KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:37 2014 Check: 00 .. Name: ENSP00000368144/1-368 Len: 401 Check: 8020 Weight: 1.00 Name: bmy_12114T0/1-241 Len: 401 Check: 5295 Weight: 1.00 Name: ENSBTAP00000028004/1-368 Len: 401 Check: 6063 Weight: 1.00 Name: BACU008909/1-328 Len: 401 Check: 5699 Weight: 1.00 Name: ENSTTRP00000008271/1-368 Len: 401 Check: 6220 Weight: 1.00 // 1 50 ENSP00000368144/1-368 MTRGFAPILP VEFHKMGSFR RPRPRFMSSP VLSDLPRFQA ARQALQLSSS bmy_12114T0/1-241 ---------- ---------- ---MWLVADP ASSHLPTL-- ----LPLS-- ENSBTAP00000028004/1-368 MTRGFAPSLP VEFPKMGSFR RPRPRFMSSP ALSDLPRFQA ARQALQLSSN BACU008909/1-328 ---------- ---------- ------MSSP ALSDLPRFQA ARQALQLSSN ENSTTRP00000008271/1-368 MTRGFAPSLP VEFPKMGSFR RPRPRFMSSP ALSDLPRFQA ARQALQLSSN 51 100 ENSP00000368144/1-368 SAWNSVQTAV INVFKGGGLQ SNELYALNEN IRRLLKSELG SFITDYFQNQ bmy_12114T0/1-241 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028004/1-368 SAWNSVQTAV INVFKGGGLQ SNELYALNEN IRRLLKSELG SFITDYFQNQ BACU008909/1-328 SAWNSVQTAV INVFKGGGLQ SNELYTLNEN IRRLLKSELG SFITDYFQNQ ENSTTRP00000008271/1-368 SAWNSVQTAV INVFKGGGLQ SNELYTLNEN IRRLLKSELG SFITDYFQNQ 101 150 ENSP00000368144/1-368 LLAKGLFFVE EKIKLCEG-- ---------- ---------- ---------- bmy_12114T0/1-241 ---------- -----CQG-- ---------- ---------- ---------- ENSBTAP00000028004/1-368 LLAKGLLFVE EKIKLCEG-- ---------- ---------- ---------- BACU008909/1-328 LLAKGLLFVE EKIKLCEGKY KAAPVRRASD SAFDAWTAGM LLSQRGRLQA ENSTTRP00000008271/1-368 LLAKGLLFVE EKIKLCEG-- ---------- ---------- ---------- 151 200 ENSP00000368144/1-368 -ENRIEVLAE VWDHFFTETL PTLQAIFYPV QGQELTIRQI SLLGFRDLVL bmy_12114T0/1-241 ---------- ---------- ---------- --QELTIRQI SLLGFRDLVL ENSBTAP00000028004/1-368 -ENRIEVLAE VWDHFFTETL PTLQAIFYPV QGQELTIRQI SLLGFRDLVL BACU008909/1-328 RENRIEVLAE VWDHFFTETL PTLQAIFYPV ---------- ---------- ENSTTRP00000008271/1-368 -ENRMEVLAD VWDHFFTETL PTLQAIFYPV QGQELTIRQI SLLGFRDLVL 201 250 ENSP00000368144/1-368 LKVKLGDLLL LAQSKLPSSI VQMLLILQSV HEPTGPSESY LQLEELVKQV bmy_12114T0/1-241 LKVKLDDLLL LAQPQLPSSI VQMLLILQSV HEPTGPSEGY LQLEELVKQV ENSBTAP00000028004/1-368 LKVKLEDLLL LAQPQLPSSI VQMLLILQSV HEPTGPSEGY LQLEELVKQV BACU008909/1-328 ---------- ---------- -------QSV HEPTGPSEGY LQLEELVKQV ENSTTRP00000008271/1-368 LKVKLDDLLL LAQPQLPSSI VQMLLILQSV HEPTGPSEGY LQLEELVKQV 251 300 ENSP00000368144/1-368 VSPFLGISGD RSFSGPTYTL ARRHSRVRPK VTVLNYASPI TAVSRPLNEM bmy_12114T0/1-241 VSPFLGISED RSVSGPTYTL ARRHSRARPK VTLLNYASPM TTVSRPLNEM ENSBTAP00000028004/1-368 VSPFLGISED RGLSGPTYTL ARRHSRVRPK VTLLNYASPI TPVSRPLNEM BACU008909/1-328 VSPFLGISED CSVSGPTYTL ARRHSRARPK VTLLNYACPM TTVSRPLNEM ENSTTRP00000008271/1-368 VSPFLGISED RSVSGPTYTL ARRHSRARPK VTLLSYASPM TAVSRPLNEM 301 350 ENSP00000368144/1-368 VLTPLTEQEG EAYLEKCGSV RRHTVANAHS DIQLLAMATM MHSGLGEEAS bmy_12114T0/1-241 ALTPLTEQEG EAYLEKCGSV RRHTVANAHS DIQLLAMATR MHSGLGEEPG ENSBTAP00000028004/1-368 ALTPLTEQEG EAYLEKCGSV RRHTVANAHS DIQLLAMATM MHSGLGEESG BACU008909/1-328 ALTPLTEQEG EAYLEKCGSV RRHTVANAHS DIQLLAMATR MHSGLGEEPG ENSTTRP00000008271/1-368 ALTPLTEQEG EAYLEKCGSV RRHTVANAHS DIQLLAMATR MHSGLGEEPG 351 400 ENSP00000368144/1-368 SENKCLLLPP SFPPPHRQCS SEPNITDNPD GLEEGARGSQ EGSELNCASL bmy_12114T0/1-241 GEDKCLLLPP SFPPPHRQCS SEPNITDGPD EPEQVTAGSQ EDSELNCASL ENSBTAP00000028004/1-368 GEDKCLLLQP SFPPPHRQCS SEPNITDGPD EPEQGATGSQ EDSELNCASL BACU008909/1-328 GEDKCLLLPP SFPPPHRQCS SEPNITDSPD EPEQVAAGSQ EDSELNCASL ENSTTRP00000008271/1-368 GEDKCLLLPP SFPPPHRQCS SEPNITDGPD EPEQVAAGSQ EDSELNCSSL 401 450 ENSP00000368144/1-368 S bmy_12114T0/1-241 S ENSBTAP00000028004/1-368 S BACU008909/1-328 S ENSTTRP00000008271/1-368 S