KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:10 2014 Check: 00 .. Name: ENSBTAP00000027888/1-371 Len: 375 Check: 8792 Weight: 1.00 Name: ENSP00000216294/1-368 Len: 375 Check: 2313 Weight: 1.00 Name: ENSTTRP00000011921/1-369 Len: 375 Check: 5540 Weight: 1.00 Name: bmy_17197T0/1-375 Len: 375 Check: 1563 Weight: 1.00 Name: BACU015402/1-340 Len: 375 Check: 7408 Weight: 1.00 // 1 50 ENSBTAP00000027888/1-371 MGTPSGLKDD CEALLSRFQE MDSVRFEDFA ELWRSMKFGT IFCGRMRNLE ENSP00000216294/1-368 MGTPPGLQTD CEALLSRFQE TDSVRFEDFT ELWRNMKFGT IFCGRMRNLE ENSTTRP00000011921/1-369 MGATAGLKAD CEALLSRFQE MDSVRFEDFT DLWRSMKFGT IFCGRMRNLE bmy_17197T0/1-375 MGAPAGLQAD YETLLSRFQE MDSVRFEDFT DLWRSMKFGT IFCGRMRNLE BACU015402/1-340 MGAPAGLQAD CEALLSRFQE MDSVRFEDFT DLWRSMKFGT IFCGRMRNLE 51 100 ENSBTAP00000027888/1-371 KNTFTKEALT LAWRYFLPPY TFQIRVGALY LLYGLYNMQL CQPKQKIRVA ENSP00000216294/1-368 KNMFTKEALA LAWRYFLPPY TFQIRVGALY LLYGLYNTQL CQPKQKIRVA ENSTTRP00000011921/1-369 KNAFTKEALA LAWRYFLPPY TFQIRVCALY LLYGLYNTQL CQPKQKIRVA bmy_17197T0/1-375 KNTFTKEALA LAWRYFLPPY TFQIRVCALY LLYGLYNTQL CQPKQKIRVA BACU015402/1-340 KNTFTKEALA LAWRYFLPPY TFQIRVCALY LLYGLYNTQL CQPKQKIRVA 101 150 ENSBTAP00000027888/1-371 LKDWDEILKF QQDLINAQHF DAAYIFRKLR LDRAFHFTAM PKLLSYRMKK ENSP00000216294/1-368 LKDWDEVLKF QQDLVNAQHF DAAYIFRKLR LDRAFHFTAM PKLLSYRMKK ENSTTRP00000011921/1-369 VKDWDEILKF QQDLINAQHF DAAYIFRKLR LDRAFHFTAM PTLLSYRMKK bmy_17197T0/1-375 VKDWDEILKF QQDLIKAQHF DAAYIFRKLR LDRAFHFTAM PTLLSYRMKK BACU015402/1-340 VKDWDEILKF QQDLINAQHF DAAYIFRKLR LDRAFHFTAM PTL------- 151 200 ENSBTAP00000027888/1-371 KMQRAEITEE FKDPNDRVLK LITSDVLEEM MNVHDHYQRM KHVISADKSN ENSP00000216294/1-368 KIHRAEVTEE FKDPSDRVMK LITSDVLEEM LNVHDHYQNM KHVISVDKSK ENSTTRP00000011921/1-369 KIQRPEVTED FKDPSDHVMK LITSDVLEEM LNVHDHYQRM KHIISADRSN bmy_17197T0/1-375 KIQRAEVTED FKDPNDHVMK LITSDVLEEM LNVHDHYQRM KHIISADRSN BACU015402/1-340 ---------- ---------- --------EM LNVHDHYQRM KHIISADRSN 201 250 ENSBTAP00000027888/1-371 PEKSLDLIKD DFFDNIKNIV LEHQQWHKDR KKPPLKLKVK GGEEKSERNS ENSP00000216294/1-368 PDKALSLIKD DFFDNIKNIV LEHQQWHKDR KNPSLKSKTN DGEEKMEGNS ENSTTRP00000011921/1-369 PDKALSLIKD DFFDNIKNIV LEHQQWHKDR KNLSSKLKAK DGEEKSEGNS bmy_17197T0/1-375 PDKALSLIKD DFFDNIKNIV LEHQQWHKDR KNLSLKSKAK DGEEKSEGNS BACU015402/1-340 PDKALSLIKD DFFDNIKNIV LEHQQWHKDR KNLSLKSTAK DGEEKSEGNS 251 300 ENSBTAP00000027888/1-371 QQSERCERAE SLAKIKSKAF SVVAQASKSR RHRQVKVDVS DSE--SGQVQ ENSP00000216294/1-368 QETERCERAE SLAKIKSKAF SVVIQASKSR RHRQVKLDSS DSDSASGQGQ ENSTTRP00000011921/1-369 QQSERSERAE SLAKIKSRAF SVFVEASKSR RHRQVKLDSS DSDSASSQGQ bmy_17197T0/1-375 QQSERSERAE SLAKIKSKAF SVFVQASKSR RHRQVKLDSS DSDSASSQGQ BACU015402/1-340 QQSERSERAE SLAKIKSKAF SVFVQASKSR RHRQIKLDSS DSDSASSQGQ 301 350 ENSBTAP00000027888/1-371 TKTTRKRKNK ETLKPAGKKV SSRDRDDMQN IHMEDKSLNL SMPVVTEEDE ENSP00000216294/1-368 VKATRKKEKK ERLKPAGRKM SLRNKGNVQN IHKEDKPLSL SMPVITEE-E ENSTTRP00000011921/1-369 TKATRKRINK ETLKPAGGKM SSRNRXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17197T0/1-375 TKATRKRRNK ETLKPVGRKM SSRNRGDMQK VQREDKSLSL SMPVITEEEE BACU015402/1-340 TKATRKRRNK ETLKPAGRKM SSRNRGDMQN VHKEDKSLSL SMPVITEEEE 351 400 ENSBTAP00000027888/1-371 ENESFSETEF TAPKRRRKQR TKS-- ENSP00000216294/1-368 ENESLSGTEF TASKKRRKH- ----- ENSTTRP00000011921/1-369 XXXXXXXX-F TAPKRRRKHR ----- bmy_17197T0/1-375 ENESFSETEF TAPKRRRKHR TKSLV BACU015402/1-340 ENESFSETEF TAPKRRRKHR TKSLV