KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:04 2014 Check: 00 .. Name: ENSTTRP00000000388/1-1432 Len: 1547 Check: 5527 Weight: 1.00 Name: BACU008968/1-1344 Len: 1547 Check: 5285 Weight: 1.00 Name: bmy_04143T0/1-914 Len: 1547 Check: 7103 Weight: 1.00 Name: ENSP00000367721/1-1436 Len: 1547 Check: 5168 Weight: 1.00 Name: ENSBTAP00000028150/1-1402 Len: 1547 Check: 3324 Weight: 1.00 // 1 50 ENSTTRP00000000388/1-1432 ---------- ---------- ---------- ---------- ---------- BACU008968/1-1344 MAVLAALLRV GAHRHSPLLR RRMQEIRYVE QSYVSKPTLN EVVIVSSART bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028150/1-1402 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000000388/1-1432 ---------- ---------- -LHVPASPPA PPPEVTTSAG SCWCPVGPRG BACU008968/1-1344 PIGSFLGSLS SLPATKLGSI AIQEATEKAG IPKEEVKEAY MGNVLQGGEG bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 ---------- ---------- MLHLSAAPPA PPPEVTATAR PCLCSVGRRG ENSBTAP00000028150/1-1402 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000388/1-1432 ---------- --GGKMATAG AMERSFVELS GAERERPRHF REFTVCCIGT BACU008968/1-1344 QAPTRQAVLG AGLGKMAAAG AMERSFVELS GAERERPRHF REFTVCCIGS bmy_04143T0/1-914 ---------- -----MAAAG AMERSFVELS GAERERPRHF REFTVCGIGT ENSP00000367721/1-1436 D--------- --GGKMAAAG ALERSFVELS GAERERPRHF REFTVCSIGT ENSBTAP00000028150/1-1402 ---------- -----MAAAG AVERSFVEVV GAERERPRHF REFTVCGIGT 151 200 ENSTTRP00000000388/1-1432 ANVVAGAVKY GESAGGFCYV ESGKLFSVTR NRFIHWKTSG DTLELVEESL BACU008968/1-1344 ANAVAGAVKY GESAGGFYYV ESGKLFSVTR NRFIHWKTSG DTLELVEESL bmy_04143T0/1-914 ANAVAGAVKY GESAGGFYYV ESGKLFSVTR NR----KTSG DTLELVEESL ENSP00000367721/1-1436 ANAVAGAVKY SESAGGFYYV ESGKLFSVTR NRFIHWKTSG DTLELMEESL ENSBTAP00000028150/1-1402 AASQAQALEH GHIEGGFWTD ENGKGFAGSR NSVSDRKASG DTLELLEESL 201 250 ENSTTRP00000000388/1-1432 DINLLNNAVR LKFQNCILLP GGVHVSETPN HVIILILTNQ TVHRLLLPHP BACU008968/1-1344 DINLLNNAVR LKFQNCILLP GGVHVSETQN HVIILILTNQ TVHRLLLPHP bmy_04143T0/1-914 DINLLNNAVR LKFQNCILLP GGVHVSETQN HVIILILTNQ TVHRLLLPHP ENSP00000367721/1-1436 DINLLNNAIR LKFQNCSVLP GGVYVSETQN RVIILMLTNQ TVHRLLLPHP ENSBTAP00000028150/1-1402 DINLLNNAVR LKFQNGVLLP GGVHVSETQN HVIILILTNQ TVHRLLLPHP 251 300 ENSTTRP00000000388/1-1432 SRMYRSELVI ESQMQSIFTD IGKVDFRDPC NYQLIPTVPG LSPHSTTSAA BACU008968/1-1344 SRMYRSELVI ESQMQSVFTD IGKVDFRDPC NYQLIPTVPG LSPNSTTSAA bmy_04143T0/1-914 SRMYRSELVI ESQMQSVFTD IGKVDFRDPC NYQLIPXVPG LSPNSTTSAA ENSP00000367721/1-1436 SRMYRSELVV DSQMQSIFTD IGKVDFTDPC NYQLIPAVPG ISPNSTASTA ENSBTAP00000028150/1-1402 SRMYRSELAI ESQMQSIFTD IGKVDFRDPC NYQPIPSVPG LSPGSATSAA 301 350 ENSTTRP00000000388/1-1432 WLSNDGEALF AVPSASGGIF VLKLPPHDVP GMVSVVELKQ SSVMQRLLIG BACU008968/1-1344 WLSNDGEALF ALPSPSGGIF VLKLPPYDVP GMVSVVELKQ SSVMQRLLIG bmy_04143T0/1-914 WLSNDGEALD GISCGAE--- ---------- -----TEFSN ATIAYRLDAD ENSP00000367721/1-1436 WLSSDGEALF ALPCASGGIF VLKLPPYDIP GMVSVVELKQ SSVMQRLLTG ENSBTAP00000028150/1-1402 WLSNDGEALF ALPSASGGIF VLKLPPYDIP GVVSVVELKQ SSVMQRLLIG 351 400 ENSTTRP00000000388/1-1432 WMPTVIRGDQ GPTDRPLSLA VHCVKNDAFI FALCQDHKLR MWSYKEQMCL BACU008968/1-1344 WMPTVIRGDQ GPSDRPLNLA VYCVKHDAFI FALCQDHKLR MWSYKDQMCL bmy_04143T0/1-914 -------SYQ GPSDRPLNLA VYCVKHDAFI FALCQDHKLR MWSYKDQMCL ENSP00000367721/1-1436 WMPTAIRGDQ SPSDRPLSLA VHCVEHDAFI FALCQDHKLR MWSYKEQMCL ENSBTAP00000028150/1-1402 WMPTAIRGDQ GPSDRPLSLA VHCVEHNAFI FALCQDHKLR MWSYKDQMCL 401 450 ENSTTRP00000000388/1-1432 MVADMLEYVP VNKDLRLTAG TGHKLRFAYS STLGVCLGIY MHAPKRGQFC BACU008968/1-1344 MVADMLEYVP VNKDLRLTAG TGHKLRLAYS PSVGLYLGIY MHAPKRG--- bmy_04143T0/1-914 MVADMLEYVP VNKDLRLTAG TGHKLRLAYS PSMGLYLGIY MHAPKRGQFC ENSP00000367721/1-1436 MVADMLEYVP VKKDLRLTAG TGHKLRLAYS PTMGLYLGIY MHAPKRGQFC ENSBTAP00000028150/1-1402 MVADMLEFVP VNKDLRLTAG TGHKLRLAYS PSMGLYLGVY LHAPKRGQFC 451 500 ENSTTRP00000000388/1-1432 IFQLVSVENN RYSIDHISSL FTSQETLIDF ALTSTDIWVL WHDAENQTVV BACU008968/1-1344 ---------- ---------- ---QETLIDF ALTSTDIWAL WHGAENQTVV bmy_04143T0/1-914 IFQLVSTENN RYSLDHISSL FTSQETLIDF ALTSTDIWAL WHDAENQTVV ENSP00000367721/1-1436 IFQLVSTESN RYSLDHISSL FTSQETLIDF ALTSTDIWAL WHDAENQTVV ENSBTAP00000028150/1-1402 VFQLVSAENN RYSLDHISSL FTSQETLIDF ALTSTDIWAL WHDAENQTAV 501 550 ENSTTRP00000000388/1-1432 KYINFEHNVT GQWNPVFMQP LPEEEIIIRD DQDPREIYLQ SLFTPGRFIN BACU008968/1-1344 KYINFEHNVA GQWNPVFMQP LPEEEIIIRD DQDPR----- ---------- bmy_04143T0/1-914 KYINFEHNVA GQWNPVFMQP LPEEXIIIRD DQDPREMYLQ SLFTPGRFIN ENSP00000367721/1-1436 KYINFEHNVA GQWNPVFMQP LPEEEIVIRD DQDPREMYLQ SLFTPGQFTN ENSBTAP00000028150/1-1402 KYINFEHNVA GQWSPVFMQP LPEEEIVIRD DQDPREMYLQ SLFTPGRFIN 551 600 ENSTTRP00000000388/1-1432 AALCKALQIF CRGTDRNLDL SWNELKKEVT LAVESELQGS VTEYEFSQEE BACU008968/1-1344 --------IF CRGTDRNLDL SWNELKKEVT LAVESELQGS VTEYEFSQEE bmy_04143T0/1-914 AALCKALQIF CRGTDRNLDL SWNELKKEVT LAVESELQGS VTEYEFSQEE ENSP00000367721/1-1436 EALCKALQIF CRGTERNLDL SWSELKKEVT LAVENELQGS VTEYEFSQEE ENSBTAP00000028150/1-1402 AALCKALQIF CRGTERNLDL SWMELKKEVT LAVESELQGS VTEYEFSQEE 601 650 ENSTTRP00000000388/1-1432 FRNLQQEFWC KFYACCLQYQ EALSHPLALH VNPHTNMVCL LKKGYLSFLV BACU008968/1-1344 FRNLQQEFWC KFYACCLQYQ EALSHPLALH LNPHTNMVCL LKKVRGQ--- bmy_04143T0/1-914 FRNLQQEFWC KFYACCLQYQ EALSHPLALH LNPHTNMVCL LKKGYLSFLV ENSP00000367721/1-1436 FRNLQQEFWC KFYACCLQYQ EALSHPLALH LNPHTNMVCL LKKGYLSFLI ENSBTAP00000028150/1-1402 FRSLQQEFWC KFYACCLQYQ EALSHPLALH LNPHTSMVCL LKKGYLSFLV 651 700 ENSTTRP00000000388/1-1432 PSSFVDHLYL LPDENLLTED ETIISDDVDV ARDVVCLIKC LRLIGESVTT BACU008968/1-1344 KHNRRNSFRL L--------- ------NADV ARDVVCLIKC LRLIGESVTM bmy_04143T0/1-914 PSSLVDHLYL LPDENLLTED ETTISDDVDV ARDVXCLIKC LRLIGESVTM ENSP00000367721/1-1436 PSSLVDHLYL LPYENLLTED ETTISDDVDI ARDVICLIKC LRLIEESVTV ENSBTAP00000028150/1-1402 PSSLVDHLYL LPDENLLTED ETTISDDVDV ARDVMCLIKC LRLIGESVTM 701 750 ENSTTRP00000000388/1-1432 DMSVMMEMSC YNLQSPEKAA EQILEDLIAI DVDSVMEDIC SKLQEIRNPI BACU008968/1-1344 DMSVMMEMSC YNLQSPEKAA EQILEDLITI DVDNVMEDIC SRLQEIRNPT bmy_04143T0/1-914 DMSVMMEMSC YNLQ------ ---------- --DNVMEDIC SKLQEIRNPT ENSP00000367721/1-1436 DMSVIMEMSC YNLQSPEKAA EQILEDMITI DVENVMEDIC SKLQEIRNPI ENSBTAP00000028150/1-1402 DMSVMMEMSC YNLQSPEKAA EQILEDLITI DVDNVMEDIC SKLQEIRNPI 751 800 ENSTTRP00000000388/1-1432 HAIGLLIREM DYETEVEMEK GFDPAQPLNI RMNLSQVYGS STAGRIVCRS BACU008968/1-1344 HAIGLLIREM DYETEVEMEK GFNPAQPLNI RMNLSQLYGS STAGRIVCRS bmy_04143T0/1-914 HAIGLLIREM DYETEVEMEK GFSPAQPLNI RMNLSQLYGX STAGRIVCRS ENSP00000367721/1-1436 HAIGLLIREM DYETEVEMEK GFNPAQPLNI RMNLTQLYGS NTAGYIVCRG ENSBTAP00000028150/1-1402 HAIGLLIREM DYETEVEMEK GFSPAQPLNV RMNLSQLYGS STSGHIVCRS 801 850 ENSTTRP00000000388/1-1432 VCKIASTRFL ICRDLLILQQ LLMRLGDAVI LGAGQLFQAQ QELLHRTAPL BACU008968/1-1344 VCKIASTRFL ICRDLLILQQ LLMRLGDAVI LGAGQLFQAQ QDLLHRTAPL bmy_04143T0/1-914 VCKIASTRFL ICRDLLILQQ LLMRLGDAVI LGAGQLFQAQ QDLLHRTAPL ENSP00000367721/1-1436 VHKIASTRFL ICRDLLILQQ LLMRLGDAVI WGTGQLFQAQ QDLLHRTAPL ENSBTAP00000028150/1-1402 VCKIASTRFL ICRDLLILQQ LLMRLGDAVI LGAGQLFQAQ QDLLHRTAPL 851 900 ENSTTRP00000000388/1-1432 LLSYYLIKWG SQCLATDVPV DTLESNLQHL SVLELTDSGA LMANKFVSSP BACU008968/1-1344 LLSYYLIKWG SQCLATDVPV DTLESNLQHL SVLELTDSGA LMANKFEN-- bmy_04143T0/1-914 LLSYYLIKWG SQCLATDVPV DTLESNLQHL SVLELTDSGA LMANKFVSSP ENSP00000367721/1-1436 LLSYYLIKWG SECLATDVPL DTLESNLQHL SVLELTDSGA LMANRFVSSP ENSBTAP00000028150/1-1402 LLSYYLIKWG SQCLATDVPV DTLESNLQHL SVLELTDSGA LTANKFVSSP 901 950 ENSTTRP00000000388/1-1432 QTIVELFFQE VARKHIISHL FSQPKAPLSQ TELNWPEMIT AITSYLLQLL BACU008968/1-1344 -----IFYA- ---------- ---------- ---------- ---------- bmy_04143T0/1-914 QTIVELFFQE VARKHIISHL FSQPKAPLSQ TGLNWPEMIT AITNYLLQLL ENSP00000367721/1-1436 QTIVELFFQE VARKHIISHL FSQPKAPLSQ TGLNWPEMIT AITSYLLQLL ENSBTAP00000028150/1-1402 QTIVELFFQE VARKHIISHL FSQPKAPLSQ TGLNWPEMIT AVTNYLLQLL 951 1000 ENSTTRP00000000388/1-1432 WPSNPGCLFL ECLMGNCQYV Q--------- ---------- ---------- BACU008968/1-1344 ---------- ---------- ---------- ---------- ---------- bmy_04143T0/1-914 WPSNPGCLFL ECLMGNCQYV STVEHFRTVI LVKNGISGTF FFVNVSCILI ENSP00000367721/1-1436 WPSNPGCLFL ECLMGNCQYV Q--------- ---------- ---------- ENSBTAP00000028150/1-1402 WPSNPGCLFL ECLMGNCQYV Q--------- ---------- ---------- 1001 1050 ENSTTRP00000000388/1-1432 -LQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXALEC FCQAASEVGK BACU008968/1-1344 -FKDYIQLLH PWCQVNVGSC RFMLGQCYLV TGEGQKALEC FCQAASEVGK bmy_04143T0/1-914 GLIDYIQLLH PWCQVNVGSC RFMLGRCYLV TGEGQKALEC FCQAASEVGK ENSP00000367721/1-1436 -LQDYIQLLH PWCQVNVGSC RFMLGRCYLV TGEGQKALEC FCQAASEVGK ENSBTAP00000028150/1-1402 -LQDYIQLLH PWCQVNVGSC RFMLGRCYLV TGEGQKALEC FCQAASEVGK 1051 1100 ENSTTRP00000000388/1-1432 EEFLDRLIRS EDGEIVSTPR LQYYDKXXXX XXXXXXXXXX XXXXXXXXXX BACU008968/1-1344 EEFLDRLIRS EDGEIVSTPR LQYYDKVLRL LDVVGLPELV IQLATSAITE bmy_04143T0/1-914 EEFLXRLIRS EDGEIVSTPR LQYYDK---- ---------- ---------- ENSP00000367721/1-1436 EEFLDRLIRS EDGEIVSTPR LQYYDKVLRL LDVIGLPELV IQLATSAITE ENSBTAP00000028150/1-1402 EEFLDRLIRS EDGEIVSTPR LQYYDKVLRL LDVVGLPELV IQLATSAITE 1101 1150 ENSTTRP00000000388/1-1432 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008968/1-1344 AGDDWKSQAT LRTCIFKHHL DLGHNSQAYE ALTQIPDSSR QLDCLRQLVV bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 AGDDWKSQAT LRTCIFKHHL DLGHNSQAYE ALTQIPDSSR QLDCLRQLVV ENSBTAP00000028150/1-1402 AGDDWKSQAT LRTCIFKHHL DLGHNSQAYE ALTQIPDSSR QLDCLRQLVV 1151 1200 ENSTTRP00000000388/1-1432 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008968/1-1344 VLCERSQLQD LVEFPYVNLH NEVVGIIESR ARAVDLMTHN YYELLYAFHI bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 VLCERSQLQD LVEFPYVNLH NEVVGIIESR ARAVDLMTHN YYELLYAFHI ENSBTAP00000028150/1-1402 VLCERSQLQD LVEFPYVNLH NEVVGIIESR ARAVDLMTHN YYELLYAFHI 1201 1250 ENSTTRP00000000388/1-1432 XXXXXXXXGT VMFEYGMRLG REVRTLRGLE KQGNCYLAAI NCLRLIRPEY BACU008968/1-1344 YRHNYRKAGT VMFEYGMRLG REVRTLRGLE KQGNCYLAAI NCLRLIRPEY bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 YRHNYRKAGT VMFEYGMRLG REVRTLRGLE KQGNCYLAAL NCLRLIRPEY ENSBTAP00000028150/1-1402 YRHNYRKAGT VMFEYGMRLG REVRTIRGLE KQGNCYLAAI NCLRLIRPEY 1251 1300 ENSTTRP00000000388/1-1432 AWIVQPASGA VYDRPGASPK RNHDGECTAA PTNRQIEILE LEDLEKECSL BACU008968/1-1344 AWIVQPVSGA VYDRPGASPK RNHDGECTAA PR-------- ---------- bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 AWIVQPVSGA VYDRPGASPK RNHDGECTAA PTNRQIEILE LEDLEKECSL ENSBTAP00000028150/1-1402 AWIVQPASGA VYDRPGASPK RNHDGECTAA PTNRQIEILE LEDLEKECSL 1301 1350 ENSTTRP00000000388/1-1432 ARIRLTLAQH DPSAVAVAGS SSAEEMVTLL VQAGLFDTAI ALCQTFKLPL BACU008968/1-1344 ---------- ---------S SSAEEMVTLL VQAGLFDTAI SLCQTFKLSL bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 ARIRLTLAQH DPSAVAVAGS SSAEEMVTLL VQAGLFDTAI SLCQTFKLPL ENSBTAP00000028150/1-1402 ARIRLTLAQH DPSAAAVAGS SSAEEMVTLL VQAGLFDTAI SLCQTFKLPL 1351 1400 ENSTTRP00000000388/1-1432 MPVFEGLAFK CIKLQFGGEA AQAEAWAWLA ANQLSSVITT KESSATDEAW BACU008968/1-1344 MPVFEGLAFK CIRLQFGGET AQAEAWAWLA ANQLSSVITT KESSATDEAW bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 TPVFEGLAFK CIKLQFGGEA AQAEAWAWLA ANQLSSVITT KESSATDEAW ENSBTAP00000028150/1-1402 TPVFEGLAFK CIKLQFGGEA VQAEAWAWLA ANQLSSVITT KESSATDEAW 1401 1450 ENSTTRP00000000388/1-1432 RLLSTYLEKY KVQNNLYHHC VINKLLSHGV PLPNWLINSY KXXXAAELLR BACU008968/1-1344 RLLSTYLEKY KVQNNLYHHC VINKLLSHGV PLPNWLINSY KKVDAAALLR bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 RLLSTYLERY KVQNNLYHHC VINKLLSHGV PLPNWLINSY KKVDAAELLR ENSBTAP00000028150/1-1402 RLLSAYLERY KVQNNLYHHC VINKLLSHGV PLPNWLINSY KKVDAAELLR 1451 1500 ENSTTRP00000000388/1-1432 LYLNYDLLEE AVDL-SEYVD AV-GKGHQYF GIEFPLSATA PMVWLPYSSI BACU008968/1-1344 LYLNYDLLEE AVDLVSEYVD AVLGKGHQYF GIEFPLSATA PMVWLPYSSI bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ---------- ENSP00000367721/1-1436 LYLNYDLLEE AVDLVSEYVD AVLGKGHQYF GIEFPLSATA PMVWLPYSSI ENSBTAP00000028150/1-1402 LYLNYDLLEE AVELVSEYVD AVLGKGHQYF GIEFPLSATA PMVWLPYSSI 1501 1550 ENSTTRP00000000388/1-1432 DQLLQALGEN SANSHNIALS QKILDKLEDY QQKVDKATRD LLYRRNL BACU008968/1-1344 DQLLQALGEN SANSHNIALS QKILDKLEDY QQKVDKATRD LLYRRNL bmy_04143T0/1-914 ---------- ---------- ---------- ---------- ------- ENSP00000367721/1-1436 DQLLQALGEN SANSHNIALS QKILDKLEDY QQKVDKATRD LLYRRTL ENSBTAP00000028150/1-1402 DQLLQALGEN TANSHNIALS QKILDKLEDY QQKVDKATRD LLYRRNL