KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:38 2014 Check: 00 .. Name: BACU004028/1-578 Len: 579 Check: 8536 Weight: 1.00 Name: ENSBTAP00000028017/1-245 Len: 579 Check: 8886 Weight: 1.00 Name: ENSP00000471536/1-246 Len: 579 Check: 8768 Weight: 1.00 Name: bmy_11764T0/1-246 Len: 579 Check: 9931 Weight: 1.00 Name: ENSTTRP00000009256/1-246 Len: 579 Check: 9943 Weight: 1.00 // 1 50 BACU004028/1-578 MRQVHLWSGP -AHLPCLNSP YRLHTQQVGT VAELWIYPVK SCKGVSVKAA ENSBTAP00000028017/1-245 -----MTTGD CCHLP----- --------GS LCD------- -CSDSPAFSK ENSP00000471536/1-246 -----MTTGD CCHLP----- --------GS LCD------- -CSGSPAFSK bmy_11764T0/1-246 -----MTTGD CCHLP----- --------GS LCD------- -CSDSPAFSK ENSTTRP00000009256/1-246 -----MTTGD CCHLP----- --------GS LCD------- -CSDSPAFSK 51 100 BACU004028/1-578 ECTALGLRSG HLRDRFWLVI KEDGHMVTAR QEPRLVLVST TYEDDCLILR ENSBTAP00000028017/1-245 VVEATGLGPP QYVAQ---VT SRDGRLLST- ---------- -------VIR ENSP00000471536/1-246 VVEATGLGPP QYVAQ---VT SRDGRLLST- ---------- -------VIR bmy_11764T0/1-246 VVEATGLGPP QYVAQ---VT SRDGRLLST- ---------- -------VIR ENSTTRP00000009256/1-246 VVEATGLGPP QYVAQ---VT SRDGRLLST- ---------- -------VIR 101 150 BACU004028/1-578 APGMDQLVLP SKPRSSNKIH DCRVFGLDIQ GRDCGNEAAQ WFTNFLKTEA ENSBTAP00000028017/1-245 A-----LETP SDGPFCRICH E--------- ---------- ---------- ENSP00000471536/1-246 A-----LDTP SDGPFCRICH E--------- ---------- ---------- bmy_11764T0/1-246 A-----LDTP SDGPFCRICH E--------- ---------- ---------- ENSTTRP00000009256/1-246 A-----LDTP SDGPFCRICH E--------- ---------- ---------- 151 200 BACU004028/1-578 FRMVQFEKNM KGRPSSKIFP SVGQNYQVAY PDCGPIMILS EASLEDLNTR ENSBTAP00000028017/1-245 ---------- ---------- --GANGESLL SPCGCSGTLG AVH----KSC ENSP00000471536/1-246 ---------- ---------- --GANGECLL SPCGCTGTLG AVH----KSC bmy_11764T0/1-246 ---------- ---------- --GANGESLL SPCGCTGTLG AVH----KSC ENSTTRP00000009256/1-246 ---------- ---------- --GANGESLL SPCGCTGTLG AVH----KSC 201 250 BACU004028/1-578 LEKKVKMDNF RPNIVVAGSN AFEEDTWGEL LIGDVEMKKV LACPRCVMTT ENSBTAP00000028017/1-245 LER------- ---------- ------W--- ----LSSSNT SYCELC---- ENSP00000471536/1-246 LEK------- ---------- ------W--- ----LSSSNT SYCELC---- bmy_11764T0/1-246 LER------- ---------- ------W--- ----LSSSNT SYCELC---- ENSTTRP00000009256/1-246 LER------- ---------- ------W--- ----LSSSNT SYCELC---- 251 300 BACU004028/1-578 VDPDTGVINR KEPLETLKSY RLCDPSEKPI YQSSPLFGMY YSVEKIGSLK ENSBTAP00000028017/1-245 -HTEFAVEKR SRSLTEW--- -LKDPGPRTE KRT------- ---------- ENSP00000471536/1-246 -HTEFAVEKR PRPLTEW--- -LKDPGPRTE KRT------- ---------- bmy_11764T0/1-246 -HTEFAVEKR PRPLTEW--- -LKDPGPRTE KRT------- ---------- ENSTTRP00000009256/1-246 -HTEFAVEKR PRPLTEW--- -LKDPGPRTE KRT------- ---------- 301 350 BACU004028/1-578 VGDPVYQMSC KGVSVKAAEC TALGLRSGHL RDRFWLVINK EGNMVTARQE ENSBTAP00000028017/1-245 -------LCC DVVCFLF--I TPLAAISG-- ----WLCLR- -GAQDHLRLH ENSP00000471536/1-246 -------LCC DMVCFLF--I TPLAAISG-- ----WLCLR- -GAQDHLRLH bmy_11764T0/1-246 -------LCC DMVCFLF--I TPLAAISG-- ----WLCLR- -GAQDHLRLH ENSTTRP00000009256/1-246 -------LCC DMVCFLF--I TPLAAISG-- ----WLCLR- -GAQDHLRLH 351 400 BACU004028/1-578 PRLVLISLTC KGDTLTLSAA YTKDLRLPIK TPTINAVHKC RVQGLEIEGR ENSBTAP00000028017/1-245 SHLEALGLIA L--TIALFTI YV-------- ---------- ---------- ENSP00000471536/1-246 SQLEAVGLIA L--TIALFTI YV-------- ---------- ---------- bmy_11764T0/1-246 SRLEAVGLIA L--TIALFTI YV-------- ---------- ---------- ENSTTRP00000009256/1-246 SRLEAVGLIA L--TIALFTI YV-------- ---------- ---------- 401 450 BACU004028/1-578 DCGEAAAQWI TNFLKTQPYR LVHFEPHMQP RNSHQIEHPF RPTDQIPYSD ENSBTAP00000028017/1-245 ---------- -------LWT LVSFRYH--- ---------- ---------- ENSP00000471536/1-246 ---------- -------LWT LVSFRYH--- ---------- ---------- bmy_11764T0/1-246 ---------- -------LWT LVSFRYH--- ---------- ---------- ENSTTRP00000009256/1-246 ---------- -------LWT LVSFRYH--- ---------- ---------- 451 500 BACU004028/1-578 ASPFLILSEA SLADLNSRLE KKVKATNFRP NIIISGCGVY AEDSWNELLI ENSBTAP00000028017/1-245 ---------- ---------- ---------- ------CQLY SE--W----- ENSP00000471536/1-246 ---------- ---------- ---------- ------CQLY SE--W----- bmy_11764T0/1-246 ---------- ---------- ---------- ------CQLY SE--W----- ENSTTRP00000009256/1-246 ---------- ---------- ---------- ------CQLY SE--W----- 501 550 BACU004028/1-578 GDVELKRVMA CSRCILTTVD PDTGVMSRKE PLETLKSYRL CDPSERKLYG ENSBTAP00000028017/1-245 -----RRTNQ KVRLKMQA-D GSEG--SQHS P--------L AAGLLKKVAE ENSP00000471536/1-246 -----RKTNQ KVRLKIREAD SPEG--PQHS P--------L AAGLLKKVAE bmy_11764T0/1-246 -----RRTNQ KVRLKIRATD GPEG--TQHS P--------L AAGLLKKVAE ENSTTRP00000009256/1-246 -----RRTNQ KVRLKIRATD GPEG--TQHS S--------L AAGLLKKVAE 551 600 BACU004028/1-578 KSPLFGQYFV LENPGTVQVG DPVYLLGQE ENSBTAP00000028017/1-245 ETPV------ ---------- --------- ENSP00000471536/1-246 ETPV------ ---------- --------- bmy_11764T0/1-246 ETPV------ ---------- --------- ENSTTRP00000009256/1-246 ETPV------ ---------- ---------