KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:05 2014 Check: 00 .. Name: ENSTTRP00000000383/1-1015 Len: 1781 Check: 1900 Weight: 1.00 Name: ENSBTAP00000027858/1-1023 Len: 1781 Check: 4836 Weight: 1.00 Name: ENSP00000263773/1-1017 Len: 1781 Check: 2297 Weight: 1.00 Name: bmy_04141T0/1-899 Len: 1781 Check: 5945 Weight: 1.00 Name: BACU008967/1-1770 Len: 1781 Check: 1136 Weight: 1.00 // 1 50 ENSTTRP00000000383/1-1015 MGKKSRAVPG RRPILQLSPP GPRSSTPGRD PDPEPDTEPD SAAAAAAAPS ENSBTAP00000027858/1-1023 MGKKSRAVPG RRPILQLSPP GPRSSTPSRD PEPEPDAEPD S-TAAAAAPS ENSP00000263773/1-1017 MGKKSRAVPG RRPILQLSPP GPRGSTPGRD PEPEPDTEPD S---TAAVPS bmy_04141T0/1-899 MGKKSRAVPG RRPILQLSPP GPRSSTPGRE PEPEPDTEPD S--TAAAAPS BACU008967/1-1770 MGKKSRAVPG RRPILQLSPP GPRSSTPGRD PEPEPDTEPD S-TAAAAAPS 51 100 ENSTTRP00000000383/1-1015 QPAP-ATPTT TTAVT-AAAA PDDSPSE--D EQEVVVEVPR -VQNPPKPVM ENSBTAP00000027858/1-1023 QPAPAAVSTT TTAVTAAAAA SEDSPSEDPD EQEVVVEVPR -VQNPPKPVM ENSP00000263773/1-1017 QPAPSAATTT TTAVT-AAAA SDDSPSE--D EQEAVQEVPR VVQNPPKPVM bmy_04141T0/1-899 QPAPAATTTT TTAVT-AAAA PDDSPSE--D EQEVVVEVPR -VQNPPKPVM BACU008967/1-1770 QTAPVALPT- TTAVT-AAAA PDDSPSE--D EQEVVVEVPR -VQNPPKPVM 101 150 ENSTTRP00000000383/1-1015 TTRPTAVKAT GGLCLLGAYA DSDDEESDVS EKPAQSMEAN GNQSADIDST ENSBTAP00000027858/1-1023 TTRPTAVKAT GGLCLLGAYA DSDDEENDIS EKPAQSKEAN GNQSTDIDST ENSP00000263773/1-1017 TTRPTAVKAT GGLCLLGAYA DSDDDDNDVS EKLAQSKETN GNQSTDIDST bmy_04141T0/1-899 TARPTAVKAT GGLCLLGAYA DSDDEESDVS EKPAQSKEAN GNQSTDIDST BACU008967/1-1770 TARPTAVKAT GGLCLLGAYA DSDDEESDVS EKPAQSKEAN GSQSTDIDST 151 200 ENSTTRP00000000383/1-1015 LANFLAEIDA ITAPQPVAPV GASAPPPTPP RPEPKE-STS ALSSTTPNGT ENSBTAP00000027858/1-1023 LANFLAEIDA ITAPQPAAPG AASAPPPTPP RPEPKE-SAP ALSSTTPNGT ENSP00000263773/1-1017 LANFLAEIDA ITAPQPAAPV GASAPPPTPP RPEPKEAATS TLSSSTSNGT bmy_04141T0/1-899 LANFLAEIDA ITAPQPGAPV GASAPPPTPP RPEPKE-STS ALSSTAPNGT BACU008967/1-1770 LANFLAEIDA ITAPQPGAPV GASAPPPTPP RPEPKE-STS ALSSTAPNGT 201 250 ENSTTRP00000000383/1-1015 DSTQTAGWQY DTQCSLAGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000027858/1-1023 DSTQTAGWQY DTQCSLAGVG IEMGDWQEVW DENTGCYYYW NTQTNEVTWE ENSP00000263773/1-1017 DSTQTSGWQY DTQCSLAGVG IEMGDWQEVW DENTGCYYYW NTQTNEVTWE bmy_04141T0/1-899 DSTQTAGWQY DTQCSLAGVG IEMGDWQEVW DENTGCYYYW NTQTNEVTWE BACU008967/1-1770 DSTQTAGWQY DTQCSLAGVG IEMGDWQEVW DENTGCYYYW NTQTNEVTWE 251 300 ENSTTRP00000000383/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN TDMY-KKKNI SVSSSKSAPV ENSBTAP00000027858/1-1023 LPQYLATQVQ GLQHYQPSCV TGAEASFVVN TDMYAKEKNT SVSSSKSGPV ENSP00000263773/1-1017 LPQYLATQVQ GLQHYQPSSV PGAETSFVVN TDIYSKEKTI SVSSSKSGPV bmy_04141T0/1-899 LPQYLATQVQ GLQHYQPSSV TGAEASFVVN TDMYTKEKNI SVSSSKSAPV BACU008967/1-1770 LPQYLATQVQ GLQHYQPSSV TGAEASFVVN TDMYTKEKNI SVSSSKSAPV 301 350 ENSTTRP00000000383/1-1015 ITKREVKREV NEGIQALSNN EEEKKGVAAS LLAPLLPEGI KEEEERWRRK ENSBTAP00000027858/1-1023 IAKREVKKEV NEGIQALSNN EEEKKGVAAS LLAPLLPEGI KEEEERWRRK ENSP00000263773/1-1017 IAKREVKKEV NEGIQALSNS EEEKKGVAAS LLAPLLPEGI KEEEERWRRK bmy_04141T0/1-899 IAKREVKKEV NEGIQALSNN EEEKKGVAAS LLAPLLPEGI KEEEERWRRK BACU008967/1-1770 IAKREVKKEV NEGIQALSNN EEEKKGVAAS LLAPLLPEGI KEEEERWRRK 351 400 ENSTTRP00000000383/1-1015 VICKEVEPVS EEKETSTT-- EEATIVKPQE SLLDGVEDPT QEDICSVVQS ENSBTAP00000027858/1-1023 VICKEAEPVS EEKETSIT-- EEAAAVKPQE VLLDSVEDPT QEDLCSVVQS ENSP00000263773/1-1017 VICKE-EPVS EVKETSTTVE EATTIVKPQE IMLDNIEDPS QEDLCSVVQS bmy_04141T0/1-899 VICKEVEPVS EEKEASTT-- EEATIVKPQE SLLDGVEDPT QEDLCSVVQS BACU008967/1-1770 VICKEVEPVS EEKETSTT-- EEATIVKPQE SLLDGVEDPT QEDLCSVVQS 401 450 ENSTTRP00000000383/1-1015 GESEEEEEQD TLELELVLER KKAELRALEE GDGSVSGSSP CSDISQPASQ ENSBTAP00000027858/1-1023 GESEEEEEQD TLELELVLER KKAELRALEE GDGSVSGSSP CSDISQPASQ ENSP00000263773/1-1017 GESEEEEEQD TLELELVLER KKAELRALEE GDGSVSGSSP RSDISQPASQ bmy_04141T0/1-899 GESEEEEEQD TLELELVLER KKAELRALEE GDGSVSGSSP CSDISQPASQ BACU008967/1-1770 GESEEEEEQD TLELELVLER KKAELRALEE GDGSVSGSSP CSDISQPASQ 451 500 ENSTTRP00000000383/1-1015 DGMRRLMSKR GKWKMFVRAT SPESTSRSSS KTGRETPENG EIAIGAENSE ENSBTAP00000027858/1-1023 DGMRRLMSKR GKWKMFVRAT SPESTSRSSS KTGRETPENG ETAVGAENSE ENSP00000263773/1-1017 DGMRRLMSKR GKWKMFVRAT SPESTSRSSS KTGRDTPENG ETAIGAENSE bmy_04141T0/1-899 DGMRRLMSKR GKWKMFVRAT SPESTSRSSS KTGRETPENG E-------SE BACU008967/1-1770 DGMRRLMSKR GKWKMFVRAT SPESTSRSSS KTGRETPENG ESVIGAENSE 501 550 ENSTTRP00000000383/1-1015 KVDENSDKEM EVEESPEKIK VQTAPKVEEE QDLKFQIGEL ANTLTSKFEF ENSBTAP00000027858/1-1023 KMDENSEKEM EAEESPEKLK VQTVPKVEEE QDLKFQIGEL ANTLTSKFEF ENSP00000263773/1-1017 KIDENSDKEM EVEESPEKIK VQTTPKVEEE QDLKFQIGEL ANTLTSKFEF bmy_04141T0/1-899 KVDENSDKEM EVEESPEKIK VQTAPKVEEE QDLKFQIGEL ANTLTSKFEF BACU008967/1-1770 KVDENSDKEM EVEESPEKIK VQTAPKVEEE QDLKFQIGEL ANTLTSKFEF 551 600 ENSTTRP00000000383/1-1015 LGINRQSISN FHVLLLQTET RIADWREGAL NGNYLKRKLQ DAAEQLKQYE ENSBTAP00000027858/1-1023 LGINRLSISN FHVLLLQTET RIADWREGAL NGNYLKRKLQ DAAEQLKQYE ENSP00000263773/1-1017 LGINRQSISN FHVLLLQTET RIADWREGAL NGNYLKRKLQ DAAEQLKQYE bmy_04141T0/1-899 LGINRQSISN FHVLLLQTET RIADWREGAL NGNYLKRKLQ DAAEQLKQYE BACU008967/1-1770 LGINRQSISN FHVLLLQTET RIADWREGAL NGNYLKRKLQ DAAEQLKQYE 601 650 ENSTTRP00000000383/1-1015 INATPKGWSC HWDRDHRRYF YVNEQSGESQ WEFPDGEEEE EESQAQESRD ENSBTAP00000027858/1-1023 INATPKGWSC HWDRDHRRYF YVNEQSGESQ WEFPDGEEEE EESQAQESRD ENSP00000263773/1-1017 INATPKGWSC HWDRDHRRYF YVNEQSGESQ WEFPDGEEEE EESQAQENRD bmy_04141T0/1-899 INATPKGWSC HWDRDHRRYF YVNEQSGESQ WEFPDGEEEE EESQAQESRD BACU008967/1-1770 INATPKGWSC HWDRDHRRYF YVNEQSGESQ WEFPDGEEEE EESQAQESRD 651 700 ENSTTRP00000000383/1-1015 ETLPKQTLKD KTGTDSNSTD SSENSTGSLC KESFSGQVSS SSLMPLTPFW ENSBTAP00000027858/1-1023 ETLPKQSLKD KTGTDSNSTE SSENSTGSLC KESFSGQVSS SSLMPLTPFR ENSP00000263773/1-1017 ETLAKQTLKD KTGTDSNSTE SSETSTGSLC KESFSGQVSS SSLMPLTPFW bmy_04141T0/1-899 ETLPKQTLKD KTGTDSNSTD SSENSTGSLC KESFSGQVSS SSLMPLTPFW BACU008967/1-1770 ETLPKQTLKD KTGTDSNSTD SSENSTGSLC KESFSGQVSS SSLMPLTPFW 701 750 ENSTTRP00000000383/1-1015 TLLQSNVPVL QPPLPLEMPP PPPPPPESPP PPPPPPPPAE DGEIQEVEME ENSBTAP00000027858/1-1023 TVLQSDVPVL QPPLPLRWPP CSPTEHSRKP REXPPPPPVE DGEIQEVEME ENSP00000263773/1-1017 TLLQSNVPVL QPPLPLEMPP PPPPPPESPP PPPPPPPPAE DGEIQEVEME bmy_04141T0/1-899 TLLQSNMPVL QPPLPLEMPP PPPPPPESPP PPPPPPPPAE DGEIQEVEME BACU008967/1-1770 TLLQSNVPVL QPPLPLEMPP PPPPPPESPP PPPPPPPPAE DGEIQEVEME 751 800 ENSTTRP00000000383/1-1015 DEGSEEPPAP GTEEDTPLKP SAQTTVVTSQ XXXXXXXXXX XXXXXXXXXX ENSBTAP00000027858/1-1023 DEGSEEPPAP GTEEDTPLKP AAQTTVVTSQ SSADSTISSS PSTKAIKRKA ENSP00000263773/1-1017 DEGSEEPPAP GTEEDTPLKP SAQTTVVTSQ SSVDSTISSS SSTKGIKRKA bmy_04141T0/1-899 DEGSEEPPAP GTEEDTPLKP SAQTTVVTSQ SSADCTISSS PSTKAIKRKA BACU008967/1-1770 DEGSEEPPAP GTEEDTPLKP LAQTTVVTSQ SSADCTISSS PSTKAIKRKA 801 850 ENSTTRP00000000383/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX--XXXXXX XXXXXXXXXX ENSBTAP00000027858/1-1023 TEMSSAVVQR SATIGSSPVL YSQSAVATGQ HCGFSVLGQQ AAGVGHQAIA ENSP00000263773/1-1017 TEISTAVVQR SATIGSSPVL YSQSAIATGH QA--AGIGNQ ATGIGHQTIP bmy_04141T0/1-899 TEISTAAVQR SATIGSSPVL YSQSAVATGH QA--TGIGQQ TAGIGHQALS BACU008967/1-1770 TEISTAAVQR SATIGSSPVL YSQSAVATGH QA--TGIGQQ TAGIGHQALS 851 900 ENSTTRP00000000383/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000027858/1-1023 VSHPATGMGH QARGMNLQSN YLGLASAPAL MGYAECSVPM AVTAPTLQPV ENSP00000263773/1-1017 VSLPAAGMGH QARGMSLQSN YLGLAAAPAI MSYAECSVPI GVTAPSLQPV bmy_04141T0/1-899 ASHPATGMGH QARGMNLQSN YLGLASAPAI MSYAECSVPM AVTAPTLQPV BACU008967/1-1770 ASHPATGMGH QARGMNLQSN YLGLASAPAI MSYAECSVPM AVTAPTLQPV 901 950 ENSTTRP00000000383/1-1015 XXXXXXXXXX XXXXXXXXXX XXXXX----- -------XXX XXXXXXXXXX ENSBTAP00000027858/1-1023 QARAAVPTTA IIEPPPPPPP PPPPP----- -----PPPPA PKMPPPEKTK ENSP00000263773/1-1017 QARGAVPTAT IIEPPPPPPP PPPPP----- -------PPA PKMPPPEKTK bmy_04141T0/1-899 QARGAVPAAA IIEPPPP--- ---------- ---------- ---------- BACU008967/1-1770 QARGAVPAAA IIEPPPPPPP PPPPPXXXXX XXXXXXXXXX XXMPAPEKTK 951 1000 ENSTTRP00000000383/1-1015 XXXXXXAKKS KTKMPSLVKK WQSIQRELDE EENSSSSEED RESTAQKRIE ENSBTAP00000027858/1-1023 KGKKDKAKKS KTKMPSLVKK WQSIQRELDE EENSSSSEED RESTAQKRIE ENSP00000263773/1-1017 KGRKDKAKKS KTKMPSLVKK WQSIQRELDE EDNSSSSEED RESTAQKRIE bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 KGKKYKAKKS KTKMPSLVKK WQSIQRELDE EENSSSSEED RESTAQKRIE 1001 1050 ENSTTRP00000000383/1-1015 EWKQQQLV-- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 EWKQQQLV-- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 EWKQQQLV-- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 EWKQQQLVRS SQTLPDPYED FMYHHLQYYG YFKAERGSLP NSATHQHVWK 1051 1100 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 NNHRYLLSGS FGETADLIPD PLQKEKRLYS LMLNSPLLKS RQLLHDDLGE 1101 1150 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 VNSRLREPRD LFAFFSSSGP LQAPRWPIEC EVIKENIHHI EWVPPQPEYF 1151 1200 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 YQPTGNEKVP EIVGEEKGTV VYQLDSVPSE DSYFTSSRVG GKRGIIKELA 1201 1250 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 VTLQGPEDNT LLFESRFESG NLQKAVRVNT YEYELTLRTD LYTNKHTQWF 1251 1300 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 YFRVQNTRKD VTYRFTIVNL LKPKSLYTIG MKPLMYSQLD ASTHSIGWRR 1301 1350 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 EGDEIRYYRN NTEDGQQPFY CLTWTIQFPH DQDTCFFAHF YPYTYTDLQC 1351 1400 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 FLLSVANSPV QSQFCKLRTL CRSLAGNTVY LLTITNPART PQEAAAKKAV 1401 1450 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 VLTARVHPGE SNGSWIMKGF LDFILSNSPD AQLLRDIFIF KVVPMLNPDG 1451 1500 ENSTTRP00000000383/1-1015 -------SGM AERNANF--- ----EALPED WRAR------ ---------- ENSBTAP00000027858/1-1023 -------SGM AERNANF--- ----EALPED WRAR------ ---------- ENSP00000263773/1-1017 -------SGM AERNANF--- ----EALPED WRAR------ ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 VIVGNYRCSL AGRDLNRHYK TILKESFPCI WHTRNMIKRL LEEREVLLYC 1501 1550 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 DFHGHSRKNN IFLYGCNNND RKFWLHERVF PLMLSKNAPD KFSFHSCNFK 1551 1600 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 VQKCKEGTGR VVMWRMGILN SYTMESTFGG STLGNKRDTH FTPEDLKSLG 1601 1650 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 YHVCDTLLDF CDPDRTKFMQ CLAELKELLQ QEIHKKFKEL GQDMDLEGSW 1651 1700 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 SDISLSDIES RYFPFSFPFG NSTSGSDSSL SDGLPVHLLN TADELNQKKK 1701 1750 ENSTTRP00000000383/1-1015 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027858/1-1023 ---------- ---------- ---------- ---------- ---------- ENSP00000263773/1-1017 ---------- ---------- ---------- ---------- ---------- bmy_04141T0/1-899 ---------- ---------- ---------- ---------- ---------- BACU008967/1-1770 MYKKKKRKPL QSRKQRNKQY QKSNLMQESK LTEDAPHPLQ DVCGWLKPYP 1751 1800 ENSTTRP00000000383/1-1015 ---------- ---------- -LKRRKMAPN T ENSBTAP00000027858/1-1023 ---------- ---------- -LKRRKMAPN T ENSP00000263773/1-1017 ---------- ---------- -LKRRKMAPN T bmy_04141T0/1-899 ---------- ---------- ---------- - BACU008967/1-1770 TTETWSLPTA TPILLPPDAS SVRKRRRNCC S