KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:36 2014 Check: 00 .. Name: bmy_07301T0/1-493 Len: 708 Check: 9443 Weight: 1.00 Name: ENSP00000316881/1-708 Len: 708 Check: 7222 Weight: 1.00 Name: BACU016520/1-568 Len: 708 Check: 5274 Weight: 1.00 Name: ENSBTAP00000027999/1-706 Len: 708 Check: 348 Weight: 1.00 Name: ENSTTRP00000001775/1-646 Len: 708 Check: 4533 Weight: 1.00 // 1 50 bmy_07301T0/1-493 MRERIWAQLP LLLPWLLLPP PLWGGPPDGR CPEREPEPGP LQPFDLLYAS ENSP00000316881/1-708 MRERIWAPPL LLLLPLLLPP PLWGGPPDSP RRELELEPGP LQPFDLLYAS BACU016520/1-568 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027999/1-706 MRERIWAPLP LLLPWLLLPP PLWCGPPDSR HPEREPEPGP LQPFDLLYAS ENSTTRP00000001775/1-646 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_07301T0/1-493 GVAAYYSGDY EVAVRDLEAA LRSHRRLREI RARCARHCAA RRPL--VPPG ENSP00000316881/1-708 GAAAYYSGDY ERAVRDLEAA LRSHRRLREI RTRCARHCAA RHPLPPPPPG BACU016520/1-568 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000027999/1-706 GVAAYYSGDY ELAVRDLEAA LRSHRRLREI RARCARHCAA RRPL--APPG ENSTTRP00000001775/1-646 -------GDY EVAVRDLEAA LRSHRR-REI RARCARHCAA RCPL--VPPG 101 150 bmy_07301T0/1-493 AGPGAELPFF RALLERARCY RSCQSQRLGG PASRHRASED VRSDFQRRVP ENSP00000316881/1-708 EGPGAELPLF RSLLGRARCY RSCETQRLGG PASRHRVSED VRSDFQRRVP BACU016520/1-568 ----MEVNFQ KTNASSTKVT EKCS------ ---------- ---------- ENSBTAP00000027999/1-706 AGPGAELPFF RALLERARCY RSCQSQRLGG PASRHRASED VRSDFQRRVP ENSTTRP00000001775/1-646 VGPGSELPFF RALLERARCY RSCQSQRLGG PASRHRASED VRSDFQRRVP 151 200 bmy_07301T0/1-493 YNYLQRAYIK LNQLEKAVEA AHTFFMANPE HMEMQQNIKN YRXMAGVEDL ENSP00000316881/1-708 YNYLQRAYIK LNQLEKAVEA AHTFFVANPE HMEMQQNIEN YRATAGVEAL BACU016520/1-568 ---------- LNQLEKAVEA AHTFFMANPE HMEMQQNIKN YRTMAGVEDL ENSBTAP00000027999/1-706 YNYLQRAYIK LNQMEKAVAA AHTFFMANPE HMEMQQNIEN YRTMAGVEDL ENSTTRP00000001775/1-646 YNYLQRAYIK LNQLEKAVEA AHTFFMANPE HMEMQQNIKN YRTMAGVEDL 201 250 bmy_07301T0/1-493 QLVDRDAKPH LESYSEGVKH YEADDFELAI KYFEQALREY FNEDTECRAL ENSP00000316881/1-708 QLVDREAKPH MESYNAGVKH YEADDFEMAI RHFEQALREY FVEDTECRTL BACU016520/1-568 QLVDRDAKPH LESYSEGVKH YEADDFELAI KYFEQALREY FNEDTECRAL ENSBTAP00000027999/1-706 QLVDREAKPH LESYSAGVKH YEADDFELAI KYFEQALREY FNEDMECRAL ENSTTRP00000001775/1-646 QLVDRDAKPH LESYSEGVKH YEADDFELAI KYFEQALREY FNEDTECRAL 251 300 bmy_07301T0/1-493 Y--------- ---------- -----HYVQV LVCQHECVRE LATRPGRLSP ENSP00000316881/1-708 CEGPQRFEEY EYLGYKAGLY EAIADHYMQV LVCQHECVRE LATRPGRLSP BACU016520/1-568 CEGPQRFEEY EYLGYKAGLY EAIADHYVQV LVCQHECVRE LATRPGRLSP ENSBTAP00000027999/1-706 CEGPQRFEEY EYLGYKAGLY EAIADHYMQV LVCQHECVRE LATRPGRLSP ENSTTRP00000001775/1-646 CEGPQRFEEY EYLGYKAGLY EAIADHYVQV LVCQHECVRE LATRPGRLSP 301 350 bmy_07301T0/1-493 IENFLPLHYD YLQFAYYRVG EYVKALECAK AYLLLHPDDE DVRDNVDYYE ENSP00000316881/1-708 IENFLPLHYD YLQFAYYRVG EYVKALECAK AYLLCHPDDE DVLDNVDYYE BACU016520/1-568 IENFLPLHYD YLQFAYYRVG EYVKALECAK AYLLLHPDDE DVRDNVDYYE ENSBTAP00000027999/1-706 IENFLPLHYD YLQFAYYRVG EYIKALECAK AYLLLHPDDE DVLDNVDYYE ENSTTRP00000001775/1-646 IENFLP-HYD Y-QFAYYRVG EYVKALECAK AYLLLHPDDE DVRDNVDYYE 351 400 bmy_07301T0/1-493 SLLDDSTDPA SIQAREDLAM FVKHHNLESE LIKSAAEGLG FSYTEPNYWI ENSP00000316881/1-708 SLLDDSIDPA SIEAREDLTM FVKRHKLESE LIKSAAEGLG FSYTEPNYWI BACU016520/1-568 SLLDDSTDPA SIQAREDLAM FVKHHNLESE LIKSAAEGLG FSYTEPNYWI ENSBTAP00000027999/1-706 SLLGDSADPA SIEAREDLAM FVKRHKLESE LIKSAAEGLG FSYTEPNYWI ENSTTRP00000001775/1-646 SLLDDSIDPA SIQAREDLAM FVKHHKLESK LIKSAAEGLG FSYTEPNYWI 401 450 bmy_07301T0/1-493 QYGGRQDENQ VPSGVNVEGA EVHGLSTRKK SSPKIDRDLR EGGPLLYENI ENSP00000316881/1-708 RYGGRQDENR VPSGVNVEGA EVHGFSMGKK LSPKIDRDLR EGGPLLYENI BACU016520/1-568 QYGGRQAENQ VPSGVNVEGT EVHGLSTRKK SSPKIDRDLR EGGPLLYENI ENSBTAP00000027999/1-706 RYGGRQDENR VPSGVNVEVA EVHGLSMGKK SLPKIDRDLR EGGPLLYENI ENSTTRP00000001775/1-646 QYGGRQDENQ VPSGVNAEGA EVHGLPAQKK SSPKIDRDLG EGGPLLYENI 451 500 bmy_07301T0/1-493 TFVYNSKQLN GTQRVLLDNV LSEEQCRELH SVAS------ ------VRPG ENSP00000316881/1-708 TFVYNSEQLN GTQRVLLDNV LSEEQCRELH SVASGIMLVG DGYRGKTSPH BACU016520/1-568 TFVYNSEQLN GTQRVLLDNV LSEEQCRELH SVASGIMLVG DGYRGKTSPH ENSBTAP00000027999/1-706 TFVYNSEQLN GTQRVLLDNV LSEEQCRELH SVASGIMLVG DGYRGKTSPH ENSTTRP00000001775/1-646 TFVYNSEQLN GTQRVLLDNV LSEEQCRELH SVASGIMLVG DGYRGKTSPH 501 550 bmy_07301T0/1-493 SP-------- ---------- ---------- ---------- ---------- ENSP00000316881/1-708 TPNEKFEGAT VLKALKSGYE GRVPLKSARL FYDISEKARR IVESYFMLNS BACU016520/1-568 TPNEKFEGAT VLKALKFGYE GRVPLKSARL FYDISEKARK IVESYFMLNS ENSBTAP00000027999/1-706 TPNEKFEGAT VLKALKFGYE GRVPLKSARL FYDISEKARK IVESYFMLNS ENSTTRP00000001775/1-646 TPNEKFEGAT VLRALKFGYE GRVSLKSARL FYDISEKARK IVESYFMLNS 551 600 bmy_07301T0/1-493 ---------- ---------- ---------- ---------- ---------- ENSP00000316881/1-708 TLYFSYTHMV CRTALSGQQD RRNDLSHPIH ADNCLLDPEA NECWKEPPAY BACU016520/1-568 TLYFSYTHMV CRTALSGQQD RRNDLSHPIH ADNCLLDPEA NECWKEPPAY ENSBTAP00000027999/1-706 TLYFSYTHMV CRTALSGQQD RRNDLSHPIH ADNCLLDPEA NECWKEPPAY ENSTTRP00000001775/1-646 TLYFSYTHMV CRTALSGQQD RRNDLSHPIH ADNCLLDPEA NECWKEPPAY 601 650 bmy_07301T0/1-493 ---------- ---------- ---------- TALVWPEHGR ALVLDLLGAR ENSP00000316881/1-708 TFRDYSALLY MNDDFEGGEF IFTEMDAKTV TASIKPKCGR MISFSSGGEN BACU016520/1-568 TFRDYSALLY MNDDFEGGEF IFTEMDAKTV TASIKPKCGR MISFSSGGEN ENSBTAP00000027999/1-706 TFRDYSALLY MNDDFEGGEF IFTEMDAKTV TASIKPKCGR MISFSSGGEN ENSTTRP00000001775/1-646 TFRDYSALLY MNDDFEGGEF IFTEMDAKTV TASIKPKCGR MISFSSGGEN 651 700 bmy_07301T0/1-493 KPGLKC---- --------YL L--------- ---------- ---------- ENSP00000316881/1-708 PHGVKAVTKG KRCAVALWFT LDPLYRELER IQADEVIAIL DQEQQGKHEL BACU016520/1-568 PHGVKAVTKG QRCAVALWFT LDPLYRELER IQADEVIAIL DQEQQGKHKP ENSBTAP00000027999/1-706 PHGVKAVTKG QRCAVALWFT LDPLYRELER IQADEVIAIL DQEQQGKHEL ENSTTRP00000001775/1-646 PHGVKAVTKG QRCAVALWFT LDPLYRELER TQADEVIAIL DQAQQGKHKP 701 750 bmy_07301T0/1-493 -------- ENSP00000316881/1-708 NINPKDEL BACU016520/1-568 NINPKDEL ENSBTAP00000027999/1-706 NINPKDEL ENSTTRP00000001775/1-646 KINPKDEL