KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:38 2014 Check: 00 .. Name: ENSTTRP00000006994/1-845 Len: 896 Check: 3868 Weight: 1.00 Name: ENSP00000351407/1-789 Len: 896 Check: 3615 Weight: 1.00 Name: ENSBTAP00000028023/1-782 Len: 896 Check: 3069 Weight: 1.00 Name: BACU007236/1-793 Len: 896 Check: 8750 Weight: 1.00 Name: bmy_11138T0/1-747 Len: 896 Check: 2263 Weight: 1.00 // 1 50 ENSTTRP00000006994/1-845 LDSAVALAAV RRRVWGVALP SPSPVPWRWL LPGGCGGGGI YSYGGDYCSR ENSP00000351407/1-789 MAATTANP-- ---------- ---------- ---------- ---------- ENSBTAP00000028023/1-782 ---------- ---------- ---------- ---------- ---------- BACU007236/1-793 ---------- ---------- ---------- ---------- ---------- bmy_11138T0/1-747 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006994/1-845 XXXXXXXXXX XXXXXXXXXM TSDVPSLGPA IASGNPGPGI QGGGAIVQRA ENSP00000351407/1-789 ---------- --------EM TSDVPSLGPA IASGNSGPGI QGGGAIVQRA ENSBTAP00000028023/1-782 ---------- --------EM TSDVPPLGPA IASGNPGPGI QGGGAIVQRA BACU007236/1-793 ---------- ---------M TSDVPSLGAA IASGNPGPGI QGGGAIVQRA bmy_11138T0/1-747 ---------- ---------M TSDVPSLGPA IASGNPGPGI QGGGAXVQRA 101 150 ENSTTRP00000006994/1-845 IKRRPGLDFD DDGEGNSKFL RCDDDQMSND KERFARSDDE QSSADKERLA ENSP00000351407/1-789 IKRRPGLDFD DDGEGNSKFL RCDDDQMSND KERFARSDDE QSSADKERLA ENSBTAP00000028023/1-782 IKRRPGLDFD DDGEGNSKFL RCDDDQMSND KERFARSDDE QSSADKERLA BACU007236/1-793 IKRRPGLDFD DDGEGNSKFL RCDDDQMSND KERFARSDDE QSSADKERLA bmy_11138T0/1-747 IKRRPGLDFD DDGEGNSKFL RCDDDQMSND KERFARSDDE QSSADKERLA 151 200 ENSTTRP00000006994/1-845 R--------- ---------- ---------- ---------- -------ENH ENSP00000351407/1-789 R--------- ---------- ---------- ---------- -------ENH ENSBTAP00000028023/1-782 R--------- ---------- ---------- ---------- -------ENH BACU007236/1-793 SSPIEDTEEL LGFPEIQFEN YWIIIFNDDI LFDFEEVIIG DMFYLPWENH bmy_11138T0/1-747 R--------- ---------- ---------- ---------- -------ENH 201 250 ENSTTRP00000006994/1-845 SEIERRRRNK MTAYITELSD MVPTCSALAR KPDKLTILRM AVSHMKSLRG ENSP00000351407/1-789 SEIERRRRNK MTAYITELSD MVPTCSALAR KPDKLTILRM AVSHMKSLRG ENSBTAP00000028023/1-782 SEIERRRRNK MTAYITELSD MVPTCSALAR KPDKLTILRM AVSHMKSLRG BACU007236/1-793 SEIERRRRNK MTAYITELSD MVPTCSALAR KPDKLTILRM AVSHMKSLRG bmy_11138T0/1-747 SEIERRRRNK MTAYITELSD MVPTCSALAR KPDKLTILRM AVSHMKSLRG 251 300 ENSTTRP00000006994/1-845 TGNTSTDGTY KPSFLTDQEL KHLILEAADG FLFIVSCETG RVVYVSDSVT ENSP00000351407/1-789 TGNTSTDGSY KPSFLTDQEL KHLILEAADG FLFIVSCETG RVVYVSDSVT ENSBTAP00000028023/1-782 TGNTSTDGTY KPSFLTDQEL KHLILEAADG FLFIVSCETG RVVYVSDSVT BACU007236/1-793 TGNTSTDGTY KPSFLTDQEL KHLILEAADG FLFIVSCETG RVVYVSDSVT bmy_11138T0/1-747 TGNTSTDGTY KPSFLTDQEL KHLILEAADG FLFIVSCETG RVVYVSDSVT 301 350 ENSTTRP00000006994/1-845 PVLNQPQSEW FGSTLYDQVH PDDVDKLREQ LSTSENALTG RILDLKTGTV ENSP00000351407/1-789 PVLNQPQSEW FGSTLYDQVH PDDVDKLREQ LSTSENALTG RILDLKTGTV ENSBTAP00000028023/1-782 PVLNQPQSEW FGSTLYDQVH PDDVDKLREQ LSTSENALTG RILDLKTGTV BACU007236/1-793 PVLNQPQSEW FGSTLYDQVH PDDVDKLREQ LSTSENALTG RILDLKTGTV bmy_11138T0/1-747 PVLNQPQSEW FGSTLYDQVH PDDVDKLREQ LSTSENALTG RILDLKTGTV 351 400 ENSTTRP00000006994/1-845 KKEGQQSSMR MCMGSRRSFI CRMRCGSSSV DPVSMNRLSF VRNRCRNGLG ENSP00000351407/1-789 KKEGQQSSMR MCMGSRRSFI CRMRCGSSSV DPVSVNRLSF VRNRCRNGLG ENSBTAP00000028023/1-782 KKEGQQSSMR MCMGSRRSFI CRMRCGNSSV DSVSMNRLSF VRNRCRNGLG BACU007236/1-793 KKEGQQSSMR MCMGSRRSFI CRMRCGNSAV DPVSMNRLSF VRNRCRNGLG bmy_11138T0/1-747 KKEGQQSSMR MCMGSRRSFI CRM------- ---------- -----RNGLG 401 450 ENSTTRP00000006994/1-845 SVKDGEPHFV VVHCTGYIKA WPPA-----D DDPEAGQGSK FCLVAIGRLQ ENSP00000351407/1-789 SVKDGEPHFV VVHCTGYIKA WPPAGVSLPD DDPEAGQGSK FCLVAIGRLQ ENSBTAP00000028023/1-782 SAKDGEPHFV VVHCTGYIKA WPPAGVSLPD DDPEAGQGSK FCLVAIGRLQ BACU007236/1-793 SVKDGEPHFV VVHCTGYIKA WPPA------ ---------- ---------- bmy_11138T0/1-747 SVKDGEPHFV VVHCTGYIKA WPPAGVSLPD DDPEAGQGSK FCL------- 451 500 ENSTTRP00000006994/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDHRCVATV GYQPQELLGK ENSP00000351407/1-789 VTSSPNCTDM SNVCQPTEFI SRHNIEGIFT FVDHRCVATV GYQPQELLGK ENSBTAP00000028023/1-782 VTSSPNCTDM SNVCQPTEFI SRHNIEGIFT FVDHRCVATV GYQPQELLGK BACU007236/1-793 --------DM SNVCQPTEFI SRHNIEGIFT FVDHRCVATV GYQPQELLGK bmy_11138T0/1-747 VTSSPNCTDM SNVCQPTEFI SRHNIEGIFT FVDHRCVATV GYQPQELLGK 501 550 ENSTTRP00000006994/1-845 NIVEFCHPED QQLLRDSFQQ VVKLKGQVLS VMFRFRSKNR EWLWMRTSSF ENSP00000351407/1-789 NIVEFCHPED QQLLRDSFQQ VVKLKGQVLS VMFRFRSKNQ EWLWMRTSSF ENSBTAP00000028023/1-782 NIVEFCHPED QQLLRDSFQQ VVKLKGQVLS VMFRFRSKNR EWLWMRTSSF BACU007236/1-793 NIVEFCHPED QQLLRDSFQQ VVKLKGQVLS VMFRFRSKNR EWLWMRTSSF bmy_11138T0/1-747 NIVEFCHPED QQLLRDSFQQ VVKLKGQVLS VMFRFRSKNR EWLWMRTSSF 551 600 ENSTTRP00000006994/1-845 TFQNPYSDEI EYIICTNTNV KNSSQEPRPT LPNTIQRPQL GPTANLSLEM ENSP00000351407/1-789 TFQNPYSDEI EYIICTNTNV KNSSQEPRPT LSNTIQRPQL GPTANLPLEM ENSBTAP00000028023/1-782 TFQNPYSDEI EYIICTNTNV KNSSQEPRPS LSNTIQRPQL GPTANLSLEM BACU007236/1-793 TFQNPYSDEI EYIICTNTNV KNSSQEPRPT LPNTIQRPQL GPTANLSLEM bmy_11138T0/1-747 TFQNPYSDEI EYIICTNTNV KNSSQEPRPT LPNTIQRPQL GPTANLSLEM 601 650 ENSTTRP00000006994/1-845 GSGQLAPRQQ QQQTELDVVQ GRDGLASYNH SQVSVQPVTT TGPEHSKPLE ENSP00000351407/1-789 GSGQLAPRQQ QQQTELDMVP GRDGLASYNH SQV-VQPVTT TGPEHSKPLE ENSBTAP00000028023/1-782 GSGQLAPRQQ QQQTELDVVP GRDGLTSYNH SQVSVQPVTT TGPEHSKPLE BACU007236/1-793 GAGQLAPRQQ QQQTELDVVP GRDGLANYNH SQVSVQPVTT TGPEHSKPLE bmy_11138T0/1-747 GSGQLAPRQQ QQQTELDVVP GRDGLASYNH SQVSVQPVTT TGPEHSKPLE 651 700 ENSTTRP00000006994/1-845 KSEGLFAQDR DPRFSEIYSN INTDQSKGIS SSTVPATQQL FSQGNTFPPT ENSP00000351407/1-789 KSDGLFAQDR DPRFSEIYHN INADQSKGIS SSTVPATQQL FSQGNTFPPT ENSBTAP00000028023/1-782 KSESLFAQDR DPRFSEIYSN ISTDQSKGIS SSTVPATQQL FSQGNTFPPT BACU007236/1-793 KSEGLFAQDR DPRFSEIYSN INTDQSKGIS SSTVPATQQL FSQGNTFPPT bmy_11138T0/1-747 KSEGLFAQDR DPRFSEIYSN INTDQSKGIS SSTVPATQQL FSQGSTFPPT 701 750 ENSTTRP00000006994/1-845 SRPAESFRNS GLAPPVTIVQ PSASAGQMLA QISRHSNPTQ GAAPAWTPST ENSP00000351407/1-789 PRPAENFRNS GLAPPVTIVQ PSASAGQMLA QISRHSNPTQ GATPTWTPTT ENSBTAP00000028023/1-782 PRPAENFRNS GLAPPVTIVQ PSTSAGQMLA QISRHSNPTQ GAAPAWTPST BACU007236/1-793 SRPAENFRNS GLAPPVTIVQ PSASAGQMLA QISRHSNPTQ GAAPAWTPST bmy_11138T0/1-747 SRPAENFRNS GLAPPVTIVQ PSASAGQMLA QISRHSNPTQ GAAPAWTPST 751 800 ENSTTRP00000006994/1-845 RPGFSAQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000351407/1-789 RSGFSAQQVA TQATAKTRTS QFGVGSFQTP SSFSSMSLPG APTASPGAAA ENSBTAP00000028023/1-782 RPGFSAQQVV TQATAKTRSS QFGVGSFQTP SSFSPMSLPG ASTASPGAAA BACU007236/1-793 RPGFSAQQVA TQATAKTRSS QFGVGSFQTP SSFSPMSLPG ASTASPGAAA bmy_11138T0/1-747 RPGFSAQQVA TQATAKTRSS QFGVGNFQTP SSFSPMSLPG ASTASPGAAA 801 850 ENSTTRP00000006994/1-845 XXXXXXXXXX XXPETGQTAG QFQTRTAEGV GVWPQWQGQQ PHHRSSSNEQ ENSP00000351407/1-789 YPSLTNRGSN FAPETGQTAG QFQTRTAEGV GVWPQWQGQQ PHHRSSSSEQ ENSBTAP00000028023/1-782 YPSLTNRGSN FAPETGQTAG QFQTRTAEGV GVWPQWQGQQ SHHRSSSNEQ BACU007236/1-793 YPSLTNRGSN FAPETGQTAG QFQTRTAEGV SVWPQWQGQQ PHHRSTSNEQ bmy_11138T0/1-747 YPSLTN---- -PPETGQTAG QFQTRTAEGV SVWSQWQGQQ PHHRSTSNEQ 851 900 ENSTTRP00000006994/1-845 HVQQPSAQQP GQPEVFQEML SMLGDQSNSY NNEEFPDLTM FPSFSE ENSP00000351407/1-789 HVQQPPAQQP GQPEVFQEML SMLGDQSNSY NNEEFPDLTM FPPFSE ENSBTAP00000028023/1-782 HVQQPSAQQP GQPEVFQEML SMLGDQSNSY NNEEFPDLTM FPSFSE BACU007236/1-793 HVQQPSAQQP GQPEVFQEML SMLGDQSNSY NNEEFPDLTM FPSFSE bmy_11138T0/1-747 HVQQPSAQQP GQPEVFQEML SMLGDQSNSY NNEEFPDLTM FPSFSE