KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:05 2014 Check: 00 .. Name: ENSTTRP00000000710/1-306 Len: 309 Check: 8481 Weight: 1.00 Name: ENSP00000229307/1-305 Len: 309 Check: 2595 Weight: 1.00 Name: ENSBTAP00000027863/1-300 Len: 309 Check: 6990 Weight: 1.00 Name: bmy_05546T0/1-307 Len: 309 Check: 6637 Weight: 1.00 Name: BACU017024/1-283 Len: 309 Check: 775 Weight: 1.00 // 1 50 ENSTTRP00000000710/1-306 MSVDPACPQS LRGPEASNSR ESSPVPEIYG PEENYVSLQM SSAETHDMET ENSP00000229307/1-305 MSVDPACPQS LPCFEASDCK ESSPMPVICG PEENYPSLQM SSAEMPHTET ENSBTAP00000027863/1-300 MSVGPACPQS LLGPEASNSR ESSPM----- PEESYVSLQT SSADTLDTDT bmy_05546T0/1-307 MSVDPACPQS LRGPEASNSR ESSPMPEIYG PEENYVSLQM SSAETHDMET BACU017024/1-283 ---------- ---------- ----MPEIYG PEENYVSLQM SSVETHDMET 51 100 ENSTTRP00000000710/1-306 XXXXX--XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000229307/1-305 VSPLPS-SMD LLIQDSPDSS TSPKGKQ-PT SAEKSVAKKE DKVPVKKQKT ENSBTAP00000027863/1-300 VSPLPS-SMD LLIQDSPDSS TSPRVKPLSP SVEESTE-KE ETVPVKKQKI bmy_05546T0/1-307 VSPLPSFSMD LLIQDSPDSS TSPRVKLLAT AADKSTEKKE EKVLIKKQKT BACU017024/1-283 VSPLPSFSMD LLIQDSPDSS TSPRVKLLAT AADKSTEKKE EKVLIKKQKT 101 150 ENSTTRP00000000710/1-306 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VKTWFQNQRM ENSP00000229307/1-305 RTVFSSTQLC VLNDRFQRQK YLSLQQMQEL SNILNLSYKQ VKTWFQNQRM ENSBTAP00000027863/1-300 RTVFSQTQLC VLNDRFQRQK YLSLQQMQEL SNILNLSYKQ VKTWFQNQRM bmy_05546T0/1-307 RTVFSQTQLC VLNDRFQRQK YLSLQQMQEL SNILNLSYKQ VKTWFQNQRM BACU017024/1-283 RTVFSQTQLC VLNDRFQRQK YLSLQQMQEL SNILNLSYKQ VKTWFQNQRM 151 200 ENSTTRP00000000710/1-306 KCKRWQKNNW PRNSNIVTQK GPATTEYPGF Y-SYHQGCLV NSSGNLPMWG ENSP00000229307/1-305 KSKRWQKNNW PKNSNGVTQ- KASAPTYPSL YSSYHQGCLV NPTGNLPMWS ENSBTAP00000027863/1-300 KCKKWQKNNW PRNSNGMPQ- GPAMAEYPGF Y-SYHQGCLV NSPGNLPMWG bmy_05546T0/1-307 KCKRWQKNNW PRNSNTVTQ- GPATTEYPGF Y-SYHQGCLA NSSGNLPMWG BACU017024/1-283 KCKRWQKNNW PRNSNTVTQ- GPATTEYPGF Y-SYHQGCLA NSSGNLPMWG 201 250 ENSTTRP00000000710/1-306 NQTWNNPTWS NQSWNSQSWN NQSWNSQTWC PQAWNNQTWN NQFNNYVEEF ENSP00000229307/1-305 NQTWNNSTWS NQTQNIQSWS NHSWNTQTWC TQSWNNQAWN SPFYNCGEES ENSBTAP00000027863/1-300 NQTWNNPTWS NQSWNSQSWS NHSWNSQAWC PQAWNNQPWN NQFNNYMEEF bmy_05546T0/1-307 NQTWNNPTWS NQSWNSQSWS NHPWNNQTWC PQAWNNQTWN NQFNNYVEEF BACU017024/1-283 NQTWNNPTWS NQSWNSQSWS NHPWNNQTWC PQAWNNQTSN NQFNNYVEEF 251 300 ENSTTRP00000000710/1-306 LQPQIQYQQS SPVSDLEATL ETAGEGYNII QQTAKYFNSQ QQIMDLFPNY ENSP00000229307/1-305 LQSCMQFQPN SPASDLEAAL EAAGEGLNVI QQTTRYFSTP QT-MDLFLNY ENSBTAP00000027863/1-300 LQPGIQLQQN SPVCDLEATL GTAGENYNVI QQTVKYFNSQ QQITDLFPNY bmy_05546T0/1-307 LQPQIQFQQN SPVSDLEATL ETAGESYNII QQTAKYFNSQ QQIMDLFPNY BACU017024/1-283 LQPQTQFQQN SPVSDLEATL ETAGESYNII QQTAKYFNSQ QQIMDLFPNY 301 350 ENSTTRP00000000710/1-306 SLNIQPEDL ENSP00000229307/1-305 SMNMQPEDV ENSBTAP00000027863/1-300 PLNIQPEDL bmy_05546T0/1-307 SLNIQPEDL BACU017024/1-283 SLNIQPEDL