KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:08 2014 Check: 00 .. Name: ENSTTRP00000016234/1-280 Len: 300 Check: 6588 Weight: 1.00 Name: bmy_18133T0/1-271 Len: 300 Check: 2488 Weight: 1.00 Name: BACU007382/1-247 Len: 300 Check: 4208 Weight: 1.00 Name: ENSP00000308533/1-280 Len: 300 Check: 3851 Weight: 1.00 Name: ENSBTAP00000027878/1-281 Len: 300 Check: 8815 Weight: 1.00 // 1 50 ENSTTRP00000016234/1-280 MRWVGQTALK TMAWVPAESA VEELMPRLLP VEPCDLTDSF DPNVPPRTPQ bmy_18133T0/1-271 MRWVGQAGLK TMAWVPAESA VEELMPRLLP VEPCDLTDSF DPNVPPRTPQ BACU007382/1-247 MRWVGQAGLK TMAWVPAESA VEELMPRLLP VEPCDLTDSF DPNVPPRTPQ ENSP00000308533/1-280 MRRAELAGLK TMAWVPAESA VEELMPRLLP VEPCDLTEGF DPSVPPRTPQ ENSBTAP00000027878/1-281 MRWVGRSSLK TMAWVPAESA VEELMPRLLP VEPCDLTESF DPSVPPRTPQ 51 100 ENSTTRP00000016234/1-280 EYLRRVQIEA AHCPDVVVAX XXXXXXXXXX XXXXXLSGCQ PAPEGYSPTL bmy_18133T0/1-271 EYLRRVQIEA AQCPDVVVAQ IDPKKLKRKQ SVNVSLSGCQ PAPEGYSPTL BACU007382/1-247 EYLRRVQIEA AQCPDVVVAQ IDPKKLKRKQ SVNVSLSGCQ PAPEGYSPTL ENSP00000308533/1-280 EYLRRVQIEA AQCPDVVVAQ IDPKKLKRKQ SVNISLSGCQ PAPEGYSPTL ENSBTAP00000027878/1-281 EYLRRVQIEA AQCPDVVVAQ IDPKKLKRKQ SVNISLSGCQ PAPEGYSPTL 101 150 ENSTTRP00000016234/1-280 QWQQQQVAQF STVRQSVNRH RSHWKSQQLD SNVTMPKSED EEGWKKFCLG bmy_18133T0/1-271 QWQQQQVAQF STVRQSVNRH RSHWKSQQLD SNVTMPKSED EEGWKKFCLG BACU007382/1-247 QWQQQQVAQF STVRQSVNRH RSHWKSQQLD SNVTMPKSED EEGWKKFCLG ENSP00000308533/1-280 QWQQQQVAQF STVRQNVNKH RSHWKSQQLD SNVTMPKSED EEGWKKFCLG ENSBTAP00000027878/1-281 QWQQQQVAQF STVRQSVNRH RSHWKSQQLD SNVTMPRSED EEGWKKFCLG 151 200 ENSTTRP00000016234/1-280 ERLYAEGAVG PAASESPGID YVQIGFPPLL SIVSRMNQAT VTSVLEYLSN bmy_18133T0/1-271 ERLYAEGAVG PTASESPGID YVQIGFPPLL SIVSRMNQ-- ---------- BACU007382/1-247 ERLYAEGAVA PAASESPGID YVQ------- ---------- ---------- ENSP00000308533/1-280 EKLCADGAVG PATNESPGID YVQIGFPPLL SIVSRMNQAT VTSVLEYLSN ENSBTAP00000027878/1-281 ERLCAEGAIG PPASESPGID YVQIGFPPLL SIVSRMNQAT VTSVLEYLNN 201 250 ENSTTRP00000016234/1-280 WFGERDFTPE LXXXXXXXXX XXXXXLLPEA HSLIRQLARR CSEVRLLVDS bmy_18133T0/1-271 ---------- -GRWLYALLA CLEKPLLPEA HSLIRQLARR CSEVRLLV-- BACU007382/1-247 ---------- -GRWLYALLA CLEKPLLPEA HSLIRQLARR CSEVRLLVDS ENSP00000308533/1-280 WFGERDFTPE LGRWLYALLA CLEKPLLPEA HSLIRQLARR CSEVRLLVDS ENSBTAP00000027878/1-281 WFGERDFTPE LGRWLYALLA CLEKPLLPEA HSLIRQLARR CSEVRLLVDS 251 300 ENSTTRP00000016234/1-280 KDDERVPALN LL-----ICL V-SRYFDQRD LADEPS---- ---------- bmy_18133T0/1-271 ----LIWIFP LLCYQQEVCF IHIVKFLAHK GIEYADIIEV TAKMMRGFLL BACU007382/1-247 KDDERVPALN LL-----ICL VSRKSRGAGV GSVTPRYQGL ---------- ENSP00000308533/1-280 KDDERVPALN LL-----ICL V-SRYFDQRD LADEPS---- ---------- ENSBTAP00000027878/1-281 KDDERVPALN LL-----ICL VSSRYFDQRD LADEPS---- ----------