KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:21 2014 Check: 00 .. Name: ENSP00000373570/1-537 Len: 538 Check: 509 Weight: 1.00 Name: bmy_05509T0/1-442 Len: 538 Check: 7163 Weight: 1.00 Name: ENSBTAP00000027945/1-537 Len: 538 Check: 9666 Weight: 1.00 Name: BACU006580/1-432 Len: 538 Check: 4952 Weight: 1.00 Name: ENSTTRP00000002762/1-538 Len: 538 Check: 3436 Weight: 1.00 // 1 50 ENSP00000373570/1-537 MSAPKLLSLG CIFFPLLLFQ QARAQFPRQC ATVEALRSGM CCPDLSPVSG bmy_05509T0/1-442 MKAPKLLSLG YTFLALLFFQ QAWAQFPRQC VTIEALRNGV CCPDLFPLSG ENSBTAP00000027945/1-537 MKSPTLLSLG YMFLVLLFFQ QAWAQFPREC ATIEALRNGV CCPDLSPLSG BACU006580/1-432 MKAPKLLSLG YTFVALLFFQ QAWAQFPRQC VTIEALRNGM CCPDLFPLSG ENSTTRP00000002762/1-538 MKAPKLLSLG YTFLALLFFQ QAWAQFPRQC VTIEALRNGV CCPDLFPLSG 51 100 ENSP00000373570/1-537 PGTDRCGSSS GRGRCEAVTA DSRPHSPQYP HDGRDDREVW PLRFFNRTCH bmy_05509T0/1-442 PGTDRCGSSS GRGRCEVVTA DSRPHGPQYP HDGRDDREGW PTRFFNRTCH ENSBTAP00000027945/1-537 PGSDRCGLSS GRGRCEVVIA DSRPHSHHYP HDGRDDREGW PTRFFNRTCH BACU006580/1-432 PGTDRCGSSS GRGRCEVVTA DSRPHGPQYP HDGRDDREGW PTRFFNRTCH ENSTTRP00000002762/1-538 PGTDRCGSSS GRGRCEVVTA DSRPHGPQYP HDGRDDREGW PTRFFNRTCH 101 150 ENSP00000373570/1-537 CNGNFSGHNC GTCRPGWRGA ACDQRVLIVR RNLLDLSKEE KNHFVRALDM bmy_05509T0/1-442 CIGNFSGYNC GTCRPGWRGA ACDQRVLIVR RNLLDLSTEE KKRFVRALDM ENSBTAP00000027945/1-537 CNGNFSGHNC GTCRPGWGGA ACDQRVLTVR RNLLDLSTEE KNRFVRALDM BACU006580/1-432 CIGNFSGYNC GTCRPGWRGA ACDQRVLIVR RNLLDLSTEE KKRFVRALDM ENSTTRP00000002762/1-538 CIGNFSGYNC GTCRPGWRGA ACDQRVLIVR RNLLDLSTEE KNRFVRALDM 151 200 ENSP00000373570/1-537 AKRTTHPLFV IATRRSEEIL GPDGNTPQFE NISIYNYFVW THYYSVKKTF bmy_05509T0/1-442 AKRTIHPQFV IATRRSEEIL GPDGNTPQFE NISIYNYFVW THYYSVKKTF ENSBTAP00000027945/1-537 AKRTTHPQFV IATRRSEEIL GPDGNTPQFE NISIYNYFVW THYYSVKKTF BACU006580/1-432 AKHTIHPQFV IATRRSEEIL GPDGNTPQFE NISIYNYFVW THYYSVKKTF ENSTTRP00000002762/1-538 AKRTIHPQFV IATRRSEEIL GPDGNTPQFE NISIYNYFVW THYYSVKKTF 201 250 ENSP00000373570/1-537 LGVGQESFGE VDFSHEGPAF LTWHRYHLLR LEKDMQEMLQ EPSFSLPYWN bmy_05509T0/1-442 LGAGQESFGE VDFSHEGPAF LTWHRYHLLQ LERDMQVXMR HGHVHMLY-- ENSBTAP00000027945/1-537 LGAGQESFGE VDFSHEGPAF LTWHRYHLLQ LERDMQEMLQ DPSFSLPYWN BACU006580/1-432 LGAGQESFGE VDFSHEGPAF LTWHRYHLLQ LERDMQEMLQ DPSFSLPYWN ENSTTRP00000002762/1-538 LGAGQESFGE VDFSHEGPAF LTWHRYHLLQ LERDMQEMLQ DTSFSLPYWN 251 300 ENSP00000373570/1-537 FATGKNVCDI CTDDLMGSRS NFDSTLISPN SVFSQWRVVC DSLEDYDTLG bmy_05509T0/1-442 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027945/1-537 FATGKNTCDI CTDDLMGSRS NFDSTLISPN SVFSQWRVVC ESLEDYDTLG BACU006580/1-432 FATGKNTCDI CTDDLMGSRS NFDSNLISPN SIFSQWRVVC ESLEDYDTLG ENSTTRP00000002762/1-538 FATGKNTCDI CTDDLMGSRS NFDSTLISPN SVFSQWRVVC ESLEDYDTLG 301 350 ENSP00000373570/1-537 TLCNSTEDGP IRRNPAGNVA RPMVQRLPEP QDVAQCLEVG LFDTPPFYSN bmy_05509T0/1-442 --RGGTEGRP IRRNPAGNVA RPMVQRLPEP QDVTQCLEVG LFDTPPFYST ENSBTAP00000027945/1-537 TLCNSTEGGP IKRNPAGNVA RPMVQRLPKP QDVAQCLEVG SFDTPPFYSN BACU006580/1-432 TLCNS----- ---------- ---------- ---------- ---------- ENSTTRP00000002762/1-538 TLCNSTEGRP IRRNPAGNVA RPMVQRLPEP QDVTQCLEVG LFDTPPFYST 351 400 ENSP00000373570/1-537 STNSFRNTVE GYSDPTGKYD PAVRSLHNLA HLFLNGTGGQ THLSPNDPIF bmy_05509T0/1-442 STNSFRNTVE ------GKVD AKILSCASQD H--------- ---------- ENSBTAP00000027945/1-537 STNSFRNTVE GYSHPTGRYD PAVRSLHNLA HLFLNGTGGQ THLSPNDPIF BACU006580/1-432 ---------- -YSDPTGRYD PTVRSLHNLA HLFLNGTGGQ THLSPNDPIF ENSTTRP00000002762/1-538 STNSFRNTVE GYSDPTGRYD PTVRSLHNLA HLFLNGTGGQ THLSPNDPIF 401 450 ENSP00000373570/1-537 VLLHTFTDAV FDEWLRRYNA DISTFPLENA PIGHNRQYNM VPFWPPVTNT bmy_05509T0/1-442 ------SDC- ---------P DISTFPLENA PIGHNRQYNM VPFWPPITNI ENSBTAP00000027945/1-537 VLLHTFTDAV FDEWLRRYNA DISTYPLENA PIGHNRQYNM VPFWPPVTNI BACU006580/1-432 VLLHTFTDAV FDEWLRRYNA ---------- ---------- ---------- ENSTTRP00000002762/1-538 VLLHTFTDAV FDEWLRRYTA DISTYPLENA PIGHNRQYNM VPFWPPITNI 451 500 ENSP00000373570/1-537 EMFVTAPDNL GYTYEIQWPS REFSVPEIIA IAVVGALLLV ALIFGTASYL bmy_05509T0/1-442 EMFVTAPDNL GYTYEVQWSS RNFSISEIVT IAVVAALLLV AVIFVGASCL ENSBTAP00000027945/1-537 EMFVTAPDNL GYTYEVQWPS RSFSISEIVT IAVVAALSLV AVIFAGASCL BACU006580/1-432 ---------- ---------G QNFSISEIVT IAVVAALLLV AVIFVGASCL ENSTTRP00000002762/1-538 EMFVTAPDNL GYTYEVQWSS RNFSISEIVT IAVIAALLLV AVIFVGASCL 501 550 ENSP00000373570/1-537 IRARRSMDEA NQPLLTDQYQ CYAEEYEKLQ NPNQSVV- bmy_05509T0/1-442 IRARRNMDEA NQPLLTDQYQ QYVEEYEKIQ NPNQSVV- ENSBTAP00000027945/1-537 IRARSNMDEA NQPLLTDQYQ HYIEEYEKIH NPNQSVV- BACU006580/1-432 IRARRNMDEA NQPLLTDQYQ QYVEEYEKIQ NPNQSVV- ENSTTRP00000002762/1-538 IRARRNMDEA NQSLLTDQYQ HYVEEYEKIQ NPNQSVVL