KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:36 2014 Check: 00 .. Name: bmy_08893T0/1-1204 Len: 1562 Check: 6746 Weight: 1.00 Name: ENSTTRP00000006857/1-1549 Len: 1562 Check: 9411 Weight: 1.00 Name: BACU009659/1-1420 Len: 1562 Check: 3257 Weight: 1.00 Name: ENSP00000322915/1-1548 Len: 1562 Check: 2782 Weight: 1.00 Name: ENSBTAP00000027998/1-1521 Len: 1562 Check: 1761 Weight: 1.00 // 1 50 bmy_08893T0/1-1204 ---------- ---------- ---------- --MDTEMSED IDHNLTPTLD ENSTTRP00000006857/1-1549 MAEREVESSP RKRFEQKTGA VFDEIVENCG GIMDTEMSED IDHNLTPTLD BACU009659/1-1420 ---------- ---------- ---------- --MDTEMSED IDHNLTPTLD ENSP00000322915/1-1548 MAEREVESGP RKRFEQKSGA VFDEIVENCG GIMDTEMSED IDHNLTPTLD ENSBTAP00000027998/1-1521 ---------- ---------- ---------G GIMDTEMSED IDHNLTPTLD 51 100 bmy_08893T0/1-1204 SMS------- -----YGMPN QTGSENSLLD EDDYFLNSGD LAGIPVVGSD ENSTTRP00000006857/1-1549 SMS------- -----YGMPN QTGSENSLLD EDDYFLNSGD LAGIPVVGSD BACU009659/1-1420 SMSYGMPXXX XXXMFYGMPN QTGSENSLLD EDDYFLNSGD LAGIPVVGSD ENSP00000322915/1-1548 SMS------- -----YGMPN QTGSENSLLD EDDYFLNSGD LAGIPVVGSD ENSBTAP00000027998/1-1521 SMS------- -----YGMPN QTGSENSLLD EDDYFLNSGD LAGIPVVGSD 101 150 bmy_08893T0/1-1204 NEDEQDFSSK DNLVSSIHTD DSLEVERRVT QHESDNENEI QIQNKLKKDF ENSTTRP00000006857/1-1549 NEDEQDFSSK DNLVSSIHTD DSLEVERRVT QHESDNENEI QIQNKLKKDF BACU009659/1-1420 NEDEQDFSSK DNLVSSIHTD DSLEVERRVT QHESDNENEI QIQNKLKKDF ENSP00000322915/1-1548 NEDEQDFSSK DNLVSSIHTD DSLEVERRVT QHESDNENEI QIQNKLKKDF ENSBTAP00000027998/1-1521 NEDEQDFSSK DNLVSSIHTD DSLEVERRVT QHESDNENEI QIQNKLKKDF 151 200 bmy_08893T0/1-1204 PKQFDQVSVF KSIRKDFSLV RENSKETFSG KEKNRDLTYL EREKRLDKPH ENSTTRP00000006857/1-1549 PKQFDQVSVF KSIRKDFSLV RENSKETFSG KEKNRDLTYL EREKRLDKPH BACU009659/1-1420 PKQFDQVSVF KSIRKDFSLV RENSKETFSG KEKNRDLTYL EREKRLDKPH ENSP00000322915/1-1548 PKQFDQVSVF KSIRKDFSLV RENSKETFSG KEKNRDLTY- EREKRLDKPH ENSBTAP00000027998/1-1521 PKQFDQVSVF KSIRKDFSLV RENSKETFSG KEKNRDLTYH EREKRLDKPH 201 250 bmy_08893T0/1-1204 KELDSRLKSS FFDKAANQVE ETLHTHLPQT PETNFRDSSY PFANKESIGS ENSTTRP00000006857/1-1549 KELDSRLKSS FFDKAANQVE ETLHTHLPQT PETNFRDSSY PFANKESIGS BACU009659/1-1420 KELDSRLKSS FFDKAANQVE ETLHTHLPQT PETNFRDSSY PFANKESIGS ENSP00000322915/1-1548 KDLDSRLKSS FFDKAANQVE ETLHTHLPQT PETNFRDSSY PFANKESIGS ENSBTAP00000027998/1-1521 KELDSRLKSS FFDKAANQVE ETLHTHLPQT PETNFRDSSY PFANKESIGS 251 300 bmy_08893T0/1-1204 ELGNSFASNI RIKEEPLDDE YDKAMAPQQG LLDKIKDEPD NAQEYSHGQQ ENSTTRP00000006857/1-1549 ELGNSFASNV RIKEEPLDDE YDKAMAPQQG LLDKIKDEPD NAQEYSHGQQ BACU009659/1-1420 ELGNSFASNI RIKEEPLDDE YDKAMAPQQG LLDKIKDEPD NAQEYSHGQQ ENSP00000322915/1-1548 ELGNSFASNI RIKEEPLDDE YDKAMAPQQG LLDKIKDEPD NAQEYSHGQQ ENSBTAP00000027998/1-1521 ELGNSFASNI RIKEEPLDDE YDKAMAPQQG LLDRIKDEPD NAQEYSHGQQ 301 350 bmy_08893T0/1-1204 QKTQEGELKI SAVFSVSGSP LAPQLTTGFQ PSLASSGMNK MLPSVPATAV ENSTTRP00000006857/1-1549 QKTQEGELKI SAVFSVSGSP LAPQLTTGFQ PSLASSGMNK MLPSVPATAV BACU009659/1-1420 QKTQEGELKI SAVFSVSGSP LAPQLTTGFQ PSLASSGMNK MLPSVPATAV ENSP00000322915/1-1548 QKTQEGELKI SAVFSVSGSP LAPQLTTGFQ PSLASSGMNK MLPSVPATAV ENSBTAP00000027998/1-1521 QKTQEGELKI SAVFSVSGSP LAPQLTTGFQ PSLASSGMNK MLPSVPATAV 351 400 bmy_08893T0/1-1204 RVSCSGCKKI LQKGQTAYQR KGSTQLFCST LCLTGYTVPP ARPPPPPTKK ENSTTRP00000006857/1-1549 RVSCSGCKKI LQKGQTAYQR KGSTQLFCST LCLTGYTVPP ARPPPPPTKK BACU009659/1-1420 RVSCSGCKKI LQKGQTAYQR KGSTQLFCST LCLTGYTVPP ARPPPPPTKK ENSP00000322915/1-1548 RVSCSGCKKI LQKGQTAYQR KGSTQLFCST LCLTGYTVPP ARPPPPLTKK ENSBTAP00000027998/1-1521 RVSCSGCKKI LQKGQTAYQR KGSTQLFCST LCLTGYTVPP ARPPPPPTKK 401 450 bmy_08893T0/1-1204 TCSSCSKDIL NPKDVISAQF ENTTTSKDFC SQSCLSTYEL KRKPVVTINT ENSTTRP00000006857/1-1549 TCSSCSKDIL NPKDVISAQF ENTTTSKDFC SQSCLSTYEL KRKPVVTINT BACU009659/1-1420 TCSSCSKDIL NPKDVISAQF ENTTTSKDFC SQSCLSTYEL KRKPVVTINT ENSP00000322915/1-1548 TCSSCSKDIL NPKDVISAQF ENTTTSKDFC SQSCLSTYEL KKKPIVTINT ENSBTAP00000027998/1-1521 TCSSCSKDIL NPKDVISAQF ENTTTSKDFC SQSCLSTYEL KRKPVVTINT 451 500 bmy_08893T0/1-1204 NSISTKCSMC QKNAVIRHEV NYQNVVHKLC SDACFSKFRS ANNLTMNCCE ENSTTRP00000006857/1-1549 NSISTKCSMC QKNAVIRHEV NYQNVVHKLC SDACFSKFRS ANNLTMNCCE BACU009659/1-1420 NSISTKCSMC QKNAVIRHEV NYQNVVHKLC SDACFSKFRS ANNLTMNCCE ENSP00000322915/1-1548 NSISTKCSMC QKNAVIRHEV NYQNVVHKLC SDACFSKFRS ANNLTMNCCE ENSBTAP00000027998/1-1521 NSISTKCSMC QKNAVIRHEV NYQNVVHKLC SDACFSKFRS ANNLTMNCCE 501 550 bmy_08893T0/1-1204 NCGGYCYSGS GQCHMLQIEG QAKKFCSSTC VTAYKQKSAK ITPCALCKSL ENSTTRP00000006857/1-1549 NCGGYCYSGS GQCHMLQIEG QAKKFCSSTC VTAYKQKSAK ITPCALCKSL BACU009659/1-1420 NCGGYCYSGS GQCHMLQIEG QAKKFCSSTC VTAYKQKSAK ITPCALCKSL ENSP00000322915/1-1548 NCGGYCYSGS GQCHMLQIEG QSKKFCSSSC ITAYKQKSAK ITPCALCKSL ENSBTAP00000027998/1-1521 NCGGYCYSGS GQCHMLQIEG QSKKFCSSTC VTAYKQKSAK ITPCALCKSL 551 600 bmy_08893T0/1-1204 RSSAEMIENT NSLGKTELFC SVNCLSAYRV KMVTSAGVQV QCNSCKTSAI ENSTTRP00000006857/1-1549 RSSAEMIENT NSLGKTELFC SVNCLSAYRV KMVTSAGVQV QCNSCKTSAI BACU009659/1-1420 RSSAEMIENT NSLGKTELFC SVNCLSAYRV KMVTSAGVQV QCNSCKTSAI ENSP00000322915/1-1548 RSSAEMIENT NSLGKTELFC SVNCLSAYRV KMVTSAGVQV QCNSCKTSAI ENSBTAP00000027998/1-1521 RSSAEMIENT NSLGKTELFC SVNCLSAYRV KMVTSAGVQV QCNSCKTSAI 601 650 bmy_08893T0/1-1204 PQYHLAMSDG SIRNFCSYSC VVAFQ----- ---------- ---GQVIVSI ENSTTRP00000006857/1-1549 PQYHLAMSDG SIRNFCSYSC VVAFQNLFNK PAGMNSSVVP LSQGQVIVSI BACU009659/1-1420 PQYHLAMSDG SIRNFCSYSC VVAFQNLFNK PA-------- ---------- ENSP00000322915/1-1548 PQYHLAMSDG SIRNFCSYSC VVAFQNLFNK PTGMNSSVVP LSQGQVIVSI ENSBTAP00000027998/1-1521 PQYHLAMSDG SIRNFCSYSC VVAFQNLFNK PAGMNSSVVP LSQGQVIVSI 651 700 bmy_08893T0/1-1204 PTGSTVSAGG SNTSAVSPTS ISSSAAAGLQ RLAAQSQHVG FARSVVKLKC ENSTTRP00000006857/1-1549 PTGSTVSAGG GNTSAVSPTS ISSSAAAGLQ RLAAQSQHVG FARSVVKLKC BACU009659/1-1420 ---------- ---------- ---------- ---------- ---------- ENSP00000322915/1-1548 PTGSTVSAGG GSTSAVSPTS ISSSAAAGLQ RLAAQSQHVG FARSVVKLKC ENSBTAP00000027998/1-1521 PTGSTVSAGG GNTSAVSPTS ISSSAAAGLQ RLAAQSQHVG FARSVVKLKC 701 750 bmy_08893T0/1-1204 QHCNRLFATK PELLDYKGKM FQFCGKNCSD EYKKINNVMA MCEYCKIEKI ENSTTRP00000006857/1-1549 QHCNRLFATK PELLDYKGKM FQFCGKNCSD EYKKINNLMA MCEYCKIEKI BACU009659/1-1420 ---------- -------GXX XXXXXXXXXN EF-------- ---------- ENSP00000322915/1-1548 QHCNRLFATK PELLDYKGKM FQFCGKNCSD EYKKINNVMA MCEYCKIEKI ENSBTAP00000027998/1-1521 QHCNRLFATK PELLDYKGKM FQFCGKNCSD EYKKINNVMA MCEYCKIEKI 751 800 bmy_08893T0/1-1204 VKETVRFSGA DKSFCSEGCK LLYKHDLAKR WGNHCKMCSY CLQTSPKLVQ ENSTTRP00000006857/1-1549 VKETVRFSGA DKSFCSEGCK LLYKHDLAKR WGNHCKMCSY CLQTSPKLVQ BACU009659/1-1420 ------FSGA LVSGPSNCCK LLYKHDLAKR WGNHCKMCSY CLQTSPKLVQ ENSP00000322915/1-1548 VKETVRFSGA DKSFCSEGCK LLYKHDLAKR WGNHCKMCSY CLQTSPKLVQ ENSBTAP00000027998/1-1521 IKETVRFSGA DKSFCSEGCK LLYKHDLAKR WGNHCKMCSY CLQTSPKLVQ 801 850 bmy_08893T0/1-1204 NNLGGKVEEF CCEECMSKYT VLFYQMAKCD GCKRQGKLSE SLKWRGEMKH ENSTTRP00000006857/1-1549 NNLGGKVEEF CCEEXXXXXX XXXXXMAKCD GCKRQGKLSE SLKWRGEMKH BACU009659/1-1420 NNLGGKVEEF CCEECMSKYT VLFYQMAKCD GCKRQGKLSE SLKWRGEMKH ENSP00000322915/1-1548 NNLGGKVEEF CCEECMSKYT VLFYQMAKCD ACKRQGKLSE SLKWRGEMKH ENSBTAP00000027998/1-1521 NNLGGKVEEF CCEECMSKYT VLLCQMAKCD GCKRQGKLSE SLKWRGEMKH 851 900 bmy_08893T0/1-1204 FCNLLCILMF CNQQSMCDPP SQNNAASISM VPAASAGPPS QRKDSTPVIA ENSTTRP00000006857/1-1549 FCNLLCILMF CNQQSMCDPP SQNNAGSVSM VPAASSGPPS HRKDSTPVIA BACU009659/1-1420 FCNLLCILMF CNQQSMCDPP SQNNAASISM VPAASAGPPS QRKDSTPVIA ENSP00000322915/1-1548 FCNLLCILMF CNQQSVCDPP SQNNAANISM VQAASAGPPS LRKDSTPVIA ENSBTAP00000027998/1-1521 FCNLLCILMF CNQQSMCDPP SQNNAASISM VPAASAGPPS LRKDSTPVIA 901 950 bmy_08893T0/1-1204 NVVSLASAPA AQPTVNSNSV LQGAVPTVTA KIIGDASTQT DALKLPPSQP ENSTTRP00000006857/1-1549 NVVSLASAPA AQPTVNSNSV LQGAVPTVTA KIIGDASTQT DALKLPPSQP BACU009659/1-1420 NVVSLASAPA AQPTVNSNSV LQGAVPTVTA KIIGDASTQT DALKLPPSQP ENSP00000322915/1-1548 NVVSLASAPA AQPTVNSNSV LQGAVPTVTA KIIGDASTQT DALKLPPSQP ENSBTAP00000027998/1-1521 NVVSLASAPA AQPTVNSNSV LQGAVPTVTA KIIGDASTQT DVLKLPPSQP 951 1000 bmy_08893T0/1-1204 PRLLKNKALL CKPITQTKAT SCKPHTQNKE CQTEDTPTQP QVIVVPVPVP ENSTTRP00000006857/1-1549 PRLLKNKALL CKPITQTKAT SCKPHTQNKE CQTEDTPTQP QVIVVPVPVP BACU009659/1-1420 PRLLKNKALL CKPITQTKAT SCKPHTQNKE CQTEDTPTQP QVIVVPVPVP ENSP00000322915/1-1548 PRLLKNKALL CKPITQTKAT SCKPHTQNKE CQTEDTPSQP QIIVVPVPVP ENSBTAP00000027998/1-1521 PRLLKNKALL CKPITQTKAT SCKPHTQNKE CQTEDTPAQP QIIAVPVPVP 1001 1050 bmy_08893T0/1-1204 VFVPIPLHLY TQYAPVPFGI PVPMPVPMLI PSSMDNEDKV TESIEDIKEK ENSTTRP00000006857/1-1549 VFVPIPLHLY TQYAPVPFGI PVPMPVPMLI PSSMDNEDKV TESIEDIKEK BACU009659/1-1420 VFVPIPLHLY TQYAPVPFGI PVPMPVPMLI PSSMDNEDKV TESIEDIKEK ENSP00000322915/1-1548 VFVPIPLHLY TQYAPVPFGI PVPMPVPMLI PSSMDSEDKV TESIEDIKEK ENSBTAP00000027998/1-1521 VFVPVPLHLY TQYAPVPFGI PVPMPVPMLI PSSMGNEDKV TESIEDIKEK 1051 1100 bmy_08893T0/1-1204 LPSHPFEADL LEMAEMIAED EEKEKTLSQG GSQTSEQELF LDTKIFEKDQ ENSTTRP00000006857/1-1549 LPSHPFEADL LEMAEMIAED EEKEKTLSQG GSQTSEQELF LDTKIFEKDQ BACU009659/1-1420 LPSHPFEADL LEMAEMIAED EEKEKTLSQG GSQTSEQELF LDTKIFEKDQ ENSP00000322915/1-1548 LPTHPFEADL LEMAEMIAED EEK-KTLSQG ESQTSEHELF LDTKIFEKDQ ENSBTAP00000027998/1-1521 LPSHPFEADL LEMAEMIAED EEKEKTLSQG ESQTSEQELF LDTKIFEKDQ 1101 1150 bmy_08893T0/1-1204 GSTYSGDLES EAVSTPHSWE EELNHYALKS NTVQEADLEV KQFSKGETEQ ENSTTRP00000006857/1-1549 GSTYSGDLES EAVSTPHSWE EELNHYALKS NTVQEADLEV KQFSKGETEQ BACU009659/1-1420 GSTYSGDLES EAVSTPHSWE EELNHYALKS NTVQEADLEV KQFSKGETEQ ENSP00000322915/1-1548 GSTYSGDLES EAVSTPHSWE EELNHYALKS NAVQEADSEL KQFSKGETEQ ENSBTAP00000027998/1-1521 GSTYSGDLES EAVSTPHSWE EELNHYALKS NTVQEADLEV KQFSKGETEQ 1151 1200 bmy_08893T0/1-1204 DLEADFPSES FDPLNKGQGI QARSRTRRRH RDGFPQPRRR ---------- ENSTTRP00000006857/1-1549 DLEADFPSES FDPLNKGQGI QARSRTRRRH RDGFPQPRRR GRKKSVVSVE BACU009659/1-1420 DLEADFPSES FDPLNKGQGI QARSRTRRRH RDGFPQPRRR GRKKSVVSVE ENSP00000322915/1-1548 DLEADFPSDS FDPLNKGQGI QARSRTRRRH RDGFPQPRRR GRKKSIVAVE ENSBTAP00000027998/1-1521 DLEADFPSES FDPLNKGQGI QVRSRTRRRH RDGFPQPRRR GRKKSIVSVE 1201 1250 bmy_08893T0/1-1204 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006857/1-1549 PRSLIQGAFQ GCSVSGMTLK YMYGVNAWKN WVQWKNAKEE QGDLKS-GVE BACU009659/1-1420 PRSLIQGAFQ GCSVSGMTLK YMYGVNAWKN WVQWKNAKEE QGDLKC-GVE ENSP00000322915/1-1548 PRSLIQGAFQ GCSVSGMTLK YMYGVNAWKN WVQWKNAKEE QGDLKCGGVE ENSBTAP00000027998/1-1521 PRSLIQGAFQ GCSVSGMTLK YMYGVNAWRN WVQWKNAKEE QGDLKCGGVE 1251 1300 bmy_08893T0/1-1204 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006857/1-1549 HASSSPCSDP LGSAQDHALS QESSEPGCRV RSIKLKEDIL SCTFAELSLG BACU009659/1-1420 HASSSPCSDP LGSAQDHALS QESSEPGCRV RSIKLKEDIL SCTFAELSLG ENSP00000322915/1-1548 QASSSPRSDP LGSTQDHALS QESSEPGCRV RSIKLKEDIL SCTFAELSLG ENSBTAP00000027998/1-1521 HASSSPCSDP LGSTQEHALS QESSEPGCKV RSIKLKEDIL SCTFAELSLG 1301 1350 bmy_08893T0/1-1204 ---------- ------VSSS LIFL------ ---------- ---------- ENSTTRP00000006857/1-1549 LCQFIQEVRR PNGEKYDPDS ILYLCLGIQQ XXXXXXXXXX XXXXXXXXXX BACU009659/1-1420 LCQFIQEVRR PNGEKYDPDS ILYLCLGIQQ YLFENGRIDN IFTEPYSRFM ENSP00000322915/1-1548 LCQFIQEVRR PNGEKYDPDS ILYLCLGIQQ YLFENGRIDN IFTEPYSRFM ENSBTAP00000027998/1-1521 LCQFIQEVRR PNGEKYDPDS ILYLCLGIQQ YLFENGRIDN IFTEPYSRFM 1351 1400 bmy_08893T0/1-1204 ---------- ---------- ---------- ------AFSF LCCFPTLYFY ENSTTRP00000006857/1-1549 XXXXXXXXXX XXXXXXXXYM FSRIEEEHLW ECKQLGAYSP IVLLNTLLFF BACU009659/1-1420 IELTKLLKIW EPTILPNGYM FSRIEEEHLW ECKQLGAYSP IVLLNTLLFF ENSP00000322915/1-1548 IELTKLLKIW EPTILPNGYM FSRIEEEHLW ECKQLGAYSP IVLLNTLLFF ENSBTAP00000027998/1-1521 IELTKLLKIW EPTILPNGYM FSRIEEEHLW ECKQLGAYSP IVLLNTLLFF 1401 1450 bmy_08893T0/1-1204 ---------- ------AFVF VFLNSKTVSF -----ILYFF RR-------- ENSTTRP00000006857/1-1549 NTKYFQLKNV TEHLKLSFAH VMRRTRTLKY STKMTYLRFF PPSQKQETEP BACU009659/1-1420 NTKYFQLKNV TEHLKLSFAH VMRRTRTLKY STKMTYLRFF PPSQKQETEP ENSP00000322915/1-1548 NTKYFQLKNV TEHLKLSFAH VMRRTRTLKY STKMTYLRFF PPLQKQESEP ENSBTAP00000027998/1-1521 NTKYFQLRNV TEHLQLSFAH VMRRTRTLKY STKMTYLRFF PPSQKQESEP 1451 1500 bmy_08893T0/1-1204 ---------- ---------- -------DFL FC------FY NQR------- ENSTTRP00000006857/1-1549 DKLTVGKRKR SEDDEVPVGV EMAENTDNPL RCPVRLYEFY LSKCSESVKQ BACU009659/1-1420 DKLTVGKRKR SEDDEVPVGV EMAENTDNPL RCPVRLYEFY LSKCSESVKQ ENSP00000322915/1-1548 DKLTVGKRKR NEDDEVPVGV EMAENTDNPL RCPVRLYEFY LSKCSESVKQ ENSBTAP00000027998/1-1521 DKLTIGKRKR NEDDDVPVGV EMAENTDNPL RCPVRLYEFY LSKCSESVKQ 1501 1550 bmy_08893T0/1-1204 ---IFLFV-- ---------F YNRY-----T LSSLLKSLNL AF-------- ENSTTRP00000006857/1-1549 RNDVFYLQPE RSCVPNSPMW YSTFPIDPGT LDTMLTRILM VREVHEELAK BACU009659/1-1420 RNDVFYLQPE RSCVPNSPMW YSTFPIDPGT LDTMLTRILM VREVHEELAK ENSP00000322915/1-1548 RNDVFYLQPE RSCVPNSPMW YSTFPIDPGT LDTMLTRILM VREVHEELAK ENSBTAP00000027998/1-1521 RNDVFYLQPE RSCVPNSPMW YSTFPIDPGT LDTMLTRILM VREVHEELAK 1551 1600 bmy_08893T0/1-1204 ---------- -- ENSTTRP00000006857/1-1549 AKSEDSDVEL SD BACU009659/1-1420 AKSEDSDVEL SD ENSP00000322915/1-1548 AKSEDSDVEL SD ENSBTAP00000027998/1-1521 AKSEDSDVEL SD