KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:02 2014 Check: 00 .. Name: ENSTTRP00000007284/1-464 Len: 508 Check: 2333 Weight: 1.00 Name: bmy_19851T0/1-476 Len: 508 Check: 6445 Weight: 1.00 Name: ENSP00000411821/1-453 Len: 508 Check: 6783 Weight: 1.00 Name: BACU005246/1-458 Len: 508 Check: 5977 Weight: 1.00 Name: ENSBTAP00000028125/1-453 Len: 508 Check: 7411 Weight: 1.00 // 1 50 ENSTTRP00000007284/1-464 TSPWRRRPRP SRMSPTSTQS PWVWFSSSAP GTTPSASPSS PWWAPLLQVR bmy_19851T0/1-476 MSTVSEVVER ARAA------ ----FNAGKT RPLQCRVQQL EGLRRLIRER ENSP00000411821/1-453 MSKISEAVKR ARAA------ ----FSSGRT RPLQFRIQQL EALQRLIQEQ BACU005246/1-458 MSTVSEVVQR ARAA------ ----FNAGKT RPLQCRVQQL EGLRRLIRER ENSBTAP00000028125/1-453 MSAISEVVQR ARAA------ ----FNSGRT RPLQFRVQQL EGLRRLIRER 51 100 ENSTTRP00000007284/1-464 GPVLGRGAEG SLFS------ ---------- -------TAE GRAWGGGRRP bmy_19851T0/1-476 EKDLVGALAA DLRKVRPDRP QARICARLFT LSPQNTLGAS GPFYGGESAA ENSP00000411821/1-453 EQELVGALAA DLHK------ ---------- -------NEW NAYY--EEVV BACU005246/1-458 EKDL------ ---------- ---------- -------NEW TAYY--EEIV ENSBTAP00000028125/1-453 EKDLVGALAA DLHK------ ---------- -------NEW TAYY--EEIV 101 150 ENSTTRP00000007284/1-464 VRRGSLGSGS HRRVRL-SQE AVGQASWCRP SQAQMSTQPH RPPCALVPGR bmy_19851T0/1-476 AEMGRAGFSL RRRPRRLRGP GF---PVPRP SQAQMSTQPH CPPCTLGPWE ENSP00000411821/1-453 YVLEEIEYMI QKLPEWAADE PVEKTPQTQQ DELYIHSEPL GVVLVIGTWN BACU005246/1-458 YVLEEIDYTI KKLPEWAADE PVEKTPQTQQ DESYIHSEPL GVVLIIGAWN ENSBTAP00000028125/1-453 YVLEEIDYMI RKLPEWAADE PVEKTPHTQQ DEAYIHSEPL GVVLIIGSWN 151 200 ENSTTRP00000007284/1-464 A-EGGWP--- -QHGPDSVCS AGNAVVLKPS ELSENTASLL ATILPQYLDK bmy_19851T0/1-476 GRAGGWP--- -QRGPDSVCS AGNAVVLKPS ELSENTASLL ATILPQYLDK ENSP00000411821/1-453 -----YPFNL TIQPMVGAIA AGNSVVLKPS ELSENMASLL ATIIPQYLDK BACU005246/1-458 -----YPFSL TIQPMVGAIA AGNAVVLKPS ELSENTASLL ATILPQYLDK ENSBTAP00000028125/1-453 -----YPFNL TIQPMVGAIA AGNAVVLKPS ELSENTASLL ATILPQYLDQ 201 250 ENSTTRP00000007284/1-464 DLYPVISGGV PETTEVLKER FDHILYIGSP GVGRIVMMAA AKHLTPVTLG bmy_19851T0/1-476 DLYPVISGGV PETTEVLKER FDHILYTGST GVGKIVMTAA AKHLTPVTLG ENSP00000411821/1-453 DLYPVINGGV PETTELLKER FDHILYTGST GVGKIIMTAA AKHLTPVTLE BACU005246/1-458 DLYPVISGGV PETTEVLKER FDHILYTGST GVGKIVMTAA AKHLTPVTLG ENSBTAP00000028125/1-453 DLYPVINGGV AETTEVLKER FDHILFTGST GVGRVVMMAA AKHLTPVTLE 251 300 ENSTTRP00000007284/1-464 LGGKNPCYVD KDCDLDVACR RIAWGKFMNS GQGCVAPDYI LCDPSIQNQV bmy_19851T0/1-476 LGGKNPCYVD KGCDLDVACR RIAWGKFMNS GQVCVAPDYI LCDPSIQNQI ENSP00000411821/1-453 LGGKSPCYVD KNCDLDVACR RIAWGKFMNS GQTCVAPDYI LCDPSIQNQI BACU005246/1-458 LGGKNPCYVD KGCDLDVACR RIAWGKFMNS GQVCAAPDYI LCDPSIQNQI ENSBTAP00000028125/1-453 LGGKNPCYVD KDCDLDIACR RIAWGKFMNS GQTCVAPDYI LCDPSIQSQV 301 350 ENSTTRP00000007284/1-464 VEKLTKSLKE FYGEDAKKSR DYGRIINSLH FQRVMGLMEG QKVAYGGTGD bmy_19851T0/1-476 VEKLTKSLKE FYGEDAKKSR DYGRIINSLH FQRVMGLMEG QKVAYGGTGD ENSP00000411821/1-453 VEKLKKSLKE FYGEDAKKSR DYGRIISARH FQRVMGLIEG QKVAYGGTGD BACU005246/1-458 VEKLTKSLKE FYGEDAKKSR DYGRIVNSLH FQRVMGLMEG QKVAYGGTGD ENSBTAP00000028125/1-453 VEKLKKSLKE FYGEDAKKSR DYGRIINSRH FQRVMGLLEG QKVTYGGTGD 351 400 ENSTTRP00000007284/1-464 ATSRYIAPTI LVDVDPQSPV MQEEVLGPIM PIVCVRGLEE AIQFISQREK bmy_19851T0/1-476 AATRYIAPTI LVDVDPQSPV MQEEVFGPIM PIVCVHSLEE AIQFISQREK ENSP00000411821/1-453 AATRYIAPTI LTDVDPQSPV MQEEIFGPVL PIVCVRSLEE AIQFINQREK BACU005246/1-458 AATRYIAPTI LVDVDPQSPV MQEEVFGPIM PIVCVHSLEE AIQFISQREK ENSBTAP00000028125/1-453 ATTRYIAPTI LTDVDPESPV MQEEVFGPVL PIMCVRSLEE AIQFITQREK 401 450 ENSTTRP00000007284/1-464 PLALYVFSLN DKVIKKMIAE TSSGGVTAND VIVHTTVPSL PYGGVGGSGM bmy_19851T0/1-476 PLALYVFSLN DKVIKKMIAE TSSGGVTAND VIVHVTVPSL PYGGVGGSGM ENSP00000411821/1-453 PLALYMFSSN DKVIKKMIAE TSSGGVAAND VIVHITLHSL PFGGVGNSGM BACU005246/1-458 PLALYVFSLN DKVIKKMIAE TSSGGVTAND VIVHVTVPSL PYGGVGSSGM ENSBTAP00000028125/1-453 PLALYVFSPN DKVIKKMIAE TSSGGVTAND VVVHISVHSL PYGGVGDSGM 451 500 ENSTTRP00000007284/1-464 GSYHGKKSFE TFSHRRSCLV RPLLNEEALR ARYPPSPAK- -------MPR bmy_19851T0/1-476 GSYHGRKSFE TFSHRRSCLV RPLLNEEALR ARYPPSPAK- -------MPR ENSP00000411821/1-453 GSYHGKKSFE TFSHRRSCLV RPLMNDEGLK VRYPPSPAK- -------MTQ BACU005246/1-458 GSYHGRKSFE TFSHRRSCLV RPLLNEEALR ARYPPSPAKP FYCDVPDLTR ENSBTAP00000028125/1-453 GSYHGRKSFE TFSHRRSCLV RPLLNEETLK ARYPPSPAK- -------MPR 501 550 ENSTTRP00000007284/1-464 H------- bmy_19851T0/1-476 H------- ENSP00000411821/1-453 H------- BACU005246/1-458 SGLILFPN ENSBTAP00000028125/1-453 H-------