGSYV LRRSPQDFDS FLLTVCVQNP LGPDYKGCLI bmy_02608T0/1-949 TLDFAINKLK TGGSLPGSY- ---------- ---------- ------GCLI ENSTTRP00000007331/1-1125 TLDFAINKLK TGGSLPGSYV LRRSPQDFDS YLLTVCVPTP LGPDYKGCLI ENSBTAP00000027857/1-1105 TLDFAINKLK TGGSLPGSYV LRRSPQDFDS YLLTVCVLTP LGPDYKGCLI BACU016676/1-1118 TLDFAINKLK TGGSLPGSFV LRRSPQDFDS YLLTVCVPTP LGPDYKGCLI 451 500 ENSP00000391676/1-1124 RRSPTGTFLL VGLSRPHSSL RELLATCWDG GLHVDGVAVT LTSCCIPRPK bmy_02608T0/1-949 RCDPTGTFSL AGLGRPHSSL RELLAAYWDG GLHVDGVELN LTFCCSPRPK ENSTTRP00000007331/1-1125 RCDPTGTFSL AGLGQPHSSL RELLAAYWGG GLHVDGVELN LTFCCTPRPK ENSBTAP00000027857/1-1105 RCDPTGTFSL AGLGRSHSSL RELLAACWNG GLHVDGVELY LTFCCNPRPK BACU016676/1-1118 RCDPTGTFSL AGLGRPHSSL RELLAACWDG GLHVDGVELN LTFCCSPRPK 501 550 ENSP00000391676/1-1124 EKSNLIVVQR GHSPPTSSLV QPQSQYQLSQ MTFHKIPADS LEWHENLGHG bmy_02608T0/1-949 EKSNLIVIRR DCNPPTSSPV QPQSQCQLSQ MTFHKIPADS LEWHENLGHG ENSTTRP00000007331/1-1125 EKSNLIVVRR DCNPPTSSPV QPQSQCQLSQ MTFHKIPADS LEWHENLGHG ENSBTAP00000027857/1-1105 EKSNLIVVRR GCNPPTSSPV QPQFQCQLSQ MTFHKIPADS LQWHENLGHG BACU016676/1-1118 EKSNLIVVRR DCNPPTSSPV QPQSQCQLSQ MTFHKIPADS LEWHENLGHG 551 600 ENSP00000391676/1-1124 SFTKIYRGCR HEVVDGEARK TEVLLKVMDA KHKNCMESFL EAASLMSQVS bmy_02608T0/1-949 SFTKIYRGCR HEVVDGEARE TEVLLKVMDA KHKNCMESFL EAATLMSQVS ENSTTRP00000007331/1-1125 SFTKIYRGCR HEVVDGEARE TEVLLKVMDA KHKNCMESFL EAASLMSQVS ENSBTAP00000027857/1-1105 SFTKIYRGCH HEIVDGEARE TEVLLKVMDA KHKNCMESFL EAASLMSQVS BACU016676/1-1118 SFTKIYRGCR HEVVDGEARE TEVLLKVMDA KHKNCMESFL EAATLMSQVS 601 650 ENSP00000391676/1-1124 YRHLVLLHGV CMAGDSTMVQ EFVHLGAIDM YLRKRGHLVP ASWKLQVVKQ bmy_02608T0/1-949 YQHLVLLHGV CMAGDSIMVQ EFVYLGALDT YLRKCGQLVP ASWKLQ---- ENSTTRP00000007331/1-1125 YQHLVLLHGV CMAGDSIMVQ EFVYLGALDT YLRKCGQLVP ASWKLQVIKQ ENSBTAP00000027857/1-1105 YQHLVLLHGV CMAGDSIMVQ EFVRLGALDT YLRKCGHLVP ASWKLQVIKQ BACU016676/1-1118 YQHLVLLHGV CMAGDGIMVQ EFVYLGALDT YLRKCGQLVP ASWKLQVIKQ 651 700 ENSP00000391676/1-1124 LAYALNYLED KGLPHGNVSA RKVLLAREGA DGSPPFIKLS DPGVSPAVLS bmy_02608T0/1-949 ---------- ---------- --VLLAREGA DGNLPFIKLS DPGVSPTVLS ENSTTRP00000007331/1-1125 LAYALNYLED KGLPHGNVSA RKVLLAREGA DGNLPFIKLS DPGVSPTVLS ENSBTAP00000027857/1-1105 LAYALNYLED KGLPHGNVSA RKVLLAREGT DGNLPFIKLS DPGVSPTVLS BACU016676/1-1118 LAYALNYLED KGLPHGNVSA RKVLLAREGA DGNLPFIKLS DPGVSPTVLS 701 750 ENSP00000391676/1-1124 LEMLTDRIPW VAPECLREAQ TLSLEADKWG FGATVWEVFS GVTMPISALD bmy_02608T0/1-949 LEMLTDRIPW VAPECLQEAR TLGLEADKWG FGATVWEVFS GVTMPISTLD ENSTTRP00000007331/1-1125 LEMLTDRIPW VAPECLQEAR TLGLEADKWG FGATVWEVFS GVTMPISTLD ENSBTAP00000027857/1-1105 LEMLTDRIPW VAPECLQEAR TLGLEADKWG FGATVWEVFS GVTVPISTLE BACU016676/1-1118 LEMLTDRIPW VAPECLQEAR TLGLEADKWG FGATVWEVFS GVTMPISTLD 751 800 ENSP00000391676/1-1124 PAKKLQFYED RQQLPAPKWT ELALLIQQCM AYEPVQRPSF RAVIRDLNSL bmy_02608T0/1-949 PAKKLQFYQE RQQLPAPKWM ELALLIQQCM AYEPGQRPSF RAVIRDLNSL ENSTTRP00000007331/1-1125 PAKKLQFYQE RQQLPAPKWM ELALLIQQCM AYEPGQRPSF RAVIRDLNSL ENSBTAP00000027857/1-1105 PAKKLQFYQE RQQLPAPKWM ELALLIQQCM AYEPGQRPSF RAVIRDLNSL BACU016676/1-1118 PAKKLQFYQE RQQLPAPKWM ELALLIQQCM AYEPGQRPSF RAVIRDLNSL 801 850 ENSP00000391676/1-1124 ISS-DYELLS DPTPGALAPR DGLWNGAQLY ACQDPTIFEE RHLKYISQLG bmy_02608T0/1-949 ITS------- ---------- ------APMH VDTSPAV--- ---------P ENSTTRP00000007331/1-1125 ITS-DYELLS DPTPGALAPH DGLWNGAQLY ACQDPTIFEE RHLKYISQLG ENSBTAP00000027857/1-1105 ITSADYELLS DPTPGTLAPR DGLWNGTQLY ACQDPTIFEE RHLKYISQLG BACU016676/1-1118 ITS-DYELLS DPTPGALAPR DGLWNGAQLY ACQDPTIFEE RHLKYISQLG 851 900 ENSP00000391676/1-1124 KGNFGSVELC RYDPLGDNTG ALVAVKQLQH SGPDQQRDFQ REIQILKALH bmy_02608T0/1-949 QGNFGSVELC RYDPLGDNTG ALVAVKQLQH SGPEQQRDFQ REIQILKALH ENSTTRP00000007331/1-1125 KGNFGSVELC RYDPLGDNTG ALVAVKQLQH SGPEQQRDFQ REIQILKALH ENSBTAP00000027857/1-1105 KGNFGSVELC RYDPLGDNTG ALVAVKQLQH SGPEQQRDFQ REIQILKALH BACU016676/1-1118 KGNFGSVELC RYDPLGDNTG ALVAVKQLQH SGPEQQRDFQ REIQILKALH 901 950 ENSP00000391676/1-1124 SDFIVKYRGV SYGPGRQSLR LVMEYLPSGC LRDFLQRHRA RLDASRLLLY bmy_02608T0/1-949 SDFIVKYRGV SYGPGRLSLR LVMEYLPSGC LRDFLQRHRA RLDAGRLLLY ENSTTRP00000007331/1-1125 SDFIVKYRGV SYGPGRLSLR LVMEYLPSGC LRDFLQRHRA RLDAGRLLLY ENSBTAP00000027857/1-1105 SDFIVKYRGV SYGPGRQSLR LVMEYLPSGC LRDFLQRHRA RLDAGRLLLY BACU016676/1-1118 SDFIVKYRGV SYGPGRLSLR LVMEYLPSGC LRDFLQRHRA RLDAGRLLLY 951 1000 ENSP00000391676/1-1124 SSQICKGMEY LGSRRCVHRD LAARNILVES EAHVKIADFG LAKLLPLDKD bmy_02608T0/1-949 ASQICK---- ---------- ---------- ---------- ---------- ENSTTRP00000007331/1-1125 ASQICKGMEY LGSRRCVHRD LAARNILVES ETHVKIADFG LAKLLPLDKD ENSBTAP00000027857/1-1105 ASQICKGMEY LGSCRCLHRD LAARNILVES ETHVKIADFG LAKLLPLDKE BACU016676/1-1118 ASQICKGMEY LGSRRCVHRD LAARNILVES ETHVKIADFG LAKLLPLDKD 1001 1050 ENSP00000391676/1-1124 YYVVRE-PGQ SPIFWYAPES LSDNIFSRQS DVWSFGVVLY ELFTYCDKSC bmy_02608T0/1-949 ---------- ---------S LSDNIFSRQS DVWSFGVVLY ELFTYSDKSC ENSTTRP00000007331/1-1125 YYVVRE-PGQ SPIFXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000027857/1-1105 YYVVRE-PGQ SPIFWYAPES LSDNIFSRQS DVWSFGVVLY ELFTYSDKNC BACU016676/1-1118 YYVASLFPSR -----YAPES LSDNIFSRQS DVWSFGVVLY ELFTYSDKSC 1051 1100 ENSP00000391676/1-1124 SPSAEFLRMM GCERDVPALC RLLELLEEGQ RLPAPPACPA EVHELMKLCW bmy_02608T0/1-949 SPSAEFLRMM GCERDVPALC RLLELLAEGQ RLPAPPACPG EVHELMKLCW ENSTTRP00000007331/1-1125 XXXXEFLRMM GCERDVPALC RLLELLADGQ RLPAPPACPG EVHELMKLCW ENSBTAP00000027857/1-1105 SPSAEFLRMM GCERDVPALC RLLELLAEGQ RLPAPPACPS EVHELMKLCW BACU016676/1-1118 SPSAEFLRMM GCERDAPALC RLLELLAEGQ RLPAPPACPG EVHELMKLCW 1101 1150 ENSP00000391676/1-1124 APSPQDRPSF SALGPQLDML WSGSRG--CE THAFTAHPEG KHHSLSFS- bmy_02608T0/1-949 APSPQDRPPF SALGPQLDAL WNGSQG---- ---------- --------- ENSTTRP00000007331/1-1125 APSPQDRPPF SALGPQLDAL WSGSQGCVQR HETLTACLEG EPHSLSFLY ENSBTAP00000027857/1-1105 APNPQDRPSF SALGPQLDAL WSGSRG---- ---------- --------- BACU016676/1-1118 APSPQDRPPF SALGPQLDAL WSGSQG---- ---------- ---------