KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:23 2014 Check: 00 .. Name: BACU001783/1-580 Len: 591 Check: 2599 Weight: 1.00 Name: ENSTTRP00000013414/1-426 Len: 591 Check: 3473 Weight: 1.00 Name: ENSP00000256996/1-427 Len: 591 Check: 7091 Weight: 1.00 Name: bmy_04124T0/1-233 Len: 591 Check: 1709 Weight: 1.00 Name: ENSBTAP00000027965/1-426 Len: 591 Check: 5781 Weight: 1.00 // 1 50 BACU001783/1-580 MDPKCQCLEL HDGHFVPVLG FGTYAPEEVP KSEALEVTKF AIDVGFRHID ENSTTRP00000013414/1-426 MGPRKRPETQ KTPEVV---- ---VRPKSKR NRSPWELEPE AKKLCLKGPG ENSP00000256996/1-427 MAPKKRPETQ KTSEIV---- ---LRPRNKR SRSPLELEPE AKKLCAKGSG bmy_04124T0/1-233 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027965/1-426 MAPRKRPENQ KTPEVV---- ---VRPKSKR NRSPRELEPE AKKLCVKGPG 51 100 BACU001783/1-580 CAHLYQNEEQ VGQAIRSKIA DGTVKREDIF YTSKPGEELF PKDENG--KM ENSTTRP00000013414/1-426 PSRRFDSGCL WAGLASLRVP PPC-SIVRAL HQHKLGTAAW PSLQQGLQQS ENSP00000256996/1-427 PSRRCDSDCL WVGLAGPQIL PPCRSIVRTL HQHKLGRASW PSVQQGLQQS bmy_04124T0/1-233 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027965/1-426 SSRRFDSG-L WAGLASLRVP PLCSSIVRAL HQHKLGTAAW PSLQQGLQQS 101 150 BACU001783/1-580 IFDTVDLCRT WEALEKCKDA GLAKSIGVSN FNRKQLEKIL NKPGLKYKPV ENSTTRP00000013414/1-426 FLNSLASYRI FQK------- -------AAP FDRRA----- --TSLAWHPT ENSP00000256996/1-427 FLHTLDSYRI LQK------- -------AAP FDRRA----- --TSLAWHPT bmy_04124T0/1-233 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027965/1-426 FLNSLASYRI FQK------- -------AAP FDRRA----- --TSLAWHPT 151 200 BACU001783/1-580 CNQVECHPYL NQSKLLDFCK SNDIVLVAYG ALGSQRLKDW VNPSYPVLLE ENSTTRP00000013414/1-426 ---------- HPSTLAVGSK GGDILLWNFG ---------- -------IKD ENSP00000256996/1-427 ---------- HPSTVAVGSK GGDIMLWNFG ---------- -------IKD bmy_04124T0/1-233 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027965/1-426 ---------- HPSTLAVGSK GGDILLWNFG ---------- -------IKD 201 250 BACU001783/1-580 DPVLCAIAKK HKQTAALIAL RYQMQRGVVV LAKSYNKKRI KENMQVLNFE ENSTTRP00000013414/1-426 KPTFI---KG IGAGGSITGL KFN-----PL NTNQFFTSSM EGTTRLQDFK ENSP00000256996/1-427 KPTFI---KG IGAGGSITGL KFN-----PL NTNQFYASSM EGTTRLQDFK bmy_04124T0/1-233 ---------- ---------- ---------- ---------M EGTTRLQDFK ENSBTAP00000027965/1-426 KPTFI---KG IGAGGSITGM KFN-----PL NTNQFFTSSM EGTTRLQDFK 251 300 BACU001783/1-580 LTPEDMKAID GLNSNVRYYD LLLREVQKQC GANQHLCVAK SEVEKAIKRA ENSTTRP00000013414/1-426 ---------- ---------G NTLRVFASSG TCNFWFCSLD VSV------- ENSP00000256996/1-427 ---------- ---------G NILRVFASSD TINIWFCSLD VSA------- bmy_04124T0/1-233 ---------- ---------G NTLRVFASSG TCNLGSAPPP PEP------- ENSBTAP00000027965/1-426 ---------- ---------G NTLRVFASSD TCNVWFCSLD VSV------- 301 350 BACU001783/1-580 IDVGYRHIDS AYMYQNEEEI GRAIQMKIAD GTVKRGDLFY TTKLWSTFFR ENSTTRP00000013414/1-426 ---------R SRVVVTGDNV GNVILLNMDG ---------- -RELWNL--- ENSP00000256996/1-427 ---------S SRMVVTGDNV GNVILLNMDG ---------- -KELWNL--- bmy_04124T0/1-233 ---------S SSL------- ---------- ---------- --QLWNL--- ENSBTAP00000027965/1-426 ---------K SRVVVTGDNV GHVILLNMDG ---------- -RELWNL--- 351 400 BACU001783/1-580 PELVQTCLES SLRKLQLSYV DLYLTHFPIA MKPGEDFFPK DTYGNIIFDT ENSTTRP00000013414/1-426 ---------- RMHKKKVTHV ---------A LNPCCDWFLA TASVDQTVKI ENSP00000256996/1-427 ---------- RMHKKKVTHV ---------A LNPCCDWFLA TASVDQTVKI bmy_04124T0/1-233 ---------- RMHKKKVTHV ---------A LNPCCDWFLA TASVDQTVKI ENSBTAP00000027965/1-426 ---------- RMHKKKVTHV ---------A LNPCCDWLLA TASVDQTVKI 401 450 BACU001783/1-580 VDLCTTWEAL EKCKDAGLAK SIGVSNFNRK QLEMILNEPG LKYKP-VCNQ ENSTTRP00000013414/1-426 WDLRQVRGKS SFLYSLLHRH PVNAXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000256996/1-427 WDLRQVRGKA SFLYSLPHRH PVNAACFSPD GARLLTTDQK SEIRVYSASQ bmy_04124T0/1-233 WDLRQVRGKS SFLYSLLHRH PVNAAHFSPD GAQLLTTDQK SEIRVYSASQ ENSBTAP00000027965/1-426 WDLRQVRGKS SFLHSLPHRH PVNAAHFSPD GAQLLTTDQK SEIRVYSACQ 451 500 BACU001783/1-580 VECHPYLNQS KLLEFCKSKD ILLVAYATLG SDLRKKWVKK DNPVLL---Q ENSTTRP00000013414/1-426 XXXXXXXXXX XXXXXXXXXX X--------- ---XATWHPR YNLIVVGRYP ENSP00000256996/1-427 WDCPLGLIPH PHRHFQHLTP I--------- ---KAAWHPR YNLIVVGRYP bmy_04124T0/1-233 WDCPPSLIPH PHRHFQHLTP I--------- ---KATWHPR YNLIVVGRYP ENSBTAP00000027965/1-426 WDCPPSLIPH PHRHFQHLTP I--------- ---KASWHPR YNLIVVGRYP 501 550 BACU001783/1-580 DPVLNTIAEK HRRT-----P AQVTLRYQLQ REVAALAKSF NEKRLKENFQ ENSTTRP00000013414/1-426 DPNFKSCTSH ELRTIDVFDG SSGKMMYQLY DPESSGIMSL N--------- ENSP00000256996/1-427 DPNFKSCTPY ELRTIDVFDG NSGKMMCQLY DPESSGISSL N--------- bmy_04124T0/1-233 DPNFKSCTSH ELRTIDVFDG SSGKMMYQLY DPESSGIMSL N--------- ENSBTAP00000027965/1-426 DPNFKSCSPH ELRTIDVFDG SSGKIMYQLY DPESSGIMSL N--------- 551 600 BACU001783/1-580 VFEFQLTPED MQSLDGLNRN MRYFEEDSLS HHPNYPFHDE Y ENSTTRP00000013414/1-426 --EFNPMGDT LASVMGYHI- LIWSQEEAGK RK-------- - ENSP00000256996/1-427 --EFNPMGDT LASAMGYHI- LIWSQEEART RK-------- - bmy_04124T0/1-233 --EFNPMGDT LASVMGYHI- LIWSQEEAGK RK-------- - ENSBTAP00000027965/1-426 --EFNPMGDT LASVMGYHI- LVWSPEDAGT QK-------- -