KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:22 2014 Check: 00 .. Name: ENSTTRP00000010051/1-888 Len: 888 Check: 4884 Weight: 1.00 Name: bmy_15351T0/1-596 Len: 888 Check: 1786 Weight: 1.00 Name: ENSP00000368666/1-888 Len: 888 Check: 4418 Weight: 1.00 Name: ENSBTAP00000027948/1-888 Len: 888 Check: 5378 Weight: 1.00 Name: BACU011387/1-609 Len: 888 Check: 9833 Weight: 1.00 // 1 50 ENSTTRP00000010051/1-888 MLRQVLHRGL RTCFSRLGHF IASHPVFFAS APVLISILLG ASFSRYQVEE bmy_15351T0/1-596 ---------- ---------- ---------- ---------- ---------- ENSP00000368666/1-888 MLRQVLHRGL RTCFSRLGHF IASHPVFFAS APVLISILLG ASFSRYQVEE ENSBTAP00000027948/1-888 MLRQVLHRGL RTCFSRLGHF IASHPVFFAS APVLISILLG ASFSRYQVEE BACU011387/1-609 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010051/1-888 SVEHLLAPQH SLAKIERNLV NSLFPVNRSK HRLYSDLQTP GRYGRVIVTS bmy_15351T0/1-596 ---------- ---------- ---------- ---------- ---------- ENSP00000368666/1-888 SVEHLLAPQH SLAKIERNLV NSLFPVNRSK HRLYSDLQTP GRYGRVIVTS ENSBTAP00000027948/1-888 SVEHLLAPQH SLAKIERNLV NSLFPVNRSK HRLYSDLQTP GRYGRVIVTS BACU011387/1-609 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010051/1-888 FQKANMLDQH HTDLILKLHA AVTRIQVPRP GFNYTFAHIC ILNNDKTCIV bmy_15351T0/1-596 ---------- -------MRG ASKGISVR-- ------AVVC VL-------- ENSP00000368666/1-888 FQKANMLDQH HTDLILKLHA AVTKIQVPRP GFNYTFAHIC ILNNDKTCIV ENSBTAP00000027948/1-888 FQKANMLDQH HTDLILKLHA AVTRIQVPRP GFNYTFAHIC ILNNDKTCIV BACU011387/1-609 ---------- -------LHA AVTRIQVPRP GFNYTFAHIC ILNNDKTCIV 151 200 ENSTTRP00000010051/1-888 DDIVHVLEEL KNARATNRTN FAITYPITHL KDGRAVYNGH QLGGVTVHSK bmy_15351T0/1-596 ---------- ---------- ---------- --GKAGGSG- ---------- ENSP00000368666/1-888 DDIVHVLEEL KNARATNRTN FAITYPITHL KDGRAVYNGH QLGGVTVHSK ENSBTAP00000027948/1-888 DDIVHVLEEL KNARATNRTN FAITYPITHL KDGRAVYNGH QLGGVTVHSK BACU011387/1-609 DDIVHVLEEL KNARATNRTN FAITYPITHL KDGRAVYNGH QLGGVTVHSK 201 250 ENSTTRP00000010051/1-888 DRVKSAEAVQ LTYYLQSINS LNDMVAERWE SSFCDTVRLF QKSNGKVKMY bmy_15351T0/1-596 ---------- ---------- ---------- ---------- ---------- ENSP00000368666/1-888 DRVKSAEAIQ LTYYLQSINS LNDMVAERWE SSFCDTVRLF QKSNSKVKMY ENSBTAP00000027948/1-888 DRVKSAEAVQ LTYYLQSINS LNDMVAERWE SSFCDTVRLF QKSNSKVKMY BACU011387/1-609 DRVKSAEAVQ LTYYLQSINS LNDMVAERWE SSFCDTVRLF QKSNSKVKMY 251 300 ENSTTRP00000010051/1-888 PYTSSSLRED FQKTSRVSER YLVTSLILVA TMAILCCSMQ DCVRSKPWLG bmy_15351T0/1-596 PEEKSALQSP NGQTSKIIQQ ---------- ---------- ---------- ENSP00000368666/1-888 PYTSSSLRED FQKTSRVSER YLVTSLILVV TMAILCCSMQ DCVRSKPWLG ENSBTAP00000027948/1-888 PYTSSSLRED FQKTSRVSER YLVTSLILVV TMAILCCSMQ DCVRSKPWLG BACU011387/1-609 PYTSSSLRED FQKTSRVSER YLVTSLILVV TMAILCCSMQ DCVRSKPWLG 301 350 ENSTTRP00000010051/1-888 LLGLVTISLA TLTAAGIINL TGGKYNSTFL GVPFVMLXXX XXXXXXXXXX bmy_15351T0/1-596 ---------- ---------- ---------- ------QGHG LYGTFEMLSS ENSP00000368666/1-888 LLGLVTISLA TLTAAGIINL TGGKYNSTFL GVPFVMLGHG LYGTFEMLSS ENSBTAP00000027948/1-888 LLGLVTISLA TLTAAGIINL TGGKYNSTFL GVPFVMLGHG LYGTFEMLSS BACU011387/1-609 LLGLVTISLA TLTAAGIINL TGGKYNSTFL GVPFIILGHG LYGTFEMLSS 351 400 ENSTTRP00000010051/1-888 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15351T0/1-596 WRKTREDQHV KERTAAVYAD SMLSFSLTTA MYLVTFGIGA SPFTNIEAAR ENSP00000368666/1-888 WRKTREDQHV KERTAAVYAD SMLSFSLTTA MYLVTFGIGA SPFTNIEAAR ENSBTAP00000027948/1-888 WRKTREDQHV KERTAAVYAD SMLSFSLTTA MYLVTFGIGA SPFTNIEAAR BACU011387/1-609 WRKTREDQHV KERTAAVYAD SMLSFSLTTA MYLVTFGIGA SPFTNIEAAR 401 450 ENSTTRP00000010051/1-888 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSIF CRKVPKPEAL bmy_15351T0/1-596 IFCCNSCIAI FFNYLYVLSF YGSSLVFTGY IENNYQHSIF CRKVPKPEAL ENSP00000368666/1-888 IFCCNSCIAI FFNYLYVLSF YGSSLVFTGY IENNYQHSIF CRKVPKPEAL ENSBTAP00000027948/1-888 IFCCNSCIAI FFNYLYVLSF YGSSLVFTGY IENNYQHSIF CRKVPKPEAL BACU011387/1-609 IFCCNSCIAI FFNYLYVLSF YGSSLVFTGY IENNYQHSIF CRKVPKPEAL 451 500 ENSTTRP00000010051/1-888 QEKPAWYRFL LTARFSEDTT DGEEANTYES HLLVCFLKRY YCDWITNTYV bmy_15351T0/1-596 QEKPAWYRFL LTARFSEDTT DGEEANTYES HLLVCFLKRY YCDWITNTYV ENSP00000368666/1-888 QEKPAWYRFL LTARFSEDTA EGEEANTYES HLLVCFLKRY YCDWITNTYV ENSBTAP00000027948/1-888 QEKPAWYRFL LTARFSEDTA DGEEANTYES HLLVCFLKRY YCDWITNTYV BACU011387/1-609 QEKPAWYRFL LTARFSEDTT DGEEANTYES HLLVCFLKRY YCDWITNTYV 501 550 ENSTTRP00000010051/1-888 KPFVVLFYLI YISFALMGYL QVSEGSDLSN IVATATQTIE YTTAQQKYFS bmy_15351T0/1-596 KPFVVLFYLI YISFALMGYL QVSEGSDLSN IVATATQTIE YTTAQQKYFS ENSP00000368666/1-888 KPFVVLFYLI YISFALMGYL QVSEGSDLSN IVATATQTIE YTTAQQKYFS ENSBTAP00000027948/1-888 KPFVVLFYLI YISFALMGYL QVSEGSDLSN IVATATQTIE YTTAQQKYFS BACU011387/1-609 KPFVVLFYLI YISFALMGYL QVSEGSDLSN IVATATQTIE YTTAQQKYFS 551 600 ENSTTRP00000010051/1-888 NYSPVIGFYI YESIEYWNTS VQEDVLEYTK GFVRISWFES YLNYLRKLNV bmy_15351T0/1-596 NYSPVIGFYI YESIEYWNTS VQEDVLEYTK GFVRISWFES YLNYLRKLNV ENSP00000368666/1-888 NYSPVIGFYI YESIEYWNTS VQEDVLEYTK GFVRISWFES YLNYLRKLNV ENSBTAP00000027948/1-888 NYSPVIGFYI YESIEYWNTS VQEDVLEYTK GFVRISWFES YLNYLRKLNV BACU011387/1-609 NYSPVIGFYI YESIEYWNTS VQEDVLEYTK GFVRISWFES YLNYLRKLNV 601 650 ENSTTRP00000010051/1-888 TTGLPKKNFT DMLRNSFLKA PQFSHFQEDI IFSKKYNDEV DVVASRMFLV bmy_15351T0/1-596 TTGLPKKNFT DMLRNSFLKA PQFSHFQEDI IFSKKYNDEV DVVASRMFLV ENSP00000368666/1-888 STGLPKKNFT DMLRNSFLKA PQFSHFQEDI IFSKKYNDEV DVVASRMFLV ENSBTAP00000027948/1-888 STGLPKKNFT DMLRNSFLKA PQFSHFQEDI IFSKKYNDEV DVVASRMFLV BACU011387/1-609 TTGLPKKNFT DMLRNSFLKA PQFSHFQEDI IFSKKYNDEV DVVASRMFLV 651 700 ENSTTRP00000010051/1-888 AKTMETNREE LYDLLETLRR LSVTSKVKFI VFNPSFVYMD RYASSLGAPL bmy_15351T0/1-596 AKTMETNREE LYDLLETLRR LSVTSKVKFI VFNPSFVYMD RYASSLGAPL ENSP00000368666/1-888 AKTMETNREE LYDLLETLRR LSVTSKVKFI VFNPSFVYMD RYASSLGAPL ENSBTAP00000027948/1-888 AKTMETNREE LYDLLETLRR LSVTSKVKFI VFNPSFVYMD RYASSLGAPL BACU011387/1-609 AKTMETNREE LYDLLETLRR LSVTSKVKFI VFNPSFVYMD RYASSLGAPL 701 750 ENSTTRP00000010051/1-888 HNSCISALFL LFFSAFLVAD SLINVWLTLT VVSVEFGVIG FMTLWKVELD bmy_15351T0/1-596 HNSCISALFL LFFSAFLVAD SLINVWLTLT VVSVEFGVIG FMTLWKVELD ENSP00000368666/1-888 HNSCISALFL LFFSAFLVAD SLINVWITLT VVSVEFGVIG FMTLWKVELD ENSBTAP00000027948/1-888 HNSCISALFL LFFSAFLVAD SLINVWLTLT VVSVEFGVIG FMTLWKVQLD BACU011387/1-609 HNSCISALFL LFFSXXX--- ---------- ---------- ---------- 751 800 ENSTTRP00000010051/1-888 CISVLCLIYG INYTIDNCAP LLSTFVLGKD FTRTKWVKNA LEVHGVAILQ bmy_15351T0/1-596 CISVLCLIYG INYTIDNCAP LLSTFVLGKD FTRTKWVKNA LEVHGVAILQ ENSP00000368666/1-888 CISVLCLIYG INYTIDNCAP MLSTFVLGKD FTRTKWVKNA LEVHGVAILQ ENSBTAP00000027948/1-888 CISVLCLIYG INYTIDNCAP LLSTFVLGKD FTRTKWVKNA LEVHGVAILQ BACU011387/1-609 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000010051/1-888 SYLCYLVGLI PLAAVPSNLT CTLFRCLFLI AFVTFFHCFA ILPVILTFLP bmy_15351T0/1-596 SYLCYLVGLI PLAAVPSNLT CTLFRCLFLI AFVTFFHCFA ILPVILTFLP ENSP00000368666/1-888 SYLCYIVGLI PLAAVPSNLT CTLFRCLFLI AFVTFFHCFA ILPVILTFLP ENSBTAP00000027948/1-888 SYLCYLVGLI PLAAVPSNLT CTLFRCLFLI ALVTFFHCFA ILPVILTFLP BACU011387/1-609 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000010051/1-888 PSKKKRKEKK NPENREEIEC VEMVDIDSTR VVDQITTV bmy_15351T0/1-596 PSKKKRKEKK NPENREEIEC VEMVDIDSTR VVDQITTV ENSP00000368666/1-888 PSKKKRKEKK NPENREEIEC VEMVDIDSTR VVDQITTV ENSBTAP00000027948/1-888 PSKKKRKEKK NPENREEIEC VEMVDIDSTR VVDQITTV BACU011387/1-609 ---------- ---------- ----XIPGGR LSD-----