KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:34:10 2014 Check: 00 .. Name: ENSP00000300589/1-1040 Len: 1040 Check: 3277 Weight: 1.00 Name: ENSTTRP00000012696/1-1038 Len: 1040 Check: 1484 Weight: 1.00 Name: ENSBTAP00000027887/1-1013 Len: 1040 Check: 4324 Weight: 1.00 Name: bmy_04249T0/1-943 Len: 1040 Check: 797 Weight: 1.00 // 1 50 ENSP00000300589/1-1040 MGEEGGSASH DEEERASVLL GHSPGCEMCS QEAFQAQRSQ LVELLVSGSL ENSTTRP00000012696/1-1038 TGGEGGPGSP DAEERTAVLL RHPLNCEMYT QDAFQAQRSQ LVELLVSGSL ENSBTAP00000027887/1-1013 ---------- ---------- -------MCA QDAFQTQRSQ LVELLVSGSL bmy_04249T0/1-943 ---------- ---------- -------MYT QDAFQAQRSQ LVELLVSGSL 51 100 ENSP00000300589/1-1040 EGFESVLDWL LSWEVLSWED YEGFHLLGQP LSHLARRLLD TVWNKGTWAC ENSTTRP00000012696/1-1038 EGFESVLDWL LSWEVLSWED YEGLSLLGQP VSHLARRLLD TVWNKGAWGC ENSBTAP00000027887/1-1013 EGFESILDRL LSREVLSWED YEGLSLVGQP ISHLARRLLD TIWNKGTWGC bmy_04249T0/1-943 EGFESVLDWL LSWEVLSWED YEGLSLLGQP VSHLARRLLD TVWNKGAWGC 101 150 ENSP00000300589/1-1040 QKLIAAAQEA QADSQSPKLH GCWDPHSLHP ARDLQSHRPA IVRRLHSHVE ENSTTRP00000012696/1-1038 ELLTAAVRET QADRQPPELP GCWEPHSPHP AR-LQSHRPA IVRRLHGHVE ENSBTAP00000027887/1-1013 EQLTAAVREA QADSQPPELP SSWDPHSPHP ARDLQSHRPA IVRRLYGHVE bmy_04249T0/1-943 ELLTAAVQET QADRQPPELP SCWEPHSPHP ARDLQSHRPA IVRRLYGHVE 151 200 ENSP00000300589/1-1040 NMLDLAWERG FVSQYECDEI RLPIFTPSQR ARRLLDLATV KANGLAAFLL ENSTTRP00000012696/1-1038 GVLDLTQARG FISRYECDEI RRPIFTSSQR ARRLLDLATV KANGLAAFLL ENSBTAP00000027887/1-1013 GVLDLTQQRG FISQYETDEI RRPIFTSSQR ARRLLDLATV KANGLAAFLL bmy_04249T0/1-943 GVLDLTQARG FISQYECDEI RRPIFTSSQR V-RLFPLGSS EFKGKACLVT 201 250 ENSP00000300589/1-1040 QHVQELPVPL ALPLEAATCK KYMAKLRTTV SAQSRFLSTY DGAETLCLED ENSTTRP00000012696/1-1038 QCVQELPVPL ALPFEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXCLE- ENSBTAP00000027887/1-1013 QCIQELPVPL ALPFEDAACK KYVSKLRTVI SAQSRFLSTY DGAENLCLEE bmy_04249T0/1-943 ET-------- -----DAACK RYMSKLRTTV LAQSRFLSTY DGTENLCLEE 251 300 ENSP00000300589/1-1040 IYTENVLEVW ADVGMAGPPQ KSPATLGLEE LFSTPGHLND DADTVLVVGE ENSTTRP00000012696/1-1038 IYTENVLEIR TDVCMAGPLQ QSPATLGLEE LFSTRGHLNE DADTVLVVGE ENSBTAP00000027887/1-1013 VYTENVLEIQ MEVGMAGPSQ QSPTTLGLEE LFSTRDHFNK EADTVLVVGE bmy_04249T0/1-943 IYTENALEIR MEADMAGPLQ QSPATLGLEE LFSTRGHLNE DADTVLVVGE 301 350 ENSP00000300589/1-1040 AGSGKSTLLQ RLHLLWAAGQ DFQEFLFVFP FSCRQLQCMA KPLSVRTLLF ENSTTRP00000012696/1-1038 AGSGKSTLLQ QLHLLWASGR AFQEFIFVFP FSCRQLQCLA KPLSVWTLLF ENSBTAP00000027887/1-1013 AGSGKSTLLQ QLHLLWASGR AFQEFLFVFP FSCRQLQCLV KPLSMRTLLF bmy_04249T0/1-943 AGSGKSTLLQ QVHLLWASGR AFQEFIFVFP FSCRQLQCLA KPLSVWTLLF 351 400 ENSP00000300589/1-1040 EHCCWPDVGQ EDIFQLLLDH PDRVLLTFDG FDEFKFRFTD RERHCSPTDP ENSTTRP00000012696/1-1038 EHCCWPDLGQ QDVFQVLLDH PERILLTFDG FDEFRFRFTD RDRHCCPTAP ENSBTAP00000027887/1-1013 EHCCWPDLGP QDVFQVLLDH PERILLTFDG FDEFRFRFTD QERHCCPTAP bmy_04249T0/1-943 EHCCWPDLGQ QDVFQVLLDH PERILLTFDG FDEFRFRFVD RERHCCPTAP 401 450 ENSP00000300589/1-1040 TSVQTLLFNL LQGNLLKNAR KVVTSRPAAV SAFLRKYIRT EFNLKGFSEQ ENSTTRP00000012696/1-1038 TSVQSLLFNL LQGNLLKNAR KVLTSRPDAV SASLRKHVRT ELNLKGFSEE ENSBTAP00000027887/1-1013 TSVQSLLFNL LQGNLLKNAR KVLTSRPSAV SASLRKHVRT ELSLKGFSEE bmy_04249T0/1-943 TSVQSLLFNL LQGNLLKNAR KVLTSRPDAV SASLRKHVRT ELSLKGFSEE 451 500 ENSP00000300589/1-1040 GIELYLRKRH HEPGVADRLI RLLQETSALH GLCHLPVFSW MVSKCHQELL ENSTTRP00000012696/1-1038 GIELYLRKRH REPGEAERLI CCLRATSALH SLCHLPVFSW MVSKCHRELL ENSBTAP00000027887/1-1013 GIELYLRKRH REPGVADRLL CLLRATSALH GLCHLPVFSW MVSKCHEELL bmy_04249T0/1-943 GIELYLRKRH REPGVADRLI RLLRATSALH SLCHLPVFSW MVSKCHQELL 501 550 ENSP00000300589/1-1040 LQEGGSPKTT TDMYLLILQH FLLHATPPDS ASQGLGPSLL RGRLPTLLHL ENSTTRP00000012696/1-1038 LQGGVSPKTT TDMYLLILQH FLLHASPPDS AAHGLGAGLL RGSLLTLLHL ENSBTAP00000027887/1-1013 LQGRGSPKTT TDMYLLILRH FLLHASPLPL ATHGLGPSLI QGRLPTLLHL bmy_04249T0/1-943 LQGGGSPKTT TDMYLLILQH FLLRASPPDS AAHGLGAGLL RGRFLTLLHL 551 600 ENSP00000300589/1-1040 GRLALWGLGM CCYVFSAQQL QAAQVSPDDI SLGFLVRAKG VVPGSTAPLE ENSTTRP00000012696/1-1038 GRLALWGLGT CCYVFSPRQL QAAHVDSEEV SLGFLVRAKT VVPGSTAPLE ENSBTAP00000027887/1-1013 GRLALWGLGT CCYVFSAKQL QAAHVDSEDL SLGFLVLAKR VVPGSTAPLE bmy_04249T0/1-943 GRLALWGLGT CCYVFSTKQL QAAHXXSEDV SLGFLVRAKR VVPGSTAPLE 601 650 ENSP00000300589/1-1040 FLHITFQCFF AAFYLALSAD VPPALLRHLF NCGRPGNSPM ARLLPTMCIQ ENSTTRP00000012696/1-1038 FLHITFQCFF AAFYLALSAD TPPSSLRHLF NCHGPGCSPL AGVLSKLRMR ENSBTAP00000027887/1-1013 FLHITFQCFF AAFYLALSAD TPPSSLRHLF QDHRPESSPL ARVLPKLFLR bmy_04249T0/1-943 FLHITFQCFF AAFYLALSAD TPPSSLRHLF NGHGPGCSPL ASVLPKLRVR 651 700 ENSP00000300589/1-1040 ASEGKDSSVA ALLQKAEPHN LQITAAFLAG LLSREHWGLL AECQTSEKAL ENSTTRP00000012696/1-1038 DSGCKEGSVA ALLQGAEPHN LQITAAFLAG LLSQEHRGLL AECQVFEKAL ENSBTAP00000027887/1-1013 GSRCREGSVA ALLQGAEPHN LQITGAFLAG LLSQEHRSLL AECQASETAL bmy_04249T0/1-943 GSGCKEGSVA ALLQGAEPHN LQITAAFLAG LLSQEHRGLL AECQVSEKAL 701 750 ENSP00000300589/1-1040 LRRQACARWC LARSLRKHFH SIPPAAPGEA KSVHAMPGFI WLIRSLYEMQ ENSTTRP00000012696/1-1038 LWRQACTRRC LARSLRKHFR SIPPAVPGEA KSVHAMPSFI WLIRSLYEMQ ENSBTAP00000027887/1-1013 LRRWDCVRRC LTRSLREHFR SIPPALPGEA KSMHALPGFL WLIRSLYEMQ bmy_04249T0/1-943 LCRQACTRRC LARSLREHFR SIPPAVPGEA KSVHAMPSFI WLVRSLYEMQ 751 800 ENSP00000300589/1-1040 EERLARKAAR GLNVGHLKLT FCSVGPTECA ALAFVLQHLR RPVALQLDYN ENSTTRP00000012696/1-1038 EERLAREAVR RLDVGHLKLT FCSVGPAECA ALAFVLRHLR QPVALQLDHN ENSBTAP00000027887/1-1013 EERLAREAVC RLNVGHLKLT FCGVGPAECA ALAFVLRHLR RPVALQLDHN bmy_04249T0/1-943 EERLAREAVR RLDVGHLKLT FCSVGPAECA ALAFVLRHLR QPVALQLDHN 801 850 ENSP00000300589/1-1040 SVGDIGVEQL LPCLGVCKAL YLRDNNISDR GICKLIECAL HCEQLQKLAL ENSTTRP00000012696/1-1038 SVGDMGVEQL LPCLGVCKAL YLRDNNVSDR GICKLTEHAV RCEQLQKLAL ENSBTAP00000027887/1-1013 SVGDIGVEQL LPCLGVCKAL YLRDNNISDR GICKLVEHAL RCEQLQKLAL bmy_04249T0/1-943 SVGDIGVEQL LPCLGICKAL YLRDNNVSDR GICKLIEHAL RCDQLQKLAL 851 900 ENSP00000300589/1-1040 FNNKLTDGCA HSMAKLLACR QNFLALRLGN NYITAAGAQV LAEGLRGNTS ENSTTRP00000012696/1-1038 FNNKLTDGCA HSMAKLLACK QNFLALXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000027887/1-1013 FNNKLTDGCA HSMARLLACK QNFLALRLGN NHITAAGAEV LAQGLRTNNS bmy_04249T0/1-943 FNNKLTDGCA HSMAKLLACK QNFLALRLGN NHITAAGAEV LAQGLRANTS 901 950 ENSP00000300589/1-1040 LQFLGFWGNR VGDEGAQALA EALGDHQSLR WLSLVGNNIG SVGAQALALM ENSTTRP00000012696/1-1038 XXXXXLWGNK VGDRGAQALA EALGDHRSLR WLSLVGNDIG SVGAQALALM ENSBTAP00000027887/1-1013 LQFLGFWGNQ VGDEGAQALA AALGDHQSLR WLSLVGNNIG SVGAQALALM bmy_04249T0/1-943 LQFLGFWGNK VGDRGAQALA EALGDHQSLR WLSLVGNNIG SVGAQALALM 951 1000 ENSP00000300589/1-1040 LAKNVMLEEL CLEENHLQDE GVCSLAEGLK KNSSLKILKL SNNCITYLGA ENSTTRP00000012696/1-1038 LEKNMALEEL CLEENHVQDE GVCCLAKGLE KNSSLKVLKL SNNGITSLGA ENSBTAP00000027887/1-1013 LEKNMALEEL CLEENHVQDE GVCFLAKGLA RNSSLKVLKL SNNHISSLGA bmy_04249T0/1-943 LEKNVALEEL ---------- ---------- ---------- ---------- 1001 1050 ENSP00000300589/1-1040 EALLQALERN DTILEVWLRG NTFSLEEVDK LGCRDTRLLL ENSTTRP00000012696/1-1038 EALLQALEKN DTILEVWLRG NTFSPEETEK LSHRDTRLLL ENSBTAP00000027887/1-1013 EALLRALEKN DTILEVWLRG NTFSPEEIEK LSHQDTRLLL bmy_04249T0/1-943 ---------- ------WLRR NTFSPEEIEK LSHRDTRLLL