KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:34:45 2014 Check: 00 .. Name: ENSTTRP00000016286/1-832 Len: 845 Check: 6090 Weight: 1.00 Name: bmy_00034T0/1-845 Len: 845 Check: 8876 Weight: 1.00 Name: ENSBTAP00000028054/1-830 Len: 845 Check: 6355 Weight: 1.00 Name: ENSP00000259746/1-832 Len: 845 Check: 9597 Weight: 1.00 Name: BACU015815/1-805 Len: 845 Check: 5462 Weight: 1.00 // 1 50 ENSTTRP00000016286/1-832 MLPFLLATLG TTALNNSNPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM bmy_00034T0/1-845 MLPFLLATLG TTALNNSNPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM ENSBTAP00000028054/1-830 MLPFLLATLG TMALNSSSPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM ENSP00000259746/1-832 MLPFLLATLG TTALNNSNPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM BACU015815/1-805 MLPFLLATLG TTALNNSNPK DYCYSARIRS TVLQGLPFGG VPTVLALDFM 51 100 ENSTTRP00000016286/1-832 CFLALLFLFS ILRKVAWDYG RLALVTDADR RQRQERDRVE QEYVASAMHG bmy_00034T0/1-845 CFLALLFLFS ILRKVAWDYG RLALVTDADR RQRQERDRVE QEYVASAMHG ENSBTAP00000028054/1-830 CFLALLFLFS ILRKVAWDYG RLALVTDADR RRRQERDRVE QEYVASAMHG ENSP00000259746/1-832 CFLALLFLFS ILRKVAWDYG RLALVTDADR LRRQERDRVE QEYVASAMHG BACU015815/1-805 CFLALLFLFS ILRKVAWDYG RLALVTDADR RQRQERDRVE QEYVASAMHG 101 150 ENSTTRP00000016286/1-832 DSHDRYERLT SVSSSVDFDQ RDNXXX---- ---------X XXXXXXXXXD bmy_00034T0/1-845 DSHDRYERLT SVSSSVDFDQ RDNTSLGAGE QEIAAHSDPG LVPLGHPGRD ENSBTAP00000028054/1-830 DSHDRYERLT SVSSSVDFDQ RDNGFC---- ---------S WLTAIFRIKD ENSP00000259746/1-832 DSHDRYERLT SVSSSVDFDQ RDNGFC---- ---------S WLTAIFRIKD BACU015815/1-805 DSHDRYERLT SVSSSVDFDQ RDNGFC---- ---------S WLTAIFRIKD 151 200 ENSTTRP00000016286/1-832 DEIRDKCGGD AVHYLSFQRH IIGLLVVVGV LSVGIVLPVN FSGDLLEXXX bmy_00034T0/1-845 DEIRDKCGGD AVHYLSFQRH IIGLLVVVGV LSVGIVLPVN FSGDLLENNA ENSBTAP00000028054/1-830 DEIRDKCGGD AVHYLSFQRH IIGLLVAVGV LSVGIVLPVN FSGDLLENNA ENSP00000259746/1-832 DEIRDKCGGD AVHYLSFQRH IIGLLVVVGV LSVGIVLPVN FSGDLLENNA BACU015815/1-805 DEIRDKCGGD AVHYLSFQRH IIGLLVVVGV LSVGIVLPVN FSGDLLENNA 201 250 ENSTTRP00000016286/1-832 XXXXXXXXXX XXXXNNLLWL HTSFAFLYLL LTVYSMRRHT SKMRYKEDDL bmy_00034T0/1-845 YSFGRTTIAN LKSGNNLLWL HTSFAFLYLL LTVYSMRRHT SKMRYKEDDL ENSBTAP00000028054/1-830 YSFGRTTIAN LKSGNNLLWL HTSFAFLYLL LTVYSMRRHT SKMRYKEDDL ENSP00000259746/1-832 YSFGRTTIAN LKSGNNLLWL HTSFAFLYLL LTVYSMRRHT SKMRYKEDDL BACU015815/1-805 YSFGRTTIAN LKSGNNLLWL HTSFAFLYLL LTVYSMRRHT SKMRYKEDDL 251 300 ENSTTRP00000016286/1-832 VKRTLFINGI SKYAESEKIK KHFEEAYPNC TVLEARPCYN VARLMFLDAE bmy_00034T0/1-845 VKRTLFINGI SKYAESEKIK KHFEEAYPNC TVLEARPCYN VARLMFLDAE ENSBTAP00000028054/1-830 VKRTLFINGI SKYAESEKIK KHFEEAYPNC TVLEARPCYN VARLMFLDAE ENSP00000259746/1-832 VKRTLFINGI SKYAESEKIK KHFEEAYPNC TVLEARPCYN VARLMFLDAE BACU015815/1-805 VKRTLFINGI SKYAESEKIK KHFE------ ---------- ---------- 301 350 ENSTTRP00000016286/1-832 RKKAERGKLY FTNLQSKDNV PTMINPKPCG HLCCCVVQGC EQVEAIEYYT bmy_00034T0/1-845 RKKAERGKLY FTNLQSKDNV PTMINPKPCG HLCCCVVQGC EQVEAIEYYT ENSBTAP00000028054/1-830 RKKAERGKLY FTNLQSKDNV PTMINPKPCG HLCCCVVRGC EQVEAIEYYT ENSP00000259746/1-832 RKKAERGKLY FTNLQSKENV PTMINPKPCG HLCCCVVRGC EQVEAIEYYT BACU015815/1-805 -KKAERGKLY FTNLQSKDNV PTMINPKPCG HLCCCVVQGC EQVEAIEYYT 351 400 ENSTTRP00000016286/1-832 KLEQKLKEDY KREKEKVNEK PLGMAFVTFH NETITAIILK DFNVCKCQGC bmy_00034T0/1-845 KLEQKLKEDY KREKEKVNEK PLGMAFVTFH NETITAIILK DFNVCKCQGC ENSBTAP00000028054/1-830 KLEQKLKEDY KREKEKVNEK PLGMAFVTFH NETITAIILK DFNVCKCQGC ENSP00000259746/1-832 KLEQKLKEDY KREKEKVNEK PLGMAFVTFH NETITAIILK DFNVCKCQGC BACU015815/1-805 KLEQKLKEDY KREKEKVNEK PLGMAFVTFH NETITAIILK DFNVCKCQGC 401 450 ENSTTRP00000016286/1-832 ACRGEPRSSS CSESLHISNW TVSYAPDPQN IYWEHLSIRG FIWWLRCLVI bmy_00034T0/1-845 TCRGEPRSSS CSESLHISNW NVSYAPDPQN IYWEHLSIRG FIWWLRCLVI ENSBTAP00000028054/1-830 TCRGEPRSSS CSESLHISNW TVSYAPDPQN IYWEHLSIRG FIWWLRCLVI ENSP00000259746/1-832 TCRGEPRPSS CSESLHISNW TVSYAPDPQN IYWEHLSIRG FIWWLRCLVI BACU015815/1-805 TCRGEPRSSS CSESLHISNW TVSYAPDPQN IYWEHLSIRG FIWWLRCLVI 451 500 ENSTTRP00000016286/1-832 NVVLFILLFF LTTPAIIITT MDKFNVTKPV EYLNNPIITQ FFPTLLLWCF bmy_00034T0/1-845 NVVLFILLFF LTTPAIIITT MDKFNVTKPV EYLNNPIITQ FFPTLLLWCF ENSBTAP00000028054/1-830 NVVLFILLFF LTTPAIIITT MDKFNVTKPV EYLNNPIITQ FFPTLLLWCF ENSP00000259746/1-832 NVVLFILLFF LTTPAIIITT MDKFNVTKPV EYLNNPIITQ FFPTLLLWCF BACU015815/1-805 NVVLFILLFF LTTPAIIITT MDKFNVTKPV EYLNNPIITQ FFPTLLLWCF 501 550 ENSTTRP00000016286/1-832 SALLPTIVYY SAFFEAHWTR SGENRTTMHK CYTFLIFMVL LLPSLGLSSL bmy_00034T0/1-845 SALLPTIVYY SAFFEAHWTR SGENRTTMHK CYTFLIFMVL LLPSLGLSSL ENSBTAP00000028054/1-830 SALLPTIVYY SAFFEAHWTR SGENRTTMHK CYTFLLFMVL LLPSLGLSSL ENSP00000259746/1-832 SALLPTIVYY SAFFEAHWTR SGENRTTMHK CYTFLIFMVL LLPSLGLSSL BACU015815/1-805 SALLPTIVYY SAFFEAHWTR SGENRTTMHK CYTFLIFMVL LLPSLGLSSL 551 600 ENSTTRP00000016286/1-832 DLFFRWLFDK KFLAEAAIRF ECVFLPDNGA FFVNYVIASA FIGNAMDLLR bmy_00034T0/1-845 DLFFRWLFDK KFLAEAAIRF ECVFLPDNGA FFVNYVIASA FIGNAMDLLR ENSBTAP00000028054/1-830 DLFFRWLFDK KFLAEAAIRF ECVFLPDNGA FFVNYVIASA FIGNAMDLLR ENSP00000259746/1-832 DLFFRWLFDK KFLAEAAIRF ECVFLPDNGA FFVNYVIASA FIGNAMDLLR BACU015815/1-805 DLFFRWLFDK KFLAEAAIRF ECVFLPDNGA FFVNYVIASA FIGNAMDLLR 601 650 ENSTTRP00000016286/1-832 IPGLLMYMIR LCLARSAAER RNVKRHQAYE FQFGAAYAWM MCVFTVVMTY bmy_00034T0/1-845 IPGLLMYMIR LCLARSAAER RNVKRHQAYE FQFGAAYAWM MCVFTVVMTY ENSBTAP00000028054/1-830 IPGLLMYMIR LCLARSAAER RNVKRHQAYE FQFGAAYAWM MCVFTVVMTY ENSP00000259746/1-832 IPGLLMYMIR LCLARSAAER RNVKRHQAYE FQFGAAYAWM MCVFTVVMTY BACU015815/1-805 IPGLLMYMIR LCLARSAAER RNVKRHQAYE FQFGAAYAWM MCVFTVVMTY 651 700 ENSTTRP00000016286/1-832 SITCPIIVPF GLMYMLLKHL VDRYNLYYAY LPAKLDKKIH SGAVNQVVAA bmy_00034T0/1-845 SITCPIIVPF GLMYMLLKHL VDRYNLYYAY LPAKLDKKIH SGAVNQVVAA ENSBTAP00000028054/1-830 SITCPIIVPF GLMYMLLKHL VDRYNLYYAY LPAKLDKKIH SGAVNQVVAA ENSP00000259746/1-832 SITCPIIVPF GLMYMLLKHL VDRYNLYYAY LPAKLDKKIH SGAVNQVVAA BACU015815/1-805 SITCPIIVPF GLMYMLLKHL VDRYNLYYAY LPAKLDKKIH SGAVNQVVAA 701 750 ENSTTRP00000016286/1-832 PILCLFWLLF FSTMRTGFLA PTSMFTFVVL VITIVICLCH VCFGHFKYLS bmy_00034T0/1-845 PILCLFWLLF FSTMRTGFLA PTSMFTFVVL VITIVICLCH VCFGHFKYLS ENSBTAP00000028054/1-830 PILCLFWLLF FSTMRTGFLA PTSMFTFVVL VITIVVCLCH VCFGHFKYLS ENSP00000259746/1-832 PILCLFWLLF FSTMRTGFLA PTSMFTFVVL VITIVICLCH VCFGHFKYLS BACU015815/1-805 PILCLFWLLF FSTMRTGFLA PTSMFTFVVL VITIVICLCH VCFGHFKYLS 751 800 ENSTTRP00000016286/1-832 AHNYKIEHTE TDTVDPRSNG RPPSAAAVPK SAKYIAQVLQ DPEVDGDGDG bmy_00034T0/1-845 AHNYKIEHTE TDTVDPRSNG RPPSAAAVPK SAKYIAQVLQ DSEVDGDGDG ENSBTAP00000028054/1-830 AHNYKIEHTE TDSVDPRSNG RPPNAAAVPK SAKYIAQVLQ DSEV--DGDG ENSP00000259746/1-832 AHNYKIEHTE TDTVDPRSNG RPPTAAAVPK SAKYIAQVLQ DSEVDGDGDG BACU015815/1-805 AHNYKIEHTE TDTVDPRSNG RPPSAAAVPK SAKYIAQVLQ DSEVDGDGDG 801 850 ENSTTRP00000016286/1-832 GPGSSGDEPP SSSSQDEDLL MPPDGLTDTD FQSCEDSLIE NEIHQ bmy_00034T0/1-845 GPGSSGDEPP SSSSQDEDLL MPPDGLTDTD FQSCEDSLIE NEIHQ ENSBTAP00000028054/1-830 GPGSSGDEPP SSSSQDEELL MQPDGLTDTD FQSCEDSLIE NEIRQ ENSP00000259746/1-832 APGSSGDEPP SSSSQDEELL MPPDALTDTD FQSCEDSLIE NEIHQ BACU015815/1-805 GPGSSGDEPP SSSSQDEDLL MPPDGLTDTD FQSCEDSLIE NEIHQ