KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:00 2014 Check: 00 .. Name: ENSP00000055335/1-799 Len: 815 Check: 3339 Weight: 1.00 Name: ENSBTAP00000028107/1-807 Len: 815 Check: 9836 Weight: 1.00 Name: ENSTTRP00000016091/1-796 Len: 815 Check: 5658 Weight: 1.00 Name: bmy_16653T0/1-811 Len: 815 Check: 7060 Weight: 1.00 Name: BACU009764/1-484 Len: 815 Check: 8290 Weight: 1.00 // 1 50 ENSP00000055335/1-799 MARTAPVEPP LRHSAPPSPA AGEPRTSVEA AVAPRRVLFA DEALGLPLAQ ENSBTAP00000028107/1-807 MARTAPVEPP LRHPAPPSLA SGEPRTSVEA AVAPRRVLFA DEALGLPLAQ ENSTTRP00000016091/1-796 MARTAPVEPP LRHPAPPSPA AGEPRTSFEA AVAPRRVLFA DKALGLPLAQ bmy_16653T0/1-811 MARTAPVEPP LRHPAPPSPA AGEPRTSVEA AVAPRRVLFA DEALGLPLAQ BACU009764/1-484 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000055335/1-799 LRRYRPWGGP GAGKMAAAAG QDGGGGGGAD EDDDGEDGDE GEEEEEACPE ENSBTAP00000028107/1-807 LRRYRPWGGP GAGKMAAAAG QD-GDGGGA- EDDDGEDGDE GEEEEEACPE ENSTTRP00000016091/1-796 LRLYRPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16653T0/1-811 LRRYRPWGGP GAGKMAVAAG QD-GVGGGAD EDDDGEDGDE GEEEEEACPE BACU009764/1-484 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000055335/1-799 PSPLCPVPAG GGFYLVPTFS LPPAPGRLER LGRVMVELEA LLPPPGAVPG ENSBTAP00000028107/1-807 PSPLCPVPAG GGFYLVPTFS LPPAPGRLER LGRVMVELEA LLPPPGAVPG ENSTTRP00000016091/1-796 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16653T0/1-811 PSPLCPVPAG GGFYLVPTFS LPPAPGRLER LGRVMVELEA LLPPPGAVPG BACU009764/1-484 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000055335/1-799 GAGVWVPGGR PPVLRGLVRV LNRSFEKAVH VRASHDGWAS FCDHPARYVP ENSBTAP00000028107/1-807 GAGVWVPGGR PPVLRGLVRV LNRSFEKVVH VRASHDGWAS FCDHPARYVP ENSTTRP00000016091/1-796 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16653T0/1-811 GAGVWVPGGR PPVLRGLVRV LNRSFEKAVH VRASHDGWAS FCDHPARYVP BACU009764/1-484 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000055335/1-799 RSPPWAGAGG TGAGDPILDP GLGLGPGQAS ASSPDDGGRT DRFAFQLPFA ENSBTAP00000028107/1-807 RSPPGAGAGG PGAGDPILDL GLGLGPGQVS ASSPDDGGRT DRFAFQLPFA ENSTTRP00000016091/1-796 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16653T0/1-811 RSPPGAGAGG PGAGDPILDL GLGLGPGQAP TSSPDDGGRT DRFAFQLPFA BACU009764/1-484 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000055335/1-799 EGAGDGARLD FVVRYETPEG TFWANNHGRN YTVLLRIAPA PTPTDAEGLP ENSBTAP00000028107/1-807 EGAGDGARLD FVVRYETPEG TFWANNHGRN YTVLLRIAPA PIPTDAEGLL ENSTTRP00000016091/1-796 XXXXXXXXXX XXXXXXTPEG TFWANNHGRN YTVLLRIAPA PTPTDAEGLP bmy_16653T0/1-811 EGAGDGARLD FVVRYETPEG TFWANNHGRN YTVLLRIAPV PTPTDAEGLP BACU009764/1-484 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000055335/1-799 QQQQLPQLEP QPECQGPVEA EARQLKSCMK PVRRRPAEEE LKTKNMDDNT ENSBTAP00000028107/1-807 QQ---QQLEP QPECQGPVEA EARQLKSCMK PMRRRPN-EE LKMKSADDNT ENSTTRP00000016091/1-796 QQQQLQQLEP QPECQGPVEA EARQLKSCMK PVRRRPNEEE LRMKSADDNT bmy_16653T0/1-811 QQQQLQQLEP QPECQGPVEA EARQLKSCMK PVRRRPNEEE LRMKSADDNT BACU009764/1-484 ---------- ---------- --------MK PVRRRPNEEE LRMKSADDNT 351 400 ENSP00000055335/1-799 FAMAEHPDVQ ESVGPLVAPT PLRPWPQMTL QVSDVPMTGN PAEEGDVPRS ENSBTAP00000028107/1-807 PAVAERPDVQ ETVGPLVAPT PLRPWPQMTL QVSEVTVTGR PPEEGDVTRS ENSTTRP00000016091/1-796 PAVAERPDVQ ESVGPLVAPT PLRPWPQMTL QVSEVTVTGK PPEEGDVPRS bmy_16653T0/1-811 PAVAERPDVQ ESVGPLVAPT PLRPWPQMTL QVSEVTVTGK PPEEGDVPRS BACU009764/1-484 PAVAERPDVQ ESVGPLVAPT PLRPWPQMTL QVSEVTVPGK PPEEGDVPRS 401 450 ENSP00000055335/1-799 SPPVAFTEVL QAPAIRIPPS SPLCGLGGSP RDQASGPDAS EGATGPFLEP ENSBTAP00000028107/1-807 SPPVTFTEVP QAPAIRIPLS SSLCALGRSP RDQASGPDAS EGAAGPLLEP ENSTTRP00000016091/1-796 SPPVAFTEVP QAPAIGIPLS SSLCGLGGSP RDQASGPDAS EGAAGPFLEP bmy_16653T0/1-811 SPPVAFTEVP QAPAIRIPLS SSLCGLGGSP RDQASGPDAS EGAAGPFLEP BACU009764/1-484 SPPVAFTEVP QAPAIRIPLS SSLCGLGGSP RDQASGPDAS EGAAGPFLEP 451 500 ENSP00000055335/1-799 SQQQAEATWG VSSENG---- ---------- --GGLEAVSG SEELLGEDTI ENSBTAP00000028107/1-807 SQRQMEATWE VSSENGRGRK EPVVGAVMDK PPGGLEVVSG LEELLGEDTI ENSTTRP00000016091/1-796 SQRQVEATWE VSRENG---- ---------- --GGLEVVSG LEELLGEDTI bmy_16653T0/1-811 SQRQVEATWE VSRENGRGRK DPIVGAIMDE PPGGLEVVSG LEELLGEDTI BACU009764/1-484 SQRQVEATWE VSRENGRGRK DPIVGAIMDE PPGGLEVVSG LEELLGEDTI 501 550 ENSP00000055335/1-799 DQELEQLYLS HLSRLRAAVA AGGAGGGGEG STDGGMSPSH PLGILTDRDL ENSBTAP00000028107/1-807 DQELEQLYQS HLSRLRAAVA AGGAGGGGEG SIDGGVSPSH PLGILTDRDL ENSTTRP00000016091/1-796 DQELEQLYLS HLSRLRAAVA AGGTGGSGEG PTDGGVSPSH PLGVLTDRDL bmy_16653T0/1-811 DQELEQLYLS HLSRLRAAVA AGGAGGGGEG PTDGGVSPSH PLGILTDRDL BACU009764/1-484 DQELEQLYLS HLSSLLAAVA AGGAGGGGEG PTDGGVSPSH SLGILTDRDL 551 600 ENSP00000055335/1-799 ILKWPGPERA LNSALAEEIT LHYARLGRGV ELIKDTEDPD DEGEGEEGLS ENSBTAP00000028107/1-807 ILKWPGPERA LNSALAEEIT LHYARLGRGV ELIKDTEDPD EEGEGEEGLS ENSTTRP00000016091/1-796 ILKWPGPERA LNSALAEEIT LHYARLGRGV ELIKDTEDPD EEGEGEEGLP bmy_16653T0/1-811 ILKWPGPERA LNSALAEEIT LHYARLGRGV ELIKDTEDPD EEGEGEEGLS BACU009764/1-484 ILKWPGPERA LNSALAEEIT LHYARLGRGV ELIKDTEDPD EEGEGEEGLS 601 650 ENSP00000055335/1-799 VTPSSPEGDS PKESPPEILS GARSVVATMG DVWLPWAEGS GCDGPVVLGT ENSBTAP00000028107/1-807 IIPSSPEGDT PKESPPEILS GAPSLVSTMG DVWLPWAEGS GCNSPVALGI ENSTTRP00000016091/1-796 IIPSSPEGDT PKESPPEILS GAHPVVATMG DVWLPWAEGS GCNSPVVLSM bmy_16653T0/1-811 IIPSSPEGDT PKESPPEILS GAHPVVATMG DVWLPWAEGS GCNSPVVLSM BACU009764/1-484 IIPSSPEGDT PKESPPEILS GAHPVVATMG DVWLPWAEGS GCNSPVFLSM 651 700 ENSP00000055335/1-799 EGQFIGDPEK GMGKDTSSLH MNRVIAGVTE SLGEAGTEAQ IEVTSEWAGS ENSBTAP00000028107/1-807 EGQFSGAPEK GTSKDSDSLH VSRMISGVTG SSG--ATEAQ MEFTTELADR ENSTTRP00000016091/1-796 EGQFTGAPEK GMGKDADSLH VNRVIAGVTG SPG--GTEVQ MEFTTELADR bmy_16653T0/1-811 EGQFTGAPEK GVGKDSDSLH VNRVIAGVTG SPG--GTEVQ MEFTTELADR BACU009764/1-484 EGQFTGAPEK GMGKDSDSLH VNRVIAGVTG SPG--GTEVQ MEFTTELADR 701 750 ENSP00000055335/1-799 LDPISGKEPA SPVLLQGQNP TLLSPLGAEV CLSSVARPHV SSQDEKDAGP ENSBTAP00000028107/1-807 LISISGQEPA ALVLQGRQDL SLLGPLGTEV CPSSLARPHV SPQDEGGSGP ENSTTRP00000016091/1-796 SVSIFGKEPA APVL-QGQDL PLLGSLGAEV CPSSLARPHV SSQDEEGSGP bmy_16653T0/1-811 SVSISGKEPA APVL-QGQDL PLLGPLGAEG CPSSLARPHV SSQDEEGSGP BACU009764/1-484 SVSISGKEPA APVL-QGQDL PLLGPLGAEV CPSSLARPHV SSQDEESSGP 751 800 ENSP00000055335/1-799 SLEPPKKSPT LAVPAECVCA LPPQLRGPLT QTLGVLAGLV VVPVALNSGV ENSBTAP00000028107/1-807 SLEPPKRSPT LADPAESMCV LPPQLWGPLT QTLGVLAVLV VVPVALNNGM ENSTTRP00000016091/1-796 SLEPPKRSPT LAAPAESVCV LPPQLWGPLT QTLGVLAGLV VVPVALNSGM bmy_16653T0/1-811 SLEPPKRSPT LAAPAESVCV LPPQLWGPLT QTLGVLAGLV VVPVALNSGM BACU009764/1-484 SLEPPKRSPT LAAPAESVCV LPPQLWGPLT QTLGVLAGLV VVPVALNSGM 801 850 ENSP00000055335/1-799 SLLVLALCLS LAWFS ENSBTAP00000028107/1-807 SLLVLALCLS LVWFL ENSTTRP00000016091/1-796 SLLVLALCLS LAWFS bmy_16653T0/1-811 SLLVLALCLS LAWFS BACU009764/1-484 SLLVLVLCLS LAWFS