KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:06 2014 Check: 00 .. Name: ENSTTRP00000010948/1-1112 Len: 1130 Check: 981 Weight: 1.00 Name: ENSP00000262803/1-1118 Len: 1130 Check: 5372 Weight: 1.00 Name: ENSBTAP00000027868/1-1127 Len: 1130 Check: 8013 Weight: 1.00 Name: bmy_02642T0/1-1116 Len: 1130 Check: 7227 Weight: 1.00 Name: BACU016643/1-1083 Len: 1130 Check: 3404 Weight: 1.00 // 1 50 ENSTTRP00000010948/1-1112 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTP--- ENSP00000262803/1-1118 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTPPGG ENSBTAP00000027868/1-1127 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTP--- bmy_02642T0/1-1116 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTP--- BACU016643/1-1083 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTP--- 51 100 ENSTTRP00000010948/1-1112 PGGPGGGGAG APVCAGPGAA AGQLDAQVGG PEGILQNGAV DDSVAKTSQL ENSP00000262803/1-1118 PGGPGGGGAG GPGGAGAGAA AGQLDAQV-G PEGILQNGAV DDSVAKTSQL ENSBTAP00000027868/1-1127 PGGPGGGGAG APVGAGPGAA AGQLDAQVGG PEGILQNGAV DDSVAKTSQL bmy_02642T0/1-1116 PGGPGGGGAG APVCAGPGAA AGQLDAQVGG PEGILQNGAV DDSVAKTSQL BACU016643/1-1083 PGGPGGGGAG APVCAGPGAA AGQLDAQVGG PEGILQNGAV DDSVAKTSQL 101 150 ENSTTRP00000010948/1-1112 LAELNFEEDE EDTYYTKDLP IHACSYCGIH DPACVVYCNT SKKWFCNGRG ENSP00000262803/1-1118 LAELNFEEDE EDTYYTKDLP IHACSYCGIH DPACVVYCNT SKKWFCNGRG ENSBTAP00000027868/1-1127 LAELNFEEDE EDTYYTKDLP VHACSYCGIH DPACVVYCNT SKKWFCNGRG bmy_02642T0/1-1116 LAELNFEEDE EDTYYTKDLP IHACSYCGIH DPACVVYCNT SKKWFCNGRG BACU016643/1-1083 LAELNFEEDE EDTYYTKDLP IHACSYCGIH DPACVVYCNT SKKWFCNGRG 151 200 ENSTTRP00000010948/1-1112 NTSGSHIGNH LVRAKCKEVT LHKDGPXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000262803/1-1118 NTSGSHIVNH LVRAKCKEVT LHKDGPLGET VLECYNCGCR NVFLLGFIPA ENSBTAP00000027868/1-1127 NTSGSHIVNH LVRAKCKEVT LHKDGPLGET VLECYNCGCR NVFLLGFIPA bmy_02642T0/1-1116 NTSGSHIVNH LVRAKCKEVT LHKDGPLGET VLECYNCGCR NVFLLGFIPA BACU016643/1-1083 NTSGSHIVNH LVRAKCKEVT LHKDGPLGET VLECYNCGCR NVFLLGFIPA 201 250 ENSTTRP00000010948/1-1112 XXXXXXXXXX XQPCASQSSL KDINW-SSQW Q-LIQDRCFL SWLVI--SEQ ENSP00000262803/1-1118 KADSVVVLLC RQPCASQSSL KDINWDSSQW QPLIQDRCFL SWLVKIPSEQ ENSBTAP00000027868/1-1127 KADSVVVLLC RQPCASQSSL KDINWDSSQW QPLIQDRCFL SWLVKIPSEQ bmy_02642T0/1-1116 KADSVVVLLC RQPCASQSSL KDINWDSSQW QPLIQDRCFL SWLVKIPSEQ BACU016643/1-1083 KADSVVVLLC RQPCASQSSL KDINWDSSQW QPLIQDRCFL SWLVKIPSEQ 251 300 ENSTTRP00000010948/1-1112 EQLRARQITA QQINKLEELC KENPSATLED LEKPGVDEEP QHVLLRYEDA ENSP00000262803/1-1118 EQLRARQITA QQINKLEELW KENPSATLED LEKPGVDEEP QHVLLRYEDA ENSBTAP00000027868/1-1127 EQLRARQITA QQINKLEELW KENPSATLED LEKPGVDEEP QHVLLRYEDA bmy_02642T0/1-1116 EQLRARQITA QQINKLEELW KENPSATLED LEKPGVDEEP QHVLLRYEDA BACU016643/1-1083 EQLRARQITA QQINKLEELW KENPSATLED LEKPGVDEEP QHVLLRYEDA 301 350 ENSTTRP00000010948/1-1112 YQYQNIFGPL VKLEADYDKK LKESQTQDNI TVRWDLGLNK KRIAYFTLPK ENSP00000262803/1-1118 YQYQNIFGPL VKLEADYDKK LKESQTQDNI TVRWDLGLNK KRIAYFTLPK ENSBTAP00000027868/1-1127 YQYQNIFGPL VKLEADYDKK LKESQTQDNI TVRWDLGLNK KRIAYFTLPK bmy_02642T0/1-1116 YQYQNIFGPL VKLEADYDKK LKESQTQDNI TVRWDLGLNK KRIAYFTLPK BACU016643/1-1083 YQYQNIFGPL VKLEADYDKK LKESQTQDNI TVRWDLGLNK KRIAYFTLPK 351 400 ENSTTRP00000010948/1-1112 TDS------- ----DMRLMQ GDEICLRYKG DLAPLWKGIG HVIKVPDNYG ENSP00000262803/1-1118 TDS------- ----DMRLMQ GDEICLRYKG DLAPLWKGIG HVIKVPDNYG ENSBTAP00000027868/1-1127 TDSGNEDLVI IWLRDMRLMQ GDEICLRYKG DLAPLWKGIG HVIKVPDNYG bmy_02642T0/1-1116 TDS------- ----DMRLMQ GDEICLRYKG DLAPLWKGIG HVIKVPDNYG BACU016643/1-1083 TDS------- ----D----- ---------- ---------- --------YG 401 450 ENSTTRP00000010948/1-1112 DEIAIELRSS VGAPVEVTHN FQVDFVWKST SFDRMQSALK TFAVDETSVS ENSP00000262803/1-1118 DEIAIELRSS VGAPVEVTHN FQVDFVWKST SFDRMQSALK TFAVDETSVS ENSBTAP00000027868/1-1127 DEIAIELRSS VGAPVEVTHN FQVDFVWKST SFDRMQSALK TFAVDETSVS bmy_02642T0/1-1116 DEIAIELRSS VGAPVEVTHN FQVDFVWKST SFDRMQSALK TFAVDETSVS BACU016643/1-1083 DEIAIELRSS VGAPVEVTHN FQVDFVWKST SFDRMQSALK TFAVDETSVS 451 500 ENSTTRP00000010948/1-1112 GYIYHKLLGH EVEDVIIKCQ LPKRFTAQGL PDLNHSQVYA VKTVLQRPLS ENSP00000262803/1-1118 GYIYHKLLGH EVEDVIIKCQ LPKRFTAQGL PDLNHSQVYA VKTVLQRPLS ENSBTAP00000027868/1-1127 GYIYHKLLGH EVEDVIIKCQ LPKRFTAQGL PDLNHSQVYA VKTVLQRPLS bmy_02642T0/1-1116 GYIYHKLLGH EVEDVIIKCQ LPKRFTAQGL PDLNHSQVYA VKTVLQRPLS BACU016643/1-1083 GYIYHKLLGH EVEDVIIKCQ LPKRFTAQGL PDLNHSQVYA VKTVLQRPLS 501 550 ENSTTRP00000010948/1-1112 LIQGPPGTGK TVTSATIVYH LARQGNGPVL VCAPSNIAVD QLTEKIHQTG ENSP00000262803/1-1118 LIQGPPGTGK TVTSATIVYH LARQGNGPVL VCAPSNIAVD QLTEKIHQTG ENSBTAP00000027868/1-1127 LIQGPPGTGK TVTSATIVYH LARQGNGPVL VCAPSNIAVD QLTEKIHQTG bmy_02642T0/1-1116 LIQGPPGTGK TVTSATIVYH LARQGNGPVL VCAPSNIAVD QLTEKIHQTG BACU016643/1-1083 LIQGPPGTGK TVTSATIVYH LARQGNGPVL VCAPSNIAVD QLTEKIHQTG 551 600 ENSTTRP00000010948/1-1112 LKVVRLCAKS REAIDSPVSF LALHNQIRNM DSMPELQKLQ QLKDETGELS ENSP00000262803/1-1118 LKVVRLCAKS REAIDSPVSF LALHNQIRNM DSMPELQKLQ QLKDETGELS ENSBTAP00000027868/1-1127 LKVVRLCAKS REAIDSPVSF LALHNQIRNM DSMPELQKLQ QLKDETGELS bmy_02642T0/1-1116 LKVVRLCAKS REAIDSPVSF LALHNQIRNM DSMPELQKLQ QLKDETGELS BACU016643/1-1083 LKVVRLCAKS REAIDSPVSF LALHNQIRNM DSMPELQKLQ QLKDETGELS 601 650 ENSTTRP00000010948/1-1112 SADEKRYRAL KRTAERELLM NADVICCTCV GAGDPRLAKM QFRSILIDES ENSP00000262803/1-1118 SADEKRYRAL KRTAERELLM NADVICCTCV GAGDPRLAKM QFRSILIDES ENSBTAP00000027868/1-1127 SADEKRYRAL KRTAERELLM NADVICCTCV GAGDPRLAKM QFRSILIDES bmy_02642T0/1-1116 SADEKRYRAL KRTAERELLM NADVICCTCV GAGDPRLAKM QFRSILIDES BACU016643/1-1083 SADEKRYRAL KRTAERELLM NADVICCTCV GAGDPRLAKM QFRSILIDES 651 700 ENSTTRP00000010948/1-1112 TQATEPECMV PVVLGAKQLI LVGDHCQLGP VVMCKKAAKA GLSQSLFERL ENSP00000262803/1-1118 TQATEPECMV PVVLGAKQLI LVGDHCQLGP VVMCKKAAKA GLSQSLFERL ENSBTAP00000027868/1-1127 TQATEPECMV PVVLGAKQLI LVGDHCQLGP VVMCKKAAKA GLSQSLFERL bmy_02642T0/1-1116 TQATEPECMV PVVLGAKQLI LVGDHCQLGP VVMCKKAAKA GLSQSLFERL BACU016643/1-1083 TQATEPECMV PVVLGAKQLI LVGDHCQLGP VVMCKKAAKA GLSQSLFERL 701 750 ENSTTRP00000010948/1-1112 VVLGIRPIRL QVQYRMHPAL SAFPSNIFYE GSLQNGVTAA DRVKKGFDFQ ENSP00000262803/1-1118 VVLGIRPIRL QVQYRMHPAL SAFPSNIFYE GSLQNGVTAA DRVKKGFDFQ ENSBTAP00000027868/1-1127 VVLGIRPIRL QVQYRMHPAL SAFPSNIFYE GSLQNGVTAA DRVKKGFDFQ bmy_02642T0/1-1116 VVLGIRPIRL QVQYRMHPAL SAFPSNIFYE GSLQNGVTAA DRVKKGFDFQ BACU016643/1-1083 VVLGIRPIRL QVQYRMHPAL SAFPSNIFYE GSLQNGVTAA DRVKKGFDFQ 751 800 ENSTTRP00000010948/1-1112 WPQPDKPMFF YVTQGQEEIA SSGTSYLNRT EAANVEKITT KLLKAGAKPD ENSP00000262803/1-1118 WPQPDKPMFF YVTQGQEEIA SSGTSYLNRT EAANVEKITT KLLKAGAKPD ENSBTAP00000027868/1-1127 WPQPDKPMFF YVTQGQEEIA SSGTSYLNRT EAANVEKITT KLLKAGAKPD bmy_02642T0/1-1116 WPQPDKPMFF YVTQGQEEIA SSGTSYLNRT EAANVEKITT KLLKAGAKPD BACU016643/1-1083 WPQPDKPMFF YVTQGQEEIA SSGTSYLNRT EAANVEKITT KLLKAGAKPD 801 850 ENSTTRP00000010948/1-1112 QIGIITPYEG QRSYLVQYMQ FSGSLHTKLY QEVEIASVDA FQGREKDFII ENSP00000262803/1-1118 QIGIITPYEG QRSYLVQYMQ FSGSLHTKLY QEVEIASVDA FQGREKDFII ENSBTAP00000027868/1-1127 QIGIITPYEG QRSYLVQYMQ FSGSLHTKLY QEVEIASVDA FQGREKDFII bmy_02642T0/1-1116 QIGIITPYEG QRSYLVQYMQ FSGSLHTKLY QEVEIASVDA FQGREKDFII BACU016643/1-1083 QIGIITPYEG QRSYLVQYMQ FSGSLHTKLY QEVEIASVDA FQGREKDFII 851 900 ENSTTRP00000010948/1-1112 LSCVRANEHQ GIGFLNDPRR LNVALTRARY GVIIVGNPKA LSKQPLWNHL ENSP00000262803/1-1118 LSCVRANEHQ GIGFLNDPRR LNVALTRARY GVIIVGNPKA LSKQPLWNHL ENSBTAP00000027868/1-1127 LSCVRANEHQ GIGFLNDPRR LNVALTRARY GVIIVGNPKA LSKQPLWNHL bmy_02642T0/1-1116 LSCVRANEHQ GIGFLNDPRR LNVALTRARY GVIIVGNPKA LSKQPLWNHL BACU016643/1-1083 LSCVRANEHQ GIGFLNDPRR LNVALTRARY GVIIVGNPKA LSKQPLWNHL 901 950 ENSTTRP00000010948/1-1112 LNYYKEQKVL VEGPLNNLRE SLMQFSKPRK LVNTINPGAR FMTTAMYDAR ENSP00000262803/1-1118 LNYYKEQKVL VEGPLNNLRE SLMQFSKPRK LVNTINPGAR FMTTAMYDAR ENSBTAP00000027868/1-1127 LNYYKEQKVL VEGPLNNLRE SLMQFSKPRK LVNTINPGAR FMTTAMYDAR bmy_02642T0/1-1116 LNYYKEQKVL VEGPLNNLRE SLMQFSKPRK LVNTINPGAR FMTTAMYDAR BACU016643/1-1083 LNYYKEQKVL VEGPLNNLRE SLMQFSKPRK LVNTINPGAR FMTTAMYDAR 951 1000 ENSTTRP00000010948/1-1112 EAIIPGSVYD RSSQGRPSNM YFQTHDQIGM ISAGPSHVAA MNIPIPFNLV ENSP00000262803/1-1118 EAIIPGSVYD RSSQGRPSSM YFQTHDQIGM ISAGPSHVAA MNIPIPFNLV ENSBTAP00000027868/1-1127 EAIIPGSVYD RSSQGRPSNM YFQTHDQIGM ISAGPSHVAA MNIPIPFNLV bmy_02642T0/1-1116 EAIIPGSVYD RSSQGRPSNM YFQTHDQIGM ISAGPSHVAA MNIPIPFNLV BACU016643/1-1083 EAIIPGSVYD RSSQGRPSNM YFQTHDQIGM ISAGPSHVAA MNIPIPFNLV 1001 1050 ENSTTRP00000010948/1-1112 MPPMPPPGYF GQANGPAAGR GTPKGKTGRG GRQKNRFGLP GPSQTNLPNS ENSP00000262803/1-1118 MPPMPPPGYF GQANGPAAGR GTPKGKTGRG GRQKNRFGLP GPSQTNLPNS ENSBTAP00000027868/1-1127 MPPMPPPGYF GQANGPAAGR GTPKGKTGRG GRQKNRFGLP GPSQTNLPNS bmy_02642T0/1-1116 MPPMPPPGYF GQANGPAAGR GTPKGKTGRG GRQKNRFGLP GPSQTNLPNS BACU016643/1-1083 MPPMPPPGYF GQANGPAAGR GTPKGKTGRG GRQKNRFGLP GPSQTNLPNS 1051 1100 ENSTTRP00000010948/1-1112 QASQDVASQP FSQGALTQGY ISMSQPSQMS QPGLSQPELS QDSYLGDEFK ENSP00000262803/1-1118 QASQDVASQP FSQGALTQGY ISMSQPSQMS QPGLSQPELS QDSYLGDEFK ENSBTAP00000027868/1-1127 QASQDVASQP FSQGALTQGY ISMSQPSQMS QPGLSQPELS QDSYLGDEFK bmy_02642T0/1-1116 QASQDVASQP FSQGALTQGY ISMSQPSQMS QPGLSQPELS QDSYLGDEFK BACU016643/1-1083 QASQDVASQP FSQGALTQGY ISMSQPSQMS QPGLSQPELS QDSYLGDEFK 1101 1150 ENSTTRP00000010948/1-1112 SQIDVALSQD STYQGERAYQ HGGVTGLSQY ENSP00000262803/1-1118 SQIDVALSQD STYQGERAYQ HGGVTGLSQY ENSBTAP00000027868/1-1127 SQIDVALSQD STYQGERAYQ HGGVTGLSQY bmy_02642T0/1-1116 SQIDVALSQD STYQGERAYQ HGGVTGLSQY BACU016643/1-1083 SQIDVALSQD STYQGERAYQ HGGVTGLSQY