KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:39 2014 Check: 00 .. Name: ENSTTRP00000008733/1-774 Len: 810 Check: 5938 Weight: 1.00 Name: ENSP00000302051/1-775 Len: 810 Check: 3669 Weight: 1.00 Name: ENSBTAP00000028037/1-775 Len: 810 Check: 1589 Weight: 1.00 Name: bmy_04919T0/1-653 Len: 810 Check: 7397 Weight: 1.00 Name: BACU010981/1-775 Len: 810 Check: 3489 Weight: 1.00 // 1 50 ENSTTRP00000008733/1-774 MEAPYSMTAH YDEFQEVKYV SRCGGGGARG TSLPP-FPLS AGRSAPGARA ENSP00000302051/1-775 MEPPYSLTAH YDEFQEVKYV SRCGAGGARG ASLPPGFPLG AARSATGARS ENSBTAP00000028037/1-775 MEAPYSMTAH YDEFQEVKYV SRCGGGGARG TSLPPGFPLG AGRSATGARA bmy_04919T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU010981/1-775 MEAPYSMTAH YDEFQEVKYV SRCGGGGARG TSLPPGFPLS AGRSAPGARA 51 100 ENSTTRP00000008733/1-774 GLPRWNRREV CLLSGLVFAA GLCAILVAML ALKYLGPGAA GGATCSEGCP ENSP00000302051/1-775 GLPRWNRREV CLLSGLVFAA GLCAILAAML ALKYLGPVAA GGGACPEGCP ENSBTAP00000028037/1-775 GLPRWNRREV CLLSGLVFAA GLCAILAAML ALKYLGPGAA GGAACSEGCP bmy_04919T0/1-653 ---------- ---------- --------ML ALKYLGPGAA GGATCSEGCP BACU010981/1-775 GLPRWNRREV CLLSGLVFAA GLCAILAAML ALKYLGPGAA GGATCSEGCP 101 150 ENSTTRP00000008733/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302051/1-775 ERKAFARAAR FLAANLDASI DPCQDFYSFA CGGWLRRHAI PDDKLTYGTI ENSBTAP00000028037/1-775 ERKAFARAAR FLAANLDASI DPCQDFYSFA CGGWLRRHAI PDDKLTYGTI bmy_04919T0/1-653 ERKAFARAAR FLASNLDASI DPCQDFYSFA CGGWLRRHAI PDDKLTYGTI BACU010981/1-775 ERKAFARAAR FLASNLDASI DPCQDFYSFA CGGWLRRHAI PDDKLTYGTI 151 200 ENSTTRP00000008733/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302051/1-775 AAIGEQNEER LRRLLARPGG GPGGAAQRKV RAFFRSCLDM REIERLGPRP ENSBTAP00000028037/1-775 AAIGEQNEER LRRLLARPGG GPGGAAQRKV RAFFRSCLDM REIERLGPRP bmy_04919T0/1-653 AAIGEQNEER LRRLLARSGG GPGGAAQRKV RAFFRSCLDM REIERLGPRP BACU010981/1-775 AAIGEQNEER LRRLLARSGG GPGGAAQRKV RAFFRSCLDM REIERLGPRP 201 250 ENSTTRP00000008733/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302051/1-775 MLEVIEDCGG WDLGGAEERP GVAARWDLNR LLYKAQGVYS AAALFSLTVS ENSBTAP00000028037/1-775 MLEVIEDCGG WDLGGAAERP GAAARWDLNR LLYKAQGVYS AAALFSLTVS bmy_04919T0/1-653 MLEVIEDCGG WDLGGAAERP GAAAPWDLNR LLYKAQGVYS AAALFSLTVS BACU010981/1-775 MLEVIEDCGG WDLGGAAERP GAAAPWDLNR LLYKAQGVYS AAALFSLTVS 251 300 ENSTTRP00000008733/1-774 XXXXXXXXXX XX-------- ---------- --------ID QDGLTLPERT ENSP00000302051/1-775 LDDRNSSRYV IR-------- ---------- --------ID QDGLTLPERT ENSBTAP00000028037/1-775 LDDRNSSRYV IR-------- ---------- --------ID QDGLTLPERT bmy_04919T0/1-653 LDDRNSSRYV IRFALLDGNA VCLQAPGELI SVLHLSPQID QDGLTLPERT BACU010981/1-775 LDDRNSSRYV IR-------- ---------- --------ID QDGLTLPERT 301 350 ENSTTRP00000008733/1-774 LYLAQDEESE KILAAYRVFM ERLLSLLGAE AVEQKAQEIL QLEQQLANIT ENSP00000302051/1-775 LYLAQDEDSE KILAAYRVFM ERVLSLLGAD AVEQKAQEIL QVEQQLANIT ENSBTAP00000028037/1-775 LYLAQDEESE KILAAYRVFM ERLLSLLGAE AVEQKAREIL QLEQRLANIT bmy_04919T0/1-653 LYLAQDEESE KILAAYRVFM ERLLSLLGAE AVEEKAREIL QLEQQLANIT BACU010981/1-775 LYLAQDEESE KILAAYRVFM ERLLSLLGAE AVEEKAREIL QLEQQLANIT 351 400 ENSTTRP00000008733/1-774 VSEYDDLWRD VSSIYNKVTL GQLQKITPHL RWKWLLDQIF QEDFSEDEEL ENSP00000302051/1-775 VSEHDDLRRD VSSMYNKVTL GQLQKITPHL RWKWLLDQIF QEDFSEEEEV ENSBTAP00000028037/1-775 VSEYDDLRRD VSSVYNKVTL GQLQKITPHL RWKWLLDQIF QEDFSEDEEV bmy_04919T0/1-653 VSEYDDLRRD VSSVYNKVTL GQLQKITPHL QWKWLLDQIF QEDFSEDEEL BACU010981/1-775 VSEYDDLRRD VSSVYNKVTL GQLQKITPHL RWKWLLDQIF QEDFSEDEEL 401 450 ENSTTRP00000008733/1-774 VLLATDYMQQ VSQLIRSTPR RILHNYLVWR VVVVLSEHLS PPFREALHEL ENSP00000302051/1-775 VLLATDYMQQ VSQLIRSTPH RVLHNYLVWR VVVVLSEHLS PPFREALHEL ENSBTAP00000028037/1-775 VLLATDYMQQ VSQLIRSTPR RILHNYLVWR VVVVLSEHLS PPFREALHEL bmy_04919T0/1-653 VLLATDYMQQ VSQLIRSTPR RILHNYLVWR VVVVLSEHLS PPFREALHEL BACU010981/1-775 VLLATDYMQQ VSQLIRSTPR RILHNYLVWR VVVVLSEHLS PPFREALHEL 451 500 ENSTTRP00000008733/1-774 AREMEGSDKP QELARVCLGQ ANRHFGMALG ALFVHEHFSA ASKAKVQQLV ENSP00000302051/1-775 AQEMEGSDKP QELARVCLGQ ANRHFGMALG ALFVHEHFSA ASKAKVQQLV ENSBTAP00000028037/1-775 AREMEGSDKP QELARVCLGQ ANRHFGMALG ALFVHEHFSA ASKAKVQQLV bmy_04919T0/1-653 AREMEGSDKP QELARVCLGQ ANRHFGMALG ALFVHEHFSA ASK------- BACU010981/1-775 AREMEGSDKP QELARVCLGQ ANRHFGMALG ALFVHEHFSA ASKAKVQQLV 501 550 ENSTTRP00000008733/1-774 EDIKYILGQR LEELDWMDAE TKAAAQAKLQ YMMVMVGYPD FLLKPEAVDK ENSP00000302051/1-775 EDIKYILGQR LEELDWMDAE TRAAARAKLQ YMMVMVGYPD FLLKPDAVDK ENSBTAP00000028037/1-775 EDIKYILGQR LEELDWMDAE TKAAARAKLQ YMMVMVGYPD FLLKPEAVDK bmy_04919T0/1-653 ---------- ---------- ------AKLQ YMMVMVGYPD FLLKPEAVDK BACU010981/1-775 EDIKYILGQR LEELDWMDAE TKAAARAKLQ YMMVMVGYPD FLLKPEAVDK 551 600 ENSTTRP00000008733/1-774 EYEFEVHEKT YFKNILNSIR FSIQLSVKKI RQEVDKSTWL LPPQALNAYY ENSP00000302051/1-775 EYEFEVHEKT YFKNILNSIR FSIQLSVKKI RQEVDKSTWL LPPQALNAYY ENSBTAP00000028037/1-775 EYEFEVHEKT YFKNILNSIR FSIQLSVKKI RQEVDKSTWL LPPQALNAYY bmy_04919T0/1-653 EYEFEVHEKT YFKNILNSIR FSIQLSVKKI RQEVDKSTWL LPPQALNAYY BACU010981/1-775 EYEFEVHEKT YFKNILNSIR FSIQLSVKKI RQEVDKSTWL LPPQALNAYY 601 650 ENSTTRP00000008733/1-774 LPNKNQMVFP AGILQPTLYD PDFPQSLNYG GIGTIIGHEL THGYDDWGGQ ENSP00000302051/1-775 LPNKNQMVFP AGILQPTLYD PDFPQSLNYG GIGTIIGHEL THGYDDWGGQ ENSBTAP00000028037/1-775 LPNKNQMVFP AGILQPTLYD PDFPQSLNYG GIGTIIGHEL THGYDDWGGH bmy_04919T0/1-653 LPNKNQMVFP AGILQPTLYD PDFPQSLNYG GIGTIIGHEL THGYDDWGGQ BACU010981/1-775 LPNKNQMVFP AGILQPTLYD PDFPQSLNYG GIGTIIGHEL THGYDDWGGQ 651 700 ENSTTRP00000008733/1-774 YDRSGNLLHW WTEDSHSRFL RKAECIVHLY DNFTVYNQRV NGKHTLGENI ENSP00000302051/1-775 YDRSGNLLHW WTEASYSRFL RKAECIVRLY DNFTVYNQRV NGKHTLGENI ENSBTAP00000028037/1-775 YDRSGSLLHW WTEASYGRFL RKAECIVHLY DNFTVYNQRV NGKHTLGENI bmy_04919T0/1-653 YDRSGNLLHW WTEDSHSRFL RKAECIVHLY DNFTVYNQRV NGKHTLGENI BACU010981/1-775 YDRSGNLLHW WTEDSHSRFL RKAECIVHLY DNFTVYNQRV NGKHTLGENI 701 750 ENSTTRP00000008733/1-774 ADMGGLKLAY YAYQKWVREH GPEHPLHRLK YTHNQLFFIA FAQNWCIKRR ENSP00000302051/1-775 ADMGGLKLAY HAYQKWVREH GPEHPLPRLK YTHDQLFFIA FAQNWCIKRR ENSBTAP00000028037/1-775 ADMGGLKLAY YAYQKWVREH GPEHPLHRLK YTHNQLFFIA FAQNWCIKRR bmy_04919T0/1-653 ADMGGLKLAY Y--------- ---------- ---------- ---------- BACU010981/1-775 ADMGGLKLAY YAYQKWVREH GPEHPLHRLK YTHNQLFFIA FAQNWCIKRR 751 800 ENSTTRP00000008733/1-774 SQSIYLQVLT DKHAPEHYRV LGSVSQFEEF GRAFHCPKDS PMNPAHKCSV ENSP00000302051/1-775 SQSIYLQVLT DKHAPEHYRV LGSVSQFEEF GRAFHCPKDS PMNPAHKCSV ENSBTAP00000028037/1-775 SQSIYLQVLT DKHAPEHYRV LGSVSQFEEF GRAFHCPKDS PMNPAHKCSV bmy_04919T0/1-653 -------VLT DKHAPEHYRV LGSVSQFEEF GRAFHCPKDS PMNPAHKCSV BACU010981/1-775 SQSIYLQVLT DKHAPEHYRV LGSVSQFEEF GRAFHCPKDS PMNPAHKCSV 801 850 ENSTTRP00000008733/1-774 W--------- ENSP00000302051/1-775 W--------- ENSBTAP00000028037/1-775 W--------- bmy_04919T0/1-653 WAPHPSPKLA BACU010981/1-775 W---------