KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:35:05 2014 Check: 00 .. Name: ENSTTRP00000008987/1-766 Len: 920 Check: 2019 Weight: 1.00 Name: ENSP00000264758/1-768 Len: 920 Check: 7228 Weight: 1.00 Name: ENSBTAP00000028152/1-738 Len: 920 Check: 2990 Weight: 1.00 Name: bmy_05454T0/1-846 Len: 920 Check: 9074 Weight: 1.00 Name: BACU004134/1-756 Len: 920 Check: 5149 Weight: 1.00 // 1 50 ENSTTRP00000008987/1-766 ---------- ---------- ---------- ---------- ---MNGDTRA ENSP00000264758/1-768 ---------- ---------- ---------- ---------- ---MNGDSRA ENSBTAP00000028152/1-738 ---------- ---------- ---------- ---------- ---MNGDTQA bmy_05454T0/1-846 ---------- ---------- ---------- ---------- ---MNGDTRA BACU004134/1-756 MAALLLAALQ FITLLLSTSC APDSSVRCLD DEGQKPGTWK DCAMNGDTQA 51 100 ENSTTRP00000008987/1-766 AVVTSPPPTT APHKERYFDR VDENNPEYLR ERNMAPDLRQ DFNMMEQKKR ENSP00000264758/1-768 AVVTSPPPTT APHKERYFDR VDENNPEYLR ERNMAPDLRQ DFNMMEQKKR ENSBTAP00000028152/1-738 AVVTSPPPTT APHKERYFDR VDENNPEYLR ERNMAPDLRQ DFNMMEQKKR bmy_05454T0/1-846 AVVTSPPPTT APHKERYFDR VDENNPEYLR ERNMAPDLRQ DFNMMEQKKR BACU004134/1-756 AVVTSPPPTT APHKERYFDR VDENNPEYLR ERNMAPDLRQ DFNMMEQKKR 101 150 ENSTTRP00000008987/1-766 VSMILQSPAF CEELESMIQE QFKKGKNPTG LLALQQIADF MTTNVPNVYP ENSP00000264758/1-768 VSMILQSPAF CEELESMIQE QFKKGKNPTG LLALQQIADF MTTNVPNVYP ENSBTAP00000028152/1-738 VSMILQSPAF CEELESMIQE QFKKGKNPTG LLALQQIADF MTTNVPNVYP bmy_05454T0/1-846 VSMILQSPAF CEELESMIQE QFKKGKNPTG LLALQQIADF MTTNVPNVYP BACU004134/1-756 VSMILQSPAF CEELESMIQE QFKKGKNPTG LLALQQIADF MTTNVPNVYP 151 200 ENSTTRP00000008987/1-766 AAPQGGMAAL NMSLGMVTPV NDLRGSDSIA YDKGEKLLRC KLAAFYRLAD ENSP00000264758/1-768 AAPQGGMAAL NMSLGMVTPV NDLRGSDSIA YDKGEKLLRC KLAAFYRLAD ENSBTAP00000028152/1-738 AAPQGGMAAL NMSLGMVTPV NDLRGSDSIA YDKGEKLLRC KLAAFYRLAD bmy_05454T0/1-846 AAPQGGMAAL NMSLGMVTPV NDLRGSDSIA YDKGEKLLRC KLAAFYRLAD BACU004134/1-756 AAPQGGMAAL NMSLGMVTPV NDLRGSDSIA YDKGEKLLRC KLAAFYRLAD 201 250 ENSTTRP00000008987/1-766 LFGWSQLIYN HITXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264758/1-768 LFGWSQLIYN HITTRVNSEQ EHFLIVPFGL LYSEVTASSL VKINLQGDIV ENSBTAP00000028152/1-738 LFGWSQLIYN HITTRVSSEQ EHFLIVPFGL LYSEVTASSL VKVNLQGDIV bmy_05454T0/1-846 LFGWSQLIYN HITTRVSSEQ EHFLIVPFGL LYSEVTASSL VKVNLQGEAV BACU004134/1-756 LFGWSQLIYN HITTRVSSEQ EHFLIVPFGL LYSEVTASSL VKVNLQGEAV 251 300 ENSTTRP00000008987/1-766 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VSAMKXXXXX ENSP00000264758/1-768 DRGSTNLGVN QAGFTLHSAI YAARPDVKCV VHIHTPAGAA VSAMKCGLLP ENSBTAP00000028152/1-738 DRGSTNLGVN QAGFTLHSAI YAARPDVRCV VHIHTPAGAA VSAMKCGLLP bmy_05454T0/1-846 DRGSTNLGVN QAGFTLHSAI YAARPDAKCV VH-------- VSAMKCGLLP BACU004134/1-756 DRGSTNLGVN QAGFTLHSAI YAARPDAKCV VHVHTPAGAA VSAMKCGLLP 301 350 ENSTTRP00000008987/1-766 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264758/1-768 ISPEALSLGE VAYHDYHGIL VDEEEKVLIQ KNLGPKSKVL ILRNHGLVSV ENSBTAP00000028152/1-738 ISPEALSLGE VAYHDYHGIL VDEEEKILIQ KNLGPKSKVL ILRNHGLVSV bmy_05454T0/1-846 ISPEALSLGE VAYHDYHGIL VDEEEKVLIQ KSLGPKSKVL ILRNHGLVSI BACU004134/1-756 ISPEALSLGE VAYHDYHGIL VDEEEKVLIQ KNLGPKSKVL ILRNHGLVSV 351 400 ENSTTRP00000008987/1-766 XXXXXXXXXX XXXXXXXXXX XVRTLASAGG PDNLVLLDPG KYKAKSRSPG ENSP00000264758/1-768 GESVEEAFYY IHNLVVACEI QVRTLASAGG PDNLVLLNPE KYKAKSRSPG ENSBTAP00000028152/1-738 GESVEEAFYY IHNLVVACEI QVRTLASAGG PDNLVLLDPG KYKAKSRAPG bmy_05454T0/1-846 GESVEEAFYY IHNLVVACEI QVRTLASAGG PDNLVLLDPG KYKAKSRSPG BACU004134/1-756 GESVEEAFYY IHNLVVACEI QVRTLASAGG PDNLVLLDPG KYKAKSRSPG 401 450 ENSTTRP00000008987/1-766 SPAGEGSGSP PKWQIGEQEF EALMRMLDNL GYRTGYPYRY PALREKSKKY ENSP00000264758/1-768 SPVGEGTGSP PKWQIGEQEF EALMRMLDNL GYRTGYPYRY PALREKSKKY ENSBTAP00000028152/1-738 SPAGEGSGSP PKWQIGEQEF EALMRMLDNL GYRTGYPYRY PALREKSKKH bmy_05454T0/1-846 SPAGEGSGSP PKWQLGEQEF EALMRMLDNL ---------- -----KSKKY BACU004134/1-756 SPAGEGSGSP PKWQLGEQEF EALMRMLDNL GYRTGYPYRY PALREKSKKY 451 500 ENSTTRP00000008987/1-766 SDVEVPASVT GYPFASDGDS GTCSPLRHSF QKQQREKTRW LNSGRGDDAS ENSP00000264758/1-768 SDVEVPASVT GYSFASDGDS GTCSPLRHSF QKQQREKTRW LNSGRGDEAS ENSBTAP00000028152/1-738 SDVEAPASVT GYSLASDGDS GTCSPLRHSF QKQQREKTRW LNSGRGDDAS bmy_05454T0/1-846 SDVEVPASVT GYPFASDGDS GTCSPLRHSF QKQQREKTRW LNSGRGDDAS BACU004134/1-756 SDVEVPASVT GYPFASDGDS GTCSPLRHSF QKQQREKTRW LNSGRGDAAS 501 550 ENSTTRP00000008987/1-766 EEGQNGSSPK SKTKVWTNIT HDHVKPLLQS LSSGVCVPSC ITNCL----- ENSP00000264758/1-768 EEGQNGSSPK SKTKVWTNIT HDHVKPLLQS LSSGVCVPSC ITNCL----- ENSBTAP00000028152/1-738 EEGQNGSSPK AKTK------ ---------- ---------- ---------- bmy_05454T0/1-846 EEGQNGSSPK SKTKVWTNIT HDHVKPLLQS LSSGVCVPSC ITNCLLDDVE BACU004134/1-756 EEGQNGSSPK SKTK------ ---------- ---------- ---------- 551 600 ENSTTRP00000008987/1-766 ---------- ---------- ---------- ---------- ---------- ENSP00000264758/1-768 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028152/1-738 ---------- ---------- ---------- ---------- ---------- bmy_05454T0/1-846 HVWQLGLRRL WEPGPSDPGL GEPSSPPSLF AVPKPPNALS QLLFAWTVAF BACU004134/1-756 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000008987/1-766 ---------- ---------- ---------- ---------- --XXXXXXXX ENSP00000264758/1-768 ---------- ---------- ---------- ---------- --WTKEDGHR ENSBTAP00000028152/1-738 ---------- ---------- ---------- ---------- --WTKEDGHR bmy_05454T0/1-846 CNLFHLLKGV GLKTTSADHI HINTNSMRCF QKLQLFLSEE ISWTKEDGHR BACU004134/1-756 ---------- ---------- ---------- ---------- --WTKEDGHR 651 700 ENSTTRP00000008987/1-766 XXXXXXXXXX XXXXXXXXXX XXXXXXIREQ NLQDIKTAGP QSQVLCGVVM ENSP00000264758/1-768 TSTSAVPNLF VPLNTNPKEV QEMRNKIREQ NLQDIKTAGP QSQVLCGVVM ENSBTAP00000028152/1-738 TSTSAVPNLF VPLNTNPKEV QEMRNKIREQ NLQDIKTAGP QSQVLSGVVM bmy_05454T0/1-846 TPTSAVPNLF VPLNTNPKEV QEMRNKIREQ NLQDIKTAGP QSQVLCGVVM BACU004134/1-756 TPTSAVPNLF VPLNTNPKEV QEMRNKIREQ NLQDIKTAGP QSQVLCGVVM 701 750 ENSTTRP00000008987/1-766 DRSLVQGELV TASKAIIEKE YQPHVIVSTT GPNPFSTLTD RELDDYRRAV ENSP00000264758/1-768 DRSLVQGELV TASKAIIEKE YQPHVIVSTT GPNPFTTLTD RELEEYRREV ENSBTAP00000028152/1-738 DRSLVQGELV TASKAIIEKE YQPHVIVSTT GPNPFTTLTD RELEEYRREV bmy_05454T0/1-846 DRSLVQGELV TASKAIIEKE YQPHVIVSTA GPNPFNTLTD RELEDYRREV BACU004134/1-756 DRSLVQGELV TASKAIIEKE YQPHVIVSTA GPNPFNTLTD RELEDYRREV 751 800 ENSTTRP00000008987/1-766 ERKHRGPEEN LDETREDKEE SPPEPPAAPH APPSAPIKLE EDLPQEPASG ENSP00000264758/1-768 ERKQKGSEEN LDEAREQKEK SPPDQPAVPH PPPSTPIKLE EDLVPEPTTG ENSBTAP00000028152/1-738 ARKQKGPEEN LDQAREEKEK SPPEP----H TPPSTPVKLE EDLPREPPSA bmy_05454T0/1-846 ERKQKGPEEN LDETREDKEE SPPEPPAPHT PPPSAPIKLE EDLPQEPASG BACU004134/1-756 ERKQKGPEEN LDEAREDKEE SPQQPPAAPH TPPSAPIKLE E--------- 801 850 ENSTTRP00000008987/1-766 DNSDAATFTQ TLPDLSPEEP SEALCFPTL- -EEEE----- -EAGGPA--- ENSP00000264758/1-768 DDSDAATFKP TLPDLSPDEP SEALGFPML- -EKEE----- -EAHRPP--- ENSBTAP00000028152/1-738 DDSDAATFKP TLPDLSPDEP SEALGFPTLE KEEEEEEEGL GEAGGPPSPS bmy_05454T0/1-846 DDSDAATFTP TLPDLSPDEP SEALCFPTL- -EEEEEEEGL CEAGGPP--- BACU004134/1-756 ---------- ---------- -EALCFPTLE EEEEEEEEGL CEAGGPP--- 851 900 ENSTTRP00000008987/1-766 -GPTRSPSAA IPEPV--TAQ AADEAAAPAA EEGAAVDPGS DGSPGKSPSK ENSP00000264758/1-768 -SPTEAPTEA SPEPAPDPAP VAEEAAPSAV EEGAAADPGS DGSPGKSPSK ENSBTAP00000028152/1-738 GSPSRSPPVA SPEPA--PAQ VAEEAASPAA E-----DAGS DGSPGKSPSK bmy_05454T0/1-846 -GPTRSPSAA IPEPV--TAQ VADEAASPAA EEGAAVDPGS DGSPGKSPSK BACU004134/1-756 -GPTRSPSAA IPEPV--TAQ AADEAAAPAA EEGAAVDPGS DGSPGKSPSK 901 950 ENSTTRP00000008987/1-766 KKKKFRTPSF LKKSKKRSDS ENSP00000264758/1-768 KKKKFRTPSF LKKSKKKSDS ENSBTAP00000028152/1-738 KKKKFRTPSF LKKSKKRSDS bmy_05454T0/1-846 KKKKFRTPSF LKKSKKRSDS BACU004134/1-756 KKKKFRTPSF LKKSKKRSDS