KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:34:11 2014 Check: 00 .. Name: ENSBTAP00000027893/1-505 Len: 641 Check: 2254 Weight: 1.00 Name: ENSP00000398610/1-505 Len: 641 Check: 3989 Weight: 1.00 Name: bmy_07039T0/1-570 Len: 641 Check: 2571 Weight: 1.00 Name: BACU010680/1-510 Len: 641 Check: 6739 Weight: 1.00 // 1 50 ENSBTAP00000027893/1-505 ---------- ---------- ---------- ---------- ---------- ENSP00000398610/1-505 ---------- ---------- ---------- ---------- ---------- bmy_07039T0/1-570 GAQHIQGELG CPPR--VRPD AAPPARASLR LTLFSGETGE SPRQSLNTLS BACU010680/1-510 ---------M CTERGFVRTD IPPSP----- ---------- ---------- 51 100 ENSBTAP00000027893/1-505 -------MSY PGYPPPAGGY PPGAPGVPEL ESHAGGPQGL FAAMDRAVSD ENSP00000398610/1-505 -------MSY PGYPPPPGGY PPAAPG---- ----GGPWG- -GAAYPPPPS bmy_07039T0/1-570 FFLSDLTMSY PGYPPPAGGY PPAAPG---- ----GGAWG- -GAGYPP-PN BACU010680/1-510 ---TDLTMSY PGYPPPAGGY PPAAPG---- ----GGAWG- -GAGYPP-PN 101 150 ENSBTAP00000027893/1-505 GPAMMLAAVL ---------L VRATAANMSG TFGGANVPNL YPGAPGGGYP ENSP00000398610/1-505 MPPIGLDNVA TYAGQFNQDY LSGMAANMSG TFGGANMPNL YPGAPGAGYP bmy_07039T0/1-570 MPPIGLDNVA SYAGQFNQDY LSGMAANMSG TFGGANVPNL YPGAPGGGYP BACU010680/1-510 MPPIGLDNVA SYAGQFNQDY LSGMAANMSG TFGGANVPNL YPGAPGGGYP 151 200 ENSBTAP00000027893/1-505 PVPPGGFGQP PPAQQPVPSY GMYPPPGGNP PSGMPSYPPY PGAPVPGQPM ENSP00000398610/1-505 PVPPGGFGQP PSAQQPVPPY GMYPPPGGNP PSRMPSYPPY PGAPVPGQPM bmy_07039T0/1-570 PVPPGGFGHS PSAQQPVPPY GMYPPPGGNP PSGMPSYPPY PGAPVSGQPM BACU010680/1-510 PVPPGGFGHS PSAQQPVPPY GMYPPPGGNP PSGMPSYPPY PGAPVSGQPM 201 250 ENSBTAP00000027893/1-505 LPPGQQPPGV YPGQPPMTYP GQSPVPPPG- QQPVPSYPGY SGSGTVTPAV ENSP00000398610/1-505 PPPGQQPPGA YPGQPPVTYP GQPPVPLPGQ QQPVPSYPGY PGSGTVTPAV bmy_07039T0/1-570 PPPGQQPPGA YPGQPPMTYP GQSPMPPPG- QQPVPSYPGY SGSGTVTPAV BACU010680/1-510 PPPGQQPPGS YPGQPPMTYP GQSPMPPPG- QQPVPSYPGY SGSGTVTPAV 251 300 ENSBTAP00000027893/1-505 SPAQFGNRGT ITDASGFDPL RDAEVLRKAM KGFGTDEQAI IDCLGSRSNK ENSP00000398610/1-505 PPTQFGSRGT ITDAPGFDPL RDAEVLRKAM KGFGTDEQAI IDCLGSRSNK bmy_07039T0/1-570 PPAQFGNRGT ITDAPGFDPL RDAEVLRKAM KGFGTDEQAI TDCLGSRSNK BACU010680/1-510 PPAQFGNRGT ITDAPGFDPL RDAEVLRKAM KGFGTDEQAI TDCLGSRSNK 301 350 ENSBTAP00000027893/1-505 QRQQILLSFK TAYGKDLIKD LKSELSGNFE KTILALMKTP VLFDAYEIKE ENSP00000398610/1-505 QRQQILLSFK TAYGKDLIKD LKSELSGNFE KTILALMKTP VLFDIYEIKE bmy_07039T0/1-570 QRQQILLSFK TAYGKDLIKD LKSELSGNFE KTILALMKTP VLFDAYEIKE BACU010680/1-510 QRQQILLSFK TAYG------ ---------- ---------- ---------- 351 400 ENSBTAP00000027893/1-505 AIKGAGTDEA CLIEILASRS NEHIRELNRV YKTEFKKTLE EAIRSDTSGH ENSP00000398610/1-505 AIKGVGTDEA CLIEILASRS NEHIRELNRA YKAEFKKTLE EAIRSDTSGH bmy_07039T0/1-570 AIKGAGTDEA CLIEILASRS NEHIRELNRV YKTEFKKTLE EAIRNDTSGH BACU010680/1-510 --KGAGTDEA CLIEILASRS NEHIRELNRV YKTEFKKTLE EAIRNDTSGH 401 450 ENSBTAP00000027893/1-505 FQRLLISLS- ---------- ---------- ---------- ---------- ENSP00000398610/1-505 FQRLLISLS- ---------- ---------- ---------- ---------- bmy_07039T0/1-570 FQRLLISLSQ VLFPGQRSGP QQGEVDLWAM GRRNREGGVR LQGVTLTSQP BACU010680/1-510 FQRLLVSLS- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000027893/1-505 ---QGNRDES TNVDMTPVLA SVQELYAAGE NRLGTDESKF NAILCSRSRA ENSP00000398610/1-505 ---QGNRDES TNVDMSLAQR DAQELYAAGE NRLGTDESKF NAVLCSRSRA bmy_07039T0/1-570 ASFQGNRDES TNVDMTLVQR DVQELYAAGE NRLGTDESKF NAVLCSRSRA BACU010680/1-510 ---QGNRDES TNVDMTLVQR DVQELYAAGE NRLGTDESKF NAVLCSRSRA 501 550 ENSBTAP00000027893/1-505 HLVA------ ---------- ---------V FNEYQRMTGR DIEKSICREM ENSP00000398610/1-505 HLVA------ ---------- ---------V FNEYQRMTGR DIEKSICREM bmy_07039T0/1-570 HLVA------ ---------- ---------- ---------- ---------- BACU010680/1-510 HLVAGDLEGA PKERGILETS SVSGEYERAV FNEYQRMTGR DIEKSICREM 551 600 ENSBTAP00000027893/1-505 SGDLEQGMLA VVKCLKNTPA FFAERLNKAM RGAGTKDRTL IRIMVSRSEI ENSP00000398610/1-505 SGDLEEGMLA VVKCLKNTPA FFAERLNKAM RGAGTKDRTL IRIMVSRSET bmy_07039T0/1-570 ---------- -VKCLKNTPA FFAERLNKAM RGAGTKDRTL IRIMVSRSEI BACU010680/1-510 SGDLEQGMLA VVKCLKNTPA FFAERLNKAM RGAGTKDRTL IRIMVSRSEI 601 650 ENSBTAP00000027893/1-505 DLLDIRAEYK RLYGKSLYHD ITGDTSGDYR KILLKICGGN D ENSP00000398610/1-505 DLLDIRSEYK RMYGKSLYHD ISGDTSGDYR KILLKICGGN D bmy_07039T0/1-570 DLLDIRAEYK RLYGKSLYHD ITGDTSGDYR KILLKICGGN D BACU010680/1-510 DLLDIRAEYK RLYGKSLYHD ITGDTSGDYR KILLKICGGN D