KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:30 2014 Check: 00 .. Name: ENSTTRP00000009850/1-696 Len: 797 Check: 447 Weight: 1.00 Name: ENSP00000381216/1-711 Len: 797 Check: 213 Weight: 1.00 Name: BACU002570/1-703 Len: 797 Check: 4064 Weight: 1.00 Name: bmy_06917T0/1-688 Len: 797 Check: 9782 Weight: 1.00 Name: ENSBTAP00000027991/1-708 Len: 797 Check: 515 Weight: 1.00 // 1 50 ENSTTRP00000009850/1-696 ------GSLP PLPPASGGGG SGGSGGAGGD PPPGPPGAGD RGGGGPGGGG ENSP00000381216/1-711 MSDYSTGGPP PGPPPPAGGG -GGAGGAGGG PPPGPPGAGD RGGGGPGGGG BACU002570/1-703 -MQLRFHWLP PKRSTFISFI ---------- ---------- ---------A bmy_06917T0/1-688 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027991/1-708 ---------- ---------- ---------- ---------- -GGGGRGAGG 51 100 ENSTTRP00000009850/1-696 -PGGGSAGGP SQPPGGGGPG IRKDAFADAV QRARQIAAKI GGDAATTVNN ENSP00000381216/1-711 -PGGGSAGGP SQPPGGGGPG IRKDAFADAV QRARQIAAKI GGDAATTVNN BACU002570/1-703 -ICPERCQSP YTRPRHSTIG LEDRTRKGFW LRPK-IAAKI GGDAATTVNN bmy_06917T0/1-688 ---------- ---------- ---------- -----IAAKI GGDAATTVNN ENSBTAP00000027991/1-708 RAGGXSAGGP SQPPGGGGPG IRKDAFADAV QRARQIAAKI GGDAATTVNN 101 150 ENSTTRP00000009850/1-696 STPDFGFGGQ KRQLEDG--- -------QEG SISCQVGPIH PPPRTSMTEE ENSP00000381216/1-711 STPDFGFGGQ KRQLEDGDQP ESKKLASQGD SISSQLGPIH PPPRTSMTEE BACU002570/1-703 STPDFGFGGQ KRQLEDGDQP ESKKLASQGD SISSQLGPIH PPPRTSMTEE bmy_06917T0/1-688 STPDFGFGGQ KRQLEDGDQP ESKKLASQGD SISSQLGPIH PPPRTSMTEE ENSBTAP00000027991/1-708 STPDFGFGGQ KRQLEDGDQP ESKKLASQGD SMSSQLGPIH PPPRTSMTEE 151 200 ENSTTRP00000009850/1-696 YRVPDGMVGL IIGRGGEQIN KIQQDSGCKV QISPDSGGLP ERSVSLTGAP ENSP00000381216/1-711 YRVPDGMVGL IIGRGGEQIN KIQQDSGCKV QISPDSGGLP ERSVSLTGAP BACU002570/1-703 YRVPDGMVGL IIGRGGEQIN KIQQDSGCKV QISPDSGGLP ERSVSLTGAP bmy_06917T0/1-688 YRVPDGMVGL ---------- ---------- ----NSGGLP ERSVSLTGAP ENSBTAP00000027991/1-708 YRVPDGMVGL IIGRGGEQIN KIQQDSGCKV QISPDSGGLP ERSVSLTGAP 201 250 ENSTTRP00000009850/1-696 ESVQKAKMML DDIVSRGRGG PPGQFHDNAN GGQNGTVQEI MIPAGKAGLV ENSP00000381216/1-711 ESVQKAKMML DDIVSRGRGG PPGQFHDNAN GGQNGTVQEI MIPAGKAGLV BACU002570/1-703 ESVQKAKMML DDIVSRGRGG PPGQFHDNAN GGQNGTVQEI MIPAGKAGLV bmy_06917T0/1-688 ESVQKAKMML DDIVSRGRGG PPGQFHDNAN GGQNGTVQEI MIPAGKAGLV ENSBTAP00000027991/1-708 ESVQKAKMML DDIVSRGRGG PPGQFHDNAN GGQNGTVQEI MIPAGKAGLV 251 300 ENSTTRP00000009850/1-696 IGKGGETIKQ LQERAGVKMI LIQDGSQNTN VDKPLRIIGD PYKVQQACEM ENSP00000381216/1-711 IGKGGETIKQ LQERAGVKMI LIQDGSQNTN VDKPLRIIGD PYKVQQACEM BACU002570/1-703 IGKGGETIKQ LQERAGVKMI LIQDGSQNTN VDKPLRIIGD PYKVQQACEM bmy_06917T0/1-688 IGKGGETIKQ LQERAGVKMI LIQDGSQNTN VDKPLRIIGD PYKVQQACEM ENSBTAP00000027991/1-708 IGKGGETIKQ LQERAGVKMI LIQDGSQNTN VDKPLRIIGD PYKVQQACEM 301 350 ENSTTRP00000009850/1-696 VMDILRERDQ GGFGDRNEYG SRIGGGID-- ---------- ---------- ENSP00000381216/1-711 VMDILRERDQ GGFGDRNEYG SRIGGGID-- ---------- ---------- BACU002570/1-703 VMDILRERDQ GGFGDRNEYG SRIGGGID-- ---------- ---------- bmy_06917T0/1-688 VMDILRERDQ GGFGDRNEYG SRIGGGIDVS AGFPRWMECQ DRRGGGGGRG ENSBTAP00000027991/1-708 VMDILRERDQ GGFGDRNEYG SRIGGGID-- ---------- ---------- 351 400 ENSTTRP00000009850/1-696 ---------- ---------- ------VPVP RHSVGVVIGR SGEMIKKIQN ENSP00000381216/1-711 ---------- ---------- ------VPVP RHSVGVVIGR SGEMIKKIQN BACU002570/1-703 ---------- ---------- ------VPVP RHSVGVVIGR SGEMIKKIQN bmy_06917T0/1-688 GWPAGSRGPQ AGDRAQLTLL RPARPQVPVP RHSVGVVIGR SGEMIKKIQN ENSBTAP00000027991/1-708 ---------- ---------- ------VPVP RHSVGVVIGR SGEMIKKIQN 401 450 ENSTTRP00000009850/1-696 DAGVRIQFKQ DDGTGPEKIA HIMGPPDRCE HAARIINDLL QSLRSGPPGP ENSP00000381216/1-711 DAGVRIQFKQ DDGTGPEKIA HIMGPPDRCE HAARIINDLL QSLRSGPPGP BACU002570/1-703 DAGVRIQFKQ DDGTGPEKIA HIMGPPDRCE HAARIINDLL QSLRSGPPGP bmy_06917T0/1-688 DAGVRIQFKQ DDGTGPEKIA HIMGPPDRCE HAARIINDLL QSLRSGPPGP ENSBTAP00000027991/1-708 DAGVRIQFKQ DDGTGPEKIA HIMGPPDRCE HAARIINDLL QSLRSGPPGP 451 500 ENSTTRP00000009850/1-696 PGGPGMPPGG RGRGRGQGNW GPPGGEMTFS IPTHKCGLVI GRGGENVKAI ENSP00000381216/1-711 PGGPGMPPGG RGRGRGQGNW GPPGGEMTFS IPTHKCGLVI GRGGENVKAI BACU002570/1-703 PGGPGMPPGG RGRGRGQGNW GPPGGEMTFS IPTHKCGLVI GRGGENVKAI bmy_06917T0/1-688 PGGPGMPPGG RGRGRGQGNW GPPGGEMTFS IPTHKCGLVI GRGGENVKAI ENSBTAP00000027991/1-708 PGGPGMPPGG RGRGRGQGNW GPPGGEMTFS IPTHKCGLVI GRGGENVKAI 501 550 ENSTTRP00000009850/1-696 NQQTGAFVEI SRQLPPNGDP NFKLFIIRGS PQQIDHAKQL IEEKIEGPLC ENSP00000381216/1-711 NQQTGAFVEI SRQLPPNGDP NFKLFIIRGS PQQIDHAKQL IEEKIEGPLC BACU002570/1-703 NQQTGAFVEI SRQLPPNGDP NFKLFIIRGS PQQIDHAKQL IEEKIEGPLC bmy_06917T0/1-688 NQQTGAFVEI SRQLPPNGDP NFKLFIIRGS PQQIDHAKQL IEEKIEGPLC ENSBTAP00000027991/1-708 NQQTGAFVEI SRQLPPNGDP NFKLFIIRGS PQQIDHAKQL IEEKIEGPLC 551 600 ENSTTRP00000009850/1-696 PVGPGPGGPG PAGPMGPFNP GPFNQGPPGA PPHAGGPPPH QYPPQGWGNT ENSP00000381216/1-711 PVGPGPGGPG PAGPMGPFNP GPFNQGPPGA PPHAGGPPPH QYPPQGWGNT BACU002570/1-703 PVGPGPGGPG PAGPMGPFNP GPFNQGPPGA PPHAGGPPPH QYPPQGWGNT bmy_06917T0/1-688 PVGPGPGGPG PAGPMGPFNP GPFNQGPPGA PPHAGGPPPH QYPPQGWGNT ENSBTAP00000027991/1-708 PVGPGPGGPG PAGPMGPFNP GPFNQGPPGA PPHAGGPPPH QYPPQGWGNT 601 650 ENSTTRP00000009850/1-696 YPQWQPPAPH DPNKAAAAAA DPNAAWAAYY SHYYQQPPGP VPGPAPAPAA ENSP00000381216/1-711 YPQWQPPAPH DPSKAAAAAA DPNAAWAAYY SHYYQQPPGP VPGPAPAPAA BACU002570/1-703 YPQWQPPAPH DPNKAAAAAA APNAAWAAYY SHYYQQPPGP ---------- bmy_06917T0/1-688 YPQWQPPAPH DPNKAAAAAA DPNAAWAAYY SHYYQQPPGP VPGPAPAPAA ENSBTAP00000027991/1-708 YPQWQPPAPH DPNKAAAAAA DPNAAWAAYY SHYYQQPPGP VPGPAPAPAA 651 700 ENSTTRP00000009850/1-696 PPTQGEPPQP PPAGQSDYTK AWEEYYKKIG QQPQQPGAPP QQDYTKAWEE ENSP00000381216/1-711 PPAQGEPPQP PPTGQSDYTK AWEEYYKKIG QQPQQPGAPP QQDYTKAWEE BACU002570/1-703 ----GEPPQP PPAGQSDYTK AWEEYYKKIG QQPQQPGAPP QQDYTKAWEE bmy_06917T0/1-688 PPTQGEPPQP PPAGQSDYTK AWEEYYKKIG QQPQQPGAPP QQDYTKAWEE ENSBTAP00000027991/1-708 PPTQGEPPQP PPAGQSDYTK AWEEYYKKIG QQPQQPGAPP QQDYTKAWEE 701 750 ENSTTRP00000009850/1-696 YYKKQAQVAT GGGPGAPPGS QPDYSAAWAE XXXXXXXXXX XXXXXXXXXX ENSP00000381216/1-711 YYKKQAQVAT GGGPGAPPGS QPDYSAAWAE YYRQQAAYYG QTPGPGGPQP BACU002570/1-703 YYKKQAQVAT GGGPGAPPGS QPDYSAAWAE YYRQQAAYYG QTPGPGGPQP bmy_06917T0/1-688 YYKKQAQVAT GGGPGAPPGS QPDYSAAWAE YYRQQAAYYG QTPGPGGPQP ENSBTAP00000027991/1-708 YYKKQAQVAT GGGPGAPPGS QPDYSAAWAE YYRQQAAYYG QTPGPGGPQP 751 800 ENSTTRP00000009850/1-696 XXXXXXXXXA Q--------- ---------- ---------- ------- ENSP00000381216/1-711 PPTQQGQQQA Q--------- ---------- ---------- ------- BACU002570/1-703 PPTQQGQQQA SGNCHPPPPP FSFQPPATVH PALVGSAGNP FPCGVCP bmy_06917T0/1-688 PPTQQGQQQA SGNCHPPPPP FSFQPPATVH PALVGSAGNP FPCGVCP ENSBTAP00000027991/1-708 PPTQQGQQQA SGNCHPPPPP FSFQPPATVH PALVGSAGNP FPCGVCP